Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 C 1.50701 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00055 * 269.98160 * 4 3 2 6 6 C 1.38219 * 119.99510 * 179.97438 * 5 4 3 7 7 C 1.38252 * 120.00365 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.00126 * 359.76346 * 7 6 5 9 9 C 1.50695 * 120.00472 * 180.25758 * 8 7 6 10 10 N 1.46905 * 109.47231 * 270.21117 * 9 8 7 11 11 C 1.47475 * 110.99586 * 74.02687 * 10 9 8 12 12 C 1.53509 * 87.93234 * 138.70389 * 11 10 9 13 13 O 1.42903 * 114.17309 * 87.62170 * 12 11 10 14 14 C 1.50708 * 114.34559 * 220.31534 * 12 11 10 15 15 H 1.08000 * 119.99856 * 99.27807 * 14 12 11 16 16 C 1.37872 * 119.99690 * 279.27434 * 14 12 11 17 17 N 1.31514 * 120.00339 * 7.45602 * 16 14 12 18 18 Si 1.86802 * 119.99945 * 187.44993 * 16 14 12 19 19 H 1.48493 * 109.47168 * 84.99128 * 18 16 14 20 20 H 1.48497 * 109.47473 * 204.99406 * 18 16 14 21 21 H 1.48508 * 109.46988 * 324.99487 * 18 16 14 22 22 C 1.47476 * 110.99970 * 169.99689 * 10 9 8 23 23 C 1.38220 * 119.99723 * 89.99989 * 4 3 2 24 24 H 1.08998 * 109.47117 * 59.99856 * 1 2 3 25 25 H 1.09005 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47382 * 299.99781 * 1 2 3 27 27 H 1.09003 * 109.47382 * 240.00219 * 2 1 3 28 28 H 1.08995 * 109.47227 * 119.99643 * 2 1 3 29 29 H 1.09003 * 109.46923 * 59.99938 * 3 2 1 30 30 H 1.08998 * 109.47352 * 300.00000 * 3 2 1 31 31 H 1.07990 * 120.00201 * 359.97438 * 5 4 3 32 32 H 1.08010 * 119.99598 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.99857 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47035 * 30.21230 * 9 8 7 35 35 H 1.09007 * 109.47502 * 150.21116 * 9 8 7 36 36 H 1.08997 * 113.47763 * 253.46890 * 11 10 9 37 37 H 1.09008 * 113.48221 * 23.93912 * 11 10 9 38 38 H 0.96703 * 114.00271 * 80.36037 * 13 12 11 39 39 H 0.97006 * 120.00254 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.47702 * 336.06624 * 22 10 9 41 41 H 1.08994 * 113.47681 * 106.47056 * 22 10 9 42 42 H 1.07999 * 119.99618 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2377 1.4432 1.1982 6 6 5.6199 1.4427 1.1987 7 6 6.3116 1.4422 0.0016 8 6 5.6211 1.4372 -1.1955 9 6 6.3750 1.4308 -2.5003 10 7 6.6253 2.8137 -2.9281 11 6 7.6833 3.4363 -2.1108 12 6 8.2357 4.0594 -3.4004 13 8 7.6512 5.3187 -3.7389 14 6 9.7396 4.0562 -3.4972 15 1 10.2417 3.2964 -4.0778 16 6 10.4744 5.0233 -2.8448 17 7 9.8786 5.8582 -2.0216 18 14 12.3164 5.1476 -3.1299 19 1 12.5757 5.9687 -4.3396 20 1 12.9577 5.7853 -1.9520 21 1 12.8801 3.7875 -3.3246 22 6 7.5603 2.8533 -4.0679 23 6 4.2385 1.4425 -1.1961 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.6974 1.4441 2.1332 32 1 6.1596 1.4436 2.1343 33 1 7.3916 1.4422 0.0021 34 1 7.3254 0.9136 -2.3682 35 1 5.7842 0.9171 -3.2589 36 1 7.3066 4.1718 -1.4000 37 1 8.3598 2.7145 -1.6528 38 1 8.0198 6.0675 -3.2503 39 1 10.3957 6.5384 -1.5623 40 1 8.2038 1.9758 -4.1324 41 1 7.0792 3.0935 -5.0160 42 1 3.6988 1.4419 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191912679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -24.480660 kcal Electronic energy + Delta-G solvation = -20997.510076 eV Core-core repulsion = 17941.974747 eV Total energy + Delta-G solvation = -3055.535330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25125 -40.05352 -36.58209 -35.79822 -34.19437 -33.10112 -31.89646 -29.68454 -27.48837 -27.31107 -26.60502 -24.33964 -23.18173 -22.36240 -21.09764 -20.54062 -19.16672 -17.43538 -17.10992 -16.84730 -16.68048 -16.12721 -15.93165 -15.75328 -15.25623 -14.82680 -14.55992 -14.33500 -14.14955 -13.95429 -13.52472 -13.44910 -13.23256 -12.92629 -12.83093 -12.73139 -12.68035 -12.47939 -12.27367 -12.02484 -12.01814 -11.71536 -11.56112 -11.44505 -11.08273 -10.70794 -10.15540 -9.74148 -9.64217 -9.44582 -8.24915 -6.41257 0.44119 0.51099 1.41398 1.44046 1.52531 2.37143 2.79474 2.96067 3.35460 3.70180 3.82136 3.94011 4.05989 4.14643 4.20792 4.24615 4.28005 4.32802 4.41038 4.52257 4.53989 4.59997 4.67445 4.71765 4.83359 4.89347 4.90744 5.04560 5.12173 5.15748 5.16156 5.30531 5.31825 5.36849 5.39756 5.48112 5.58876 5.71560 5.73076 5.76664 5.99499 6.14621 6.30393 6.63411 7.31195 7.38346 8.80688 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.003661 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.686401 B = 7645.740912 C = 7955.606652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.076 4.076 4 C -0.087 4.087 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.134 4.134 8 C -0.081 4.081 9 C 0.056 3.944 10 N -0.470 5.470 11 C 0.009 3.991 12 C 0.219 3.781 13 O -0.577 6.577 14 C -0.561 4.561 15 H 0.065 0.935 16 C 0.029 3.971 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.013 3.987 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 -11.087 6.381 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.113 4.113 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.141 4.141 7 C -0.153 4.153 8 C -0.082 4.082 9 C -0.072 4.072 10 N -0.192 5.192 11 C -0.120 4.120 12 C 0.178 3.822 13 O -0.385 6.385 14 C -0.599 4.599 15 H 0.083 0.917 16 C -0.171 4.171 17 N -0.552 5.552 18 Si 0.789 3.211 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.115 4.115 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.798 -11.052 6.042 18.683 hybrid contribution 2.336 0.256 0.354 2.376 sum -11.462 -10.796 6.396 16.995 Atomic orbital electron populations 1.21774 0.94616 1.02163 1.02215 1.21468 0.96471 0.95213 1.02058 1.20651 0.89125 0.98179 1.03391 1.20151 0.96920 0.98990 0.92669 1.21281 0.93918 1.00746 0.98336 1.21336 0.95000 0.99844 0.97873 1.21167 0.99708 1.01427 0.92988 1.19779 0.94427 0.99765 0.94214 1.21661 0.98972 0.91568 0.94986 1.68977 1.30990 1.14238 1.05012 1.24207 0.91609 0.97666 0.98557 1.19737 0.90115 0.81715 0.90631 1.86050 1.66010 1.18185 1.68272 1.21754 0.91860 1.14132 1.32127 0.91715 1.25793 1.03415 0.94794 0.93146 1.69787 1.38328 1.19706 1.27404 0.85487 0.79326 0.78550 0.77755 1.20006 1.20665 1.19234 1.23967 0.93654 0.97926 0.95976 1.21012 0.93008 1.00590 0.98444 0.92628 0.92086 0.92077 0.92607 0.91812 0.89957 0.91102 0.83834 0.84416 0.87328 0.93672 0.89044 0.94024 0.92760 0.77220 0.91932 0.90277 0.90766 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 3 C -0.08 -1.44 5.34 29.85 0.16 -1.28 16 4 C -0.09 -2.19 5.13 -19.86 -0.10 -2.29 16 5 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 6 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 7 C -0.13 -4.33 9.11 22.27 0.20 -4.12 16 8 C -0.08 -2.70 5.18 -19.87 -0.10 -2.80 16 9 C 0.06 1.95 4.98 85.55 0.43 2.38 16 10 N -0.47 -20.05 6.40 -932.94 -5.97 -26.03 16 11 C 0.01 0.44 6.24 83.57 0.52 0.96 16 12 C 0.22 11.31 1.40 -11.20 -0.02 11.30 16 13 O -0.58 -31.91 13.51 -148.98 -2.01 -33.93 16 14 C -0.56 -30.21 8.66 25.60 0.22 -29.99 16 15 H 0.06 3.40 7.82 -2.91 -0.02 3.37 16 16 C 0.03 1.56 5.33 84.65 0.45 2.01 16 17 N -0.91 -49.80 11.64 21.45 0.25 -49.55 16 18 Si 0.96 41.82 29.54 68.60 2.03 43.84 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C 0.01 0.59 7.12 83.57 0.60 1.18 16 23 C -0.11 -3.30 9.36 22.27 0.21 -3.09 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.07 1.35 8.09 -2.39 -0.02 1.34 16 31 H 0.14 2.61 8.06 -2.92 -0.02 2.58 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.11 3.61 7.68 -2.91 -0.02 3.59 16 34 H 0.05 1.56 7.51 -2.39 -0.02 1.54 16 35 H 0.09 2.82 8.09 -2.38 -0.02 2.80 16 36 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.60 7.29 -2.38 -0.02 2.58 16 38 H 0.38 21.19 7.11 -74.06 -0.53 20.67 16 39 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 40 H 0.08 3.21 7.73 -2.38 -0.02 3.19 16 41 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -59.72 344.73 -1.35 -61.07 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.46 Total: 39.14 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.90 Total: -34.55 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -5.72 Total: -75.57 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -2.01 Total: -33.93 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -59.72 -1.35 -61.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191912679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.589 kcal (2) G-P(sol) polarization free energy of solvation -59.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds