Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.52999 * 109.47047 * 60.00062 * 3 2 1 5 5 C 1.52999 * 109.47269 * 300.00032 * 3 2 1 6 6 C 1.53004 * 109.47304 * 180.02562 * 3 2 1 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 3 2 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 3 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46885 * 300.00111 * 1 2 3 26 26 H 1.08996 * 109.46812 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.46885 * 239.99889 * 2 1 3 28 28 H 1.09000 * 109.46800 * 120.00630 * 2 1 3 29 29 H 1.08999 * 109.47136 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47281 * 299.99873 * 4 3 2 31 31 H 1.09000 * 109.47109 * 60.00235 * 4 3 2 32 32 H 1.09003 * 109.47051 * 300.00191 * 5 3 2 33 33 H 1.09002 * 109.47048 * 60.00133 * 5 3 2 34 34 H 1.08999 * 109.47200 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.46885 * 59.99889 * 6 3 2 36 36 H 1.09000 * 109.46800 * 300.00630 * 6 3 2 37 37 H 0.97004 * 120.00039 * 359.97438 * 7 6 3 38 38 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 39 39 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5701 1.4424 -0.0006 7 7 4.0585 2.8236 0.0000 8 6 5.3836 3.0698 -0.0010 9 8 6.1734 2.1459 -0.0018 10 6 5.8766 4.4641 -0.0009 11 6 4.9678 5.5280 -0.0004 12 6 5.4214 6.8348 -0.0009 13 6 6.7723 7.1040 -0.0013 14 6 7.7015 6.0469 -0.0018 15 6 9.0892 6.3200 -0.0017 16 1 9.4546 7.2599 0.3847 17 6 9.9888 5.3723 -0.5025 18 7 9.5601 4.4080 -1.2757 19 14 11.8020 5.4842 -0.0671 20 1 12.0834 4.6191 1.1067 21 1 12.6174 5.0314 -1.2226 22 1 12.1464 6.8910 0.2608 23 6 7.2430 4.7186 -0.0013 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1637 1.2493 31 1 1.8935 1.6498 2.1392 32 1 1.8934 1.6498 -2.1392 33 1 0.4401 2.1638 -1.2492 34 1 1.8931 3.1915 -1.2490 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8891 37 1 3.4281 3.5609 0.0003 38 1 3.9065 5.3279 0.0003 39 1 4.7118 7.6491 -0.0001 40 1 7.1187 8.1270 -0.0021 41 1 10.1838 3.7513 -1.6232 42 1 7.9480 3.9005 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190893810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -61.351430 kcal Electronic energy + Delta-G solvation = -21056.095244 eV Core-core repulsion = 17998.961078 eV Total energy + Delta-G solvation = -3057.134166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08370 -39.32919 -38.52103 -35.66667 -34.96299 -32.16679 -31.29510 -30.76336 -28.18882 -27.96751 -27.08235 -24.87829 -23.31995 -22.74961 -21.25176 -19.86000 -19.27848 -17.98556 -17.19011 -16.73350 -16.43702 -16.39094 -15.70541 -15.54937 -15.34667 -14.98248 -14.61226 -14.56287 -14.28903 -14.22922 -13.49686 -13.12363 -13.00772 -12.94016 -12.83135 -12.80512 -12.67275 -12.52560 -12.18814 -12.01969 -11.89547 -11.62481 -11.49753 -11.39971 -11.37344 -11.09194 -10.77472 -10.13373 -9.47526 -9.39148 -8.67258 -6.38870 0.37616 1.00166 1.35876 1.47457 1.50883 2.10002 2.18766 2.27971 2.78216 3.66215 3.69390 3.83404 3.87313 4.04426 4.37851 4.39004 4.41552 4.58126 4.62745 4.69809 4.71083 4.77380 4.85874 4.91327 5.04641 5.06739 5.08242 5.15431 5.18663 5.18787 5.23608 5.29317 5.31307 5.48412 5.52070 5.52424 5.59731 5.86040 5.92115 6.04888 6.28061 6.50932 6.68509 6.87229 6.94228 7.31218 8.29528 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.003870 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.387356 B = 7232.983381 C = 7892.234588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.067 4.067 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.128 3.872 7 N -0.708 5.708 8 C 0.557 3.443 9 O -0.592 6.592 10 C -0.139 4.139 11 C -0.198 4.198 12 C -0.094 4.094 13 C -0.217 4.217 14 C 0.067 3.933 15 C -0.497 4.497 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.825 5.825 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.250 1.250 23 C -0.132 4.132 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.895 -4.233 2.024 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.067 4.067 4 C -0.202 4.202 5 C -0.203 4.203 6 C 0.004 3.996 7 N -0.361 5.361 8 C 0.347 3.653 9 O -0.474 6.474 10 C -0.142 4.142 11 C -0.218 4.218 12 C -0.112 4.112 13 C -0.237 4.237 14 C 0.065 3.935 15 C -0.526 4.526 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.173 1.173 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.307 -5.095 1.869 17.186 hybrid contribution 1.095 0.069 -0.062 1.099 sum -15.211 -5.025 1.808 16.121 Atomic orbital electron populations 1.21852 0.94070 1.02180 1.02648 1.21500 0.97357 0.93862 1.02190 1.20768 0.90983 0.97650 0.97323 1.21958 1.02345 0.99857 0.96030 1.21965 1.02362 0.99838 0.96100 1.21490 0.95033 0.82163 1.00900 1.45794 1.05667 1.09700 1.74985 1.18787 0.82744 0.88999 0.74793 1.90663 1.57083 1.47351 1.52333 1.19797 0.94739 0.92141 1.07568 1.20821 0.97791 0.91810 1.11379 1.20920 0.94974 0.96436 0.98878 1.21411 0.93641 0.97733 1.10935 1.17951 0.94357 0.91412 0.89773 1.19881 0.91614 1.03471 1.37651 0.89727 1.26878 1.06499 0.93370 0.91901 1.69899 1.39425 1.12701 1.23027 0.85165 0.75491 0.80165 0.78744 1.19235 1.19331 1.17279 1.21436 0.93510 0.97328 1.02948 0.92232 0.91757 0.91861 0.92033 0.91887 0.92892 0.89989 0.92834 0.93012 0.89961 0.92950 0.93142 0.92867 0.74989 0.84831 0.84241 0.87268 0.90327 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.21 71.98 0.66 -1.14 16 2 C -0.11 -1.78 4.99 30.59 0.15 -1.62 16 3 C -0.07 -1.25 0.56 -52.18 -0.03 -1.28 16 4 C -0.14 -2.42 7.95 71.98 0.57 -1.84 16 5 C -0.15 -2.50 7.95 71.98 0.57 -1.93 16 6 C 0.13 3.57 4.56 86.38 0.39 3.97 16 7 N -0.71 -23.10 4.91 -465.93 -2.29 -25.39 16 8 C 0.56 25.27 7.77 86.80 0.67 25.95 16 9 O -0.59 -31.91 16.33 -3.85 -0.06 -31.97 16 10 C -0.14 -6.73 5.87 -20.13 -0.12 -6.84 16 11 C -0.20 -7.87 9.55 22.70 0.22 -7.65 16 12 C -0.09 -3.74 10.01 22.17 0.22 -3.52 16 13 C -0.22 -10.22 9.78 22.77 0.22 -10.00 16 14 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 15 C -0.50 -27.36 9.05 23.47 0.21 -27.15 16 16 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 17 C 0.03 1.51 5.14 85.25 0.44 1.94 16 18 N -0.82 -46.76 10.96 21.82 0.24 -46.52 16 19 Si 0.98 40.15 29.60 68.60 2.03 42.18 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 C -0.13 -7.45 8.23 23.01 0.19 -7.26 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.70 6.43 -2.39 -0.02 0.68 16 26 H 0.06 0.70 6.43 -2.39 -0.02 0.69 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.93 6.86 -2.39 -0.02 0.91 16 30 H 0.08 1.04 6.43 -2.39 -0.02 1.02 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.07 6.43 -2.39 -0.02 1.06 16 34 H 0.05 0.95 6.86 -2.39 -0.02 0.94 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 11.04 4.18 -92.71 -0.39 10.65 16 38 H 0.13 4.02 6.38 -2.91 -0.02 4.01 16 39 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 42 H 0.10 6.15 5.75 -2.91 -0.02 6.14 16 Total: -1.00 -68.83 334.36 4.81 -64.02 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.63 Total: 32.49 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 4.26 Total: -34.81 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -2.05 Total: -71.91 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.06 Total: -31.97 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -68.83 4.81 -64.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190893810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.668 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds