Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 C 1.50701 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00055 * 269.98160 * 4 3 2 6 6 C 1.38219 * 119.99510 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.00126 * 359.76346 * 7 6 5 9 9 C 1.50695 * 120.00472 * 180.25758 * 8 7 6 10 10 N 1.46905 * 109.47231 * 270.21117 * 9 8 7 11 11 C 1.47475 * 110.99586 * 74.02687 * 10 9 8 12 12 C 1.53509 * 87.93234 * 138.70389 * 11 10 9 13 13 O 1.42903 * 114.17309 * 87.62170 * 12 11 10 14 14 C 1.50708 * 114.34559 * 220.31534 * 12 11 10 15 15 H 1.08000 * 119.99856 * 99.27807 * 14 12 11 16 16 C 1.37872 * 119.99690 * 279.27434 * 14 12 11 17 17 N 1.31514 * 120.00339 * 7.45602 * 16 14 12 18 18 Si 1.86802 * 119.99945 * 187.44993 * 16 14 12 19 19 H 1.48493 * 109.47168 * 84.99128 * 18 16 14 20 20 H 1.48497 * 109.47473 * 204.99406 * 18 16 14 21 21 H 1.48508 * 109.46988 * 324.99487 * 18 16 14 22 22 C 1.47476 * 110.99970 * 169.99689 * 10 9 8 23 23 C 1.38220 * 119.99723 * 89.99989 * 4 3 2 24 24 H 1.08998 * 109.47117 * 59.99856 * 1 2 3 25 25 H 1.09005 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47382 * 299.99781 * 1 2 3 27 27 H 1.09003 * 109.47382 * 240.00219 * 2 1 3 28 28 H 1.08995 * 109.47227 * 119.99643 * 2 1 3 29 29 H 1.09003 * 109.46923 * 59.99938 * 3 2 1 30 30 H 1.08998 * 109.47352 * 300.00000 * 3 2 1 31 31 H 1.07990 * 120.00201 * 359.97438 * 5 4 3 32 32 H 1.08010 * 119.99598 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.99857 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47035 * 30.21230 * 9 8 7 35 35 H 1.09007 * 109.47502 * 150.21116 * 9 8 7 36 36 H 1.08997 * 113.47763 * 253.46890 * 11 10 9 37 37 H 1.09008 * 113.48221 * 23.93912 * 11 10 9 38 38 H 0.96703 * 114.00271 * 80.36037 * 13 12 11 39 39 H 0.97006 * 120.00254 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.47702 * 336.06624 * 22 10 9 41 41 H 1.08994 * 113.47681 * 106.47056 * 22 10 9 42 42 H 1.07999 * 119.99618 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2377 1.4432 1.1982 6 6 5.6199 1.4427 1.1987 7 6 6.3116 1.4422 0.0016 8 6 5.6211 1.4372 -1.1955 9 6 6.3750 1.4308 -2.5003 10 7 6.6253 2.8137 -2.9281 11 6 7.6833 3.4363 -2.1108 12 6 8.2357 4.0594 -3.4004 13 8 7.6512 5.3187 -3.7389 14 6 9.7396 4.0562 -3.4972 15 1 10.2417 3.2964 -4.0778 16 6 10.4744 5.0233 -2.8448 17 7 9.8786 5.8582 -2.0216 18 14 12.3164 5.1476 -3.1299 19 1 12.5757 5.9687 -4.3396 20 1 12.9577 5.7853 -1.9520 21 1 12.8801 3.7875 -3.3246 22 6 7.5603 2.8533 -4.0679 23 6 4.2385 1.4425 -1.1961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.6974 1.4441 2.1332 32 1 6.1596 1.4436 2.1343 33 1 7.3916 1.4422 0.0021 34 1 7.3254 0.9136 -2.3682 35 1 5.7842 0.9171 -3.2589 36 1 7.3066 4.1718 -1.4000 37 1 8.3598 2.7145 -1.6528 38 1 8.0198 6.0675 -3.2503 39 1 10.3957 6.5384 -1.5623 40 1 8.2038 1.9758 -4.1324 41 1 7.0792 3.0935 -5.0160 42 1 3.6988 1.4419 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191912679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -6.764358 kcal Electronic energy + Delta-G solvation = -20996.741840 eV Core-core repulsion = 17941.974747 eV Total energy + Delta-G solvation = -3054.767093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72870 -38.66666 -35.33308 -34.27593 -32.14550 -31.77022 -30.92102 -28.04263 -26.43157 -25.67765 -24.81582 -22.74932 -22.24400 -21.29726 -19.94655 -18.63555 -17.18810 -16.26547 -15.68246 -15.17035 -15.03148 -14.87579 -14.63916 -14.07210 -13.85197 -13.72136 -13.45518 -13.28529 -12.52028 -12.34516 -12.14024 -12.00253 -11.91405 -11.79599 -11.48945 -11.29162 -11.17160 -11.00593 -10.87949 -10.72499 -10.54024 -10.46315 -10.20372 -9.99915 -9.21269 -8.72331 -8.54361 -8.39324 -8.12996 -7.84399 -6.24634 -4.33108 1.59047 1.64836 3.21326 3.28473 3.30505 3.95915 4.27519 4.72541 4.80579 4.93750 4.97097 5.02105 5.08500 5.21792 5.32006 5.36002 5.42650 5.57573 5.65882 5.70555 5.74441 5.82587 5.86997 5.88527 5.93923 6.03092 6.09558 6.15990 6.30910 6.31932 6.32875 6.45459 6.68604 6.71890 6.78199 6.93036 7.12222 7.18240 7.27302 7.34592 7.75518 7.97395 8.06602 8.68251 9.36403 9.50097 10.81837 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.003661 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.686401 B = 7645.740912 C = 7955.606652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.078 4.078 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.060 4.060 9 C 0.053 3.947 10 N -0.467 5.467 11 C -0.010 4.010 12 C 0.246 3.754 13 O -0.566 6.566 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.004 3.996 23 C -0.100 4.100 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.383 0.617 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 -10.116 5.674 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.088 4.088 5 C -0.144 4.144 6 C -0.137 4.137 7 C -0.132 4.132 8 C -0.061 4.061 9 C -0.075 4.075 10 N -0.189 5.189 11 C -0.139 4.139 12 C 0.205 3.795 13 O -0.375 6.375 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.530 5.530 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.016 -10.065 5.343 17.299 hybrid contribution 2.173 -0.027 0.531 2.237 sum -10.843 -10.092 5.874 15.935 Atomic orbital electron populations 1.21794 0.95895 1.01493 1.01819 1.21507 0.95408 0.96363 1.02298 1.20599 0.91198 0.97054 1.02723 1.19799 0.95300 1.00540 0.93201 1.20907 0.94175 1.02170 0.97163 1.21051 0.94225 1.00605 0.97796 1.21099 0.99954 1.00012 0.92086 1.19781 0.93690 0.97923 0.94672 1.21643 0.98398 0.93806 0.93650 1.69078 1.32198 1.11606 1.05995 1.24550 0.91204 0.98287 0.99843 1.19381 0.90008 0.81495 0.88653 1.86066 1.65744 1.17584 1.68078 1.21500 0.90912 1.13556 1.31683 0.91673 1.25050 0.99214 0.95187 0.93572 1.69698 1.36844 1.19423 1.27061 0.86495 0.84446 0.78471 0.77922 1.20233 1.21105 1.19837 1.24047 0.93621 0.98992 0.95798 1.20853 0.93472 1.00174 0.97314 0.92672 0.92848 0.92798 0.91869 0.92020 0.91307 0.91068 0.86720 0.86427 0.86295 0.93723 0.90862 0.91358 0.92456 0.76571 0.92126 0.91719 0.91084 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.08 -0.83 5.34 -27.88 -0.15 -0.98 16 4 C -0.09 -1.19 5.13 -104.62 -0.54 -1.72 16 5 C -0.13 -1.66 9.70 -39.58 -0.38 -2.04 16 6 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 7 C -0.11 -1.82 9.11 -39.59 -0.36 -2.18 16 8 C -0.06 -1.00 5.18 -104.63 -0.54 -1.55 16 9 C 0.05 0.94 4.98 -4.98 -0.02 0.91 16 10 N -0.47 -9.92 6.40 -246.11 -1.58 -11.50 16 11 C -0.01 -0.23 6.24 -7.56 -0.05 -0.27 16 12 C 0.25 6.26 1.40 -91.24 -0.13 6.14 16 13 O -0.57 -15.31 13.51 -35.23 -0.48 -15.79 16 14 C -0.54 -14.39 8.66 -34.44 -0.30 -14.69 16 15 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.92 5.33 -17.82 -0.10 1.83 16 17 N -0.89 -24.01 11.64 55.43 0.65 -23.37 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.00 0.09 7.12 -7.56 -0.05 0.04 16 23 C -0.10 -1.51 9.36 -39.58 -0.37 -1.88 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.12 1.91 7.68 -52.49 -0.40 1.51 16 34 H 0.04 0.77 7.51 -51.93 -0.39 0.38 16 35 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.06 1.33 7.29 -51.92 -0.38 0.96 16 38 H 0.38 10.42 7.11 45.56 0.32 10.74 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.06 1.33 7.73 -51.93 -0.40 0.93 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -28.12 344.73 -10.69 -38.82 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.28 Total: 11.77 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.18 Total: -20.53 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.93 Total: -34.87 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.48 Total: -15.79 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.12 -10.69 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191912679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.051 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds