Wall clock time and date at job start Mon Mar 30 2020 02:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47521 * 120.00201 * 2 1 3 5 5 C 1.38230 * 119.99956 * 119.99630 * 4 2 1 6 6 C 1.38233 * 119.99732 * 180.02562 * 5 4 2 7 7 C 1.38233 * 120.00355 * 359.95920 * 6 5 4 8 8 C 1.50701 * 120.00277 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46965 * 90.00105 * 8 7 6 10 10 C 1.47474 * 110.99920 * 74.02415 * 9 8 7 11 11 C 1.53518 * 87.93184 * 138.70422 * 10 9 8 12 12 O 1.42903 * 114.34124 * 87.63531 * 11 10 9 13 13 C 1.50700 * 114.17448 * 220.32970 * 11 10 9 14 14 H 1.08005 * 119.99373 * 93.83864 * 13 11 10 15 15 C 1.37873 * 120.00191 * 273.84179 * 13 11 10 16 16 N 1.31512 * 119.99755 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99949 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46916 * 60.00119 * 17 15 13 19 19 H 1.48502 * 109.47038 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47301 * 299.99909 * 17 15 13 21 21 C 1.47472 * 111.00187 * 169.99871 * 9 8 7 22 22 C 1.38236 * 119.99662 * 0.27430 * 7 6 5 23 23 C 1.38230 * 120.00026 * 359.53747 * 22 7 6 24 24 H 1.09007 * 109.46656 * 299.99750 * 1 2 3 25 25 H 1.08992 * 109.47339 * 59.99813 * 1 2 3 26 26 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46656 * 240.00250 * 2 1 3 28 28 H 1.08998 * 109.47307 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46786 * 300.00410 * 3 2 1 30 30 H 1.08992 * 109.46958 * 60.00017 * 3 2 1 31 31 H 1.07996 * 120.00255 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.00088 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.47133 * 330.00143 * 8 7 6 34 34 H 1.08996 * 109.47320 * 209.99883 * 8 7 6 35 35 H 1.08998 * 113.48515 * 253.46819 * 10 9 8 36 36 H 1.09001 * 113.47583 * 23.94235 * 10 9 8 37 37 H 0.96699 * 113.99911 * 86.08197 * 12 11 10 38 38 H 0.97007 * 119.99659 * 180.02562 * 16 15 13 39 39 H 1.08999 * 113.47718 * 336.06531 * 21 9 8 40 40 H 1.09004 * 113.47441 * 106.46993 * 21 9 8 41 41 H 1.08004 * 120.00242 * 179.73110 * 22 7 6 42 42 H 1.08001 * 120.00122 * 180.21081 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2875 -2.4863 2.2321 7 6 2.9540 -2.0138 3.4877 8 6 3.4554 -2.7249 4.7181 9 7 4.7501 -2.1575 5.1181 10 6 4.5770 -0.8290 5.7346 11 6 5.6326 -1.2347 6.7728 12 8 6.9794 -0.9608 6.3814 13 6 5.3191 -0.7897 8.1780 14 1 4.8034 -1.4565 8.8532 15 6 5.6905 0.4687 8.6017 16 7 6.3189 1.2804 7.7796 17 14 5.3013 1.0206 10.3433 18 1 5.9604 0.1072 11.3109 19 1 5.8027 2.4033 10.5481 20 1 3.8319 0.9899 10.5556 21 6 5.1594 -2.6575 6.4437 22 6 2.1553 -0.8927 3.6146 23 6 1.6981 -0.2385 2.4860 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.0883 -2.2031 0.1226 32 1 3.9081 -3.3647 2.1330 33 1 3.5755 -3.7862 4.5008 34 1 2.7376 -2.5989 5.5285 35 1 4.8934 -0.0074 5.0920 36 1 3.5859 -0.6739 6.1609 37 1 7.2749 -0.0640 6.5898 38 1 6.5806 2.1656 8.0778 39 1 4.3237 -2.9905 7.0593 40 1 5.9687 -3.3865 6.4019 41 1 1.8910 -0.5261 4.5955 42 1 1.0769 0.6394 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191916859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:14 Heat of formation + Delta-G solvation = -3.189828 kcal Electronic energy + Delta-G solvation = -21185.397505 eV Core-core repulsion = 18130.785415 eV Total energy + Delta-G solvation = -3054.612090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78502 -38.78092 -35.67012 -34.15514 -32.05079 -31.01395 -30.67306 -27.76349 -27.23578 -25.65942 -24.86498 -23.18706 -22.42814 -21.19919 -19.76509 -18.58682 -17.28126 -16.24950 -15.45246 -15.15285 -14.99936 -14.88863 -14.23143 -14.02933 -13.72004 -13.66557 -13.55745 -13.09798 -12.73175 -12.49481 -12.37822 -12.09995 -11.84206 -11.51396 -11.41489 -11.31116 -11.18808 -11.02126 -10.83289 -10.75907 -10.52234 -10.46300 -10.18632 -9.97736 -9.31065 -8.67624 -8.65535 -8.34550 -8.07855 -7.85892 -6.26272 -4.36315 1.57176 1.66529 3.20680 3.26324 3.28566 3.96079 4.25304 4.65220 4.76307 4.93867 5.02268 5.11654 5.12278 5.22943 5.26558 5.38461 5.51120 5.55474 5.65826 5.72517 5.77579 5.86373 5.89090 5.89660 5.99920 6.09884 6.12638 6.17187 6.28730 6.29991 6.33282 6.43576 6.66904 6.71281 6.80577 6.93082 7.08840 7.18234 7.26680 7.36711 7.77089 7.96047 8.04776 8.65517 9.33764 9.70339 10.79650 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.004116 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.279813 B = 6800.349913 C = 7334.627096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.087 4.087 5 C -0.122 4.122 6 C -0.101 4.101 7 C -0.066 4.066 8 C 0.053 3.947 9 N -0.464 5.464 10 C -0.015 4.015 11 C 0.247 3.753 12 O -0.570 6.570 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 C 0.002 3.998 22 C -0.107 4.107 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.390 0.610 38 H 0.272 0.728 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -2.422 -12.281 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.075 4.075 9 N -0.187 5.187 10 C -0.145 4.145 11 C 0.206 3.794 12 O -0.382 6.382 13 C -0.574 4.574 14 H 0.084 0.916 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.201 1.201 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.245 0.755 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.705 -2.953 -13.098 16.567 hybrid contribution -0.850 1.011 1.732 2.178 sum -10.555 -1.942 -11.366 15.632 Atomic orbital electron populations 1.21851 0.94630 1.01823 1.01717 1.20087 0.95685 0.96033 0.95478 1.21861 1.01480 0.95153 1.01697 1.19755 0.98524 0.96005 0.94415 1.20955 0.98793 0.95981 0.98241 1.20968 0.99022 1.00136 0.91800 1.19783 0.96334 0.95782 0.94764 1.21642 0.93120 0.98484 0.94252 1.69059 1.20605 1.05506 1.23490 1.24628 1.00713 0.91560 0.97558 1.19353 0.80725 0.88840 0.90530 1.86029 1.28337 1.39125 1.84748 1.21556 1.38189 0.99879 0.97808 0.91638 1.25056 0.93922 0.96019 0.98054 1.69293 1.39962 1.08906 1.35663 0.86462 0.78812 0.77762 0.83867 1.19923 1.20980 1.20062 1.24099 0.99225 1.00207 0.89180 1.21086 0.97728 0.95196 0.98580 1.20858 1.00751 0.99779 0.91905 0.92460 0.92660 0.92663 0.90795 0.92400 0.92678 0.92392 0.86603 0.86249 0.90842 0.93795 0.91517 0.92507 0.75451 0.91768 0.91834 0.91044 0.86312 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.01 37.16 0.33 -0.95 16 2 C -0.05 -0.56 3.09 -91.77 -0.28 -0.84 16 3 C -0.14 -1.45 9.01 37.16 0.33 -1.11 16 4 C -0.09 -1.13 4.78 -104.63 -0.50 -1.63 16 5 C -0.12 -1.64 9.67 -39.59 -0.38 -2.02 16 6 C -0.10 -1.52 9.70 -39.59 -0.38 -1.90 16 7 C -0.07 -1.10 5.18 -104.62 -0.54 -1.64 16 8 C 0.05 0.93 4.98 -4.97 -0.02 0.91 16 9 N -0.46 -9.92 6.40 -246.11 -1.58 -11.50 16 10 C -0.02 -0.36 6.26 -7.55 -0.05 -0.41 16 11 C 0.25 6.36 1.57 -91.24 -0.14 6.21 16 12 O -0.57 -15.79 13.54 -35.23 -0.48 -16.27 16 13 C -0.54 -14.37 8.68 -34.44 -0.30 -14.66 16 14 H 0.07 1.71 7.81 -52.48 -0.41 1.29 16 15 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 16 N -0.90 -24.25 11.02 55.43 0.61 -23.64 16 17 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.00 0.04 7.12 -7.56 -0.05 -0.02 16 22 C -0.11 -1.71 9.13 -39.58 -0.36 -2.07 16 23 C -0.11 -1.61 8.71 -39.58 -0.34 -1.96 16 24 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 31 H 0.12 1.29 7.95 -52.49 -0.42 0.87 16 32 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.04 0.76 7.50 -51.93 -0.39 0.37 16 35 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.06 1.30 7.33 -51.93 -0.38 0.92 16 37 H 0.39 10.94 6.33 45.56 0.29 11.23 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.06 1.31 7.72 -51.93 -0.40 0.91 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.12 1.88 7.73 -52.48 -0.41 1.47 16 42 H 0.12 1.43 7.10 -52.49 -0.37 1.05 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -28.22 339.54 -10.32 -38.54 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.18 Total: 12.70 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.79 Total: -20.30 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.97 Total: -35.14 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.27 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.22 -10.32 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191916859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.353 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds