Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.52999 * 109.47047 * 60.00062 * 3 2 1 5 5 C 1.52999 * 109.47269 * 300.00032 * 3 2 1 6 6 C 1.53004 * 109.47304 * 180.02562 * 3 2 1 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 3 2 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 3 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46885 * 300.00111 * 1 2 3 26 26 H 1.08996 * 109.46812 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.46885 * 239.99889 * 2 1 3 28 28 H 1.09000 * 109.46800 * 120.00630 * 2 1 3 29 29 H 1.08999 * 109.47136 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47281 * 299.99873 * 4 3 2 31 31 H 1.09000 * 109.47109 * 60.00235 * 4 3 2 32 32 H 1.09003 * 109.47051 * 300.00191 * 5 3 2 33 33 H 1.09002 * 109.47048 * 60.00133 * 5 3 2 34 34 H 1.08999 * 109.47200 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.46885 * 59.99889 * 6 3 2 36 36 H 1.09000 * 109.46800 * 300.00630 * 6 3 2 37 37 H 0.97004 * 120.00039 * 359.97438 * 7 6 3 38 38 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 39 39 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5701 1.4424 -0.0006 7 7 4.0585 2.8236 0.0000 8 6 5.3836 3.0698 -0.0010 9 8 6.1734 2.1459 -0.0018 10 6 5.8766 4.4641 -0.0009 11 6 4.9678 5.5280 -0.0004 12 6 5.4214 6.8348 -0.0009 13 6 6.7723 7.1040 -0.0013 14 6 7.7015 6.0469 -0.0018 15 6 9.0892 6.3200 -0.0017 16 1 9.4546 7.2599 0.3847 17 6 9.9888 5.3723 -0.5025 18 7 9.5601 4.4080 -1.2757 19 14 11.8020 5.4842 -0.0671 20 1 12.0834 4.6191 1.1067 21 1 12.6174 5.0314 -1.2226 22 1 12.1464 6.8910 0.2608 23 6 7.2430 4.7186 -0.0013 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1637 1.2493 31 1 1.8935 1.6498 2.1392 32 1 1.8934 1.6498 -2.1392 33 1 0.4401 2.1638 -1.2492 34 1 1.8931 3.1915 -1.2490 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8891 37 1 3.4281 3.5609 0.0003 38 1 3.9065 5.3279 0.0003 39 1 4.7118 7.6491 -0.0001 40 1 7.1187 8.1270 -0.0021 41 1 10.1838 3.7513 -1.6232 42 1 7.9480 3.9005 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190893810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -44.883678 kcal Electronic energy + Delta-G solvation = -21055.381149 eV Core-core repulsion = 17998.961078 eV Total energy + Delta-G solvation = -3056.420071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.53503 -38.02227 -36.81956 -33.85411 -33.46013 -30.57092 -29.72155 -29.40471 -27.40513 -26.75107 -25.25658 -23.70117 -21.85815 -20.90801 -19.57160 -18.71582 -17.71183 -16.28180 -15.55649 -15.18768 -15.07715 -14.81627 -14.52870 -14.46469 -13.87781 -13.43452 -13.40975 -13.14909 -12.65739 -12.48923 -12.29611 -12.10354 -12.08083 -11.85325 -11.61127 -11.26740 -11.15985 -11.07284 -10.73355 -10.71856 -10.64984 -10.56444 -10.47229 -9.99745 -9.67625 -9.21072 -8.97582 -8.57621 -7.61152 -7.51003 -6.79077 -4.40416 2.23940 2.82514 3.08524 3.12120 3.16527 3.76224 3.90382 3.93502 4.59236 4.64277 4.68617 4.69280 5.11912 5.20981 5.31029 5.46128 5.56489 5.61886 5.62934 5.72747 5.76503 5.81050 5.86160 5.92798 5.97884 6.02378 6.05489 6.12132 6.28332 6.29867 6.32118 6.73391 6.92974 7.00476 7.04144 7.22617 7.39646 7.71730 7.78179 7.94342 8.13166 8.21637 8.52184 8.81427 8.84915 9.00763 10.15578 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.003870 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.387356 B = 7232.983381 C = 7892.234588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.131 3.869 7 N -0.734 5.734 8 C 0.562 3.438 9 O -0.548 6.548 10 C -0.127 4.127 11 C -0.219 4.219 12 C -0.097 4.097 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.092 4.092 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.284 0.716 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 -5.177 1.670 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.077 4.077 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.007 3.993 7 N -0.389 5.389 8 C 0.352 3.648 9 O -0.426 6.426 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.447 -6.061 1.514 14.827 hybrid contribution 0.461 0.360 0.040 0.586 sum -12.986 -5.701 1.554 14.268 Atomic orbital electron populations 1.21875 0.95748 1.01406 1.02108 1.21495 0.95992 0.95111 1.02319 1.20812 0.94337 0.96213 0.96354 1.21939 1.00920 1.00487 0.96836 1.21942 1.00910 1.00505 0.96857 1.21271 0.92012 0.84110 1.01876 1.45996 1.07523 1.07904 1.77465 1.18845 0.81260 0.89956 0.74698 1.90689 1.55496 1.46417 1.50016 1.19492 0.95186 0.90256 1.08137 1.20323 0.96016 0.92664 1.14872 1.20423 0.95249 0.94980 1.00921 1.21090 0.92587 0.97755 1.11846 1.17604 0.93316 0.90734 0.88728 1.19603 0.90789 1.02554 1.35946 0.90061 1.25972 1.01867 0.94128 0.92659 1.69797 1.37837 1.11562 1.21473 0.86258 0.81376 0.79782 0.79093 1.19208 1.20200 1.18538 1.21634 0.92449 0.97905 0.99270 0.92980 0.92405 0.92398 0.91721 0.91741 0.92435 0.92196 0.92443 0.92405 0.92205 0.92427 0.91945 0.91987 0.76548 0.89404 0.88946 0.88642 0.90456 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.21 37.16 0.34 -0.83 16 2 C -0.11 -1.00 4.99 -26.73 -0.13 -1.14 16 3 C -0.08 -0.80 0.56 -154.51 -0.09 -0.89 16 4 C -0.14 -1.42 7.95 37.16 0.30 -1.13 16 5 C -0.14 -1.45 7.95 37.16 0.30 -1.16 16 6 C 0.13 1.88 4.56 -4.04 -0.02 1.86 16 7 N -0.73 -12.37 4.91 -61.24 -0.30 -12.67 16 8 C 0.56 12.55 7.77 -12.31 -0.10 12.46 16 9 O -0.55 -14.07 16.33 5.33 0.09 -13.98 16 10 C -0.13 -3.06 5.87 -105.04 -0.62 -3.67 16 11 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 13 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 14 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 15 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.92 10.96 55.55 0.61 -20.31 16 19 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.09 -2.50 8.23 -38.44 -0.32 -2.81 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 26 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.60 6.86 -51.93 -0.36 0.25 16 30 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.62 6.86 -51.93 -0.36 0.26 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 5.90 4.18 -40.82 -0.17 5.73 16 38 H 0.09 1.54 6.38 -52.48 -0.33 1.21 16 39 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 40 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 42 H 0.13 3.90 5.75 -52.49 -0.30 3.59 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -29.56 334.36 -8.31 -37.88 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.21 Total: 9.14 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.51 Total: -18.99 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.31 Total: -32.98 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.56 -8.31 -37.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190893810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds