Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47244 * 2 1 4 4 C 1.50700 * 109.47521 * 120.00201 * 2 1 3 5 5 C 1.38230 * 119.99956 * 119.99630 * 4 2 1 6 6 C 1.38233 * 119.99732 * 180.02562 * 5 4 2 7 7 C 1.38233 * 120.00355 * 359.95920 * 6 5 4 8 8 C 1.50701 * 120.00277 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.46965 * 90.00105 * 8 7 6 10 10 C 1.47474 * 110.99920 * 74.02415 * 9 8 7 11 11 C 1.53518 * 87.93184 * 138.70422 * 10 9 8 12 12 O 1.42903 * 114.34124 * 87.63531 * 11 10 9 13 13 C 1.50700 * 114.17448 * 220.32970 * 11 10 9 14 14 H 1.08005 * 119.99373 * 93.83864 * 13 11 10 15 15 C 1.37873 * 120.00191 * 273.84179 * 13 11 10 16 16 N 1.31512 * 119.99755 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99949 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46916 * 60.00119 * 17 15 13 19 19 H 1.48502 * 109.47038 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47301 * 299.99909 * 17 15 13 21 21 C 1.47472 * 111.00187 * 169.99871 * 9 8 7 22 22 C 1.38236 * 119.99662 * 0.27430 * 7 6 5 23 23 C 1.38230 * 120.00026 * 359.53747 * 22 7 6 24 24 H 1.09007 * 109.46656 * 299.99750 * 1 2 3 25 25 H 1.08992 * 109.47339 * 59.99813 * 1 2 3 26 26 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46656 * 240.00250 * 2 1 3 28 28 H 1.08998 * 109.47307 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46786 * 300.00410 * 3 2 1 30 30 H 1.08992 * 109.46958 * 60.00017 * 3 2 1 31 31 H 1.07996 * 120.00255 * 0.02562 * 5 4 2 32 32 H 1.08007 * 120.00088 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.47133 * 330.00143 * 8 7 6 34 34 H 1.08996 * 109.47320 * 209.99883 * 8 7 6 35 35 H 1.08998 * 113.48515 * 253.46819 * 10 9 8 36 36 H 1.09001 * 113.47583 * 23.94235 * 10 9 8 37 37 H 0.96699 * 113.99911 * 86.08197 * 12 11 10 38 38 H 0.97007 * 119.99659 * 180.02562 * 16 15 13 39 39 H 1.08999 * 113.47718 * 336.06531 * 21 9 8 40 40 H 1.09004 * 113.47441 * 106.46993 * 21 9 8 41 41 H 1.08004 * 120.00242 * 179.73110 * 22 7 6 42 42 H 1.08001 * 120.00122 * 180.21081 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2875 -2.4863 2.2321 7 6 2.9540 -2.0138 3.4877 8 6 3.4554 -2.7249 4.7181 9 7 4.7501 -2.1575 5.1181 10 6 4.5770 -0.8290 5.7346 11 6 5.6326 -1.2347 6.7728 12 8 6.9794 -0.9608 6.3814 13 6 5.3191 -0.7897 8.1780 14 1 4.8034 -1.4565 8.8532 15 6 5.6905 0.4687 8.6017 16 7 6.3189 1.2804 7.7796 17 14 5.3013 1.0206 10.3433 18 1 5.9604 0.1072 11.3109 19 1 5.8027 2.4033 10.5481 20 1 3.8319 0.9899 10.5556 21 6 5.1594 -2.6575 6.4437 22 6 2.1553 -0.8927 3.6146 23 6 1.6981 -0.2385 2.4860 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.0883 -2.2031 0.1226 32 1 3.9081 -3.3647 2.1330 33 1 3.5755 -3.7862 4.5008 34 1 2.7376 -2.5989 5.5285 35 1 4.8934 -0.0074 5.0920 36 1 3.5859 -0.6739 6.1609 37 1 7.2749 -0.0640 6.5898 38 1 6.5806 2.1656 8.0778 39 1 4.3237 -2.9905 7.0593 40 1 5.9687 -3.3865 6.4019 41 1 1.8910 -0.5261 4.5955 42 1 1.0769 0.6394 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191916859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = -21.200189 kcal Electronic energy + Delta-G solvation = -21186.178493 eV Core-core repulsion = 18130.785415 eV Total energy + Delta-G solvation = -3055.393078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25621 -40.18583 -36.88191 -35.86348 -34.11061 -32.32436 -31.80916 -29.37325 -27.96720 -27.35880 -26.67884 -24.58282 -23.64968 -22.46583 -20.77479 -20.49954 -19.26881 -17.39860 -17.03852 -16.81751 -16.64211 -16.10560 -15.85092 -15.63535 -14.98523 -14.75417 -14.44456 -14.29538 -14.11631 -14.00911 -13.88961 -13.36428 -13.28543 -13.03778 -12.85550 -12.79614 -12.58434 -12.35444 -12.22464 -12.08497 -11.99877 -11.88708 -11.49225 -11.44446 -11.18284 -10.66244 -10.11852 -9.80596 -9.71088 -9.36730 -8.26083 -6.44496 0.42867 0.53230 1.42557 1.44062 1.52439 2.36406 2.79614 2.94982 3.35927 3.71133 3.81909 3.89429 4.00934 4.12609 4.19359 4.22849 4.34345 4.36382 4.43263 4.52996 4.55020 4.60288 4.68732 4.75086 4.81793 4.89405 4.97350 5.00599 5.08439 5.13211 5.18826 5.20828 5.34615 5.37309 5.39953 5.41323 5.58155 5.73852 5.75647 5.77376 5.95241 6.14137 6.30985 6.61388 7.28807 7.54360 8.79058 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.004116 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.279813 B = 6800.349913 C = 7334.627096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.090 4.090 8 C 0.056 3.944 9 N -0.469 5.469 10 C 0.003 3.997 11 C 0.218 3.782 12 O -0.584 6.584 13 C -0.560 4.560 14 H 0.068 0.932 15 C 0.027 3.973 16 N -0.920 5.920 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.269 1.269 21 C 0.011 3.989 22 C -0.125 4.125 23 C -0.121 4.121 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.383 0.617 38 H 0.275 0.725 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 -2.586 -13.212 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.091 4.091 8 C -0.071 4.071 9 N -0.191 5.191 10 C -0.127 4.127 11 C 0.177 3.823 12 O -0.396 6.396 13 C -0.598 4.598 14 H 0.086 0.914 15 C -0.173 4.173 16 N -0.562 5.562 17 Si 0.794 3.206 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.138 4.138 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.015 -3.136 -14.038 18.117 hybrid contribution -0.459 1.061 1.925 2.246 sum -11.475 -2.075 -12.113 16.813 Atomic orbital electron populations 1.21833 0.93449 1.02032 1.02458 1.20162 0.96608 0.95887 0.94490 1.21864 1.00710 0.95157 1.02449 1.20143 0.97430 0.95668 0.95141 1.21296 0.98167 0.95792 0.98943 1.21165 0.99215 1.00672 0.91767 1.19778 0.97741 0.96621 0.94917 1.21659 0.91160 0.99422 0.94908 1.68955 1.23214 1.04193 1.22756 1.24303 0.99910 0.91966 0.96494 1.19751 0.80204 0.91482 0.90878 1.86008 1.29854 1.38714 1.85005 1.21837 1.38863 1.00498 0.98591 0.91430 1.25841 0.93613 0.95949 1.01872 1.69378 1.40352 1.09155 1.37274 0.85435 0.78807 0.77314 0.79046 1.19567 1.20534 1.19346 1.24012 0.99654 0.98254 0.89828 1.21154 0.98545 0.95663 0.98969 1.21062 1.00798 1.00090 0.91894 0.92855 0.90845 0.92730 0.89402 0.93600 0.90635 0.93002 0.83991 0.85360 0.88982 0.93656 0.94183 0.92428 0.76206 0.91556 0.90235 0.90907 0.87220 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.01 71.98 0.65 -1.50 16 2 C -0.05 -0.96 3.09 -11.54 -0.04 -0.99 16 3 C -0.14 -2.59 9.01 71.98 0.65 -1.94 16 4 C -0.08 -2.03 4.78 -19.87 -0.09 -2.13 16 5 C -0.12 -3.10 9.67 22.27 0.22 -2.89 16 6 C -0.11 -3.18 9.70 22.27 0.22 -2.96 16 7 C -0.09 -2.96 5.18 -19.87 -0.10 -3.06 16 8 C 0.06 1.95 4.98 85.56 0.43 2.37 16 9 N -0.47 -20.06 6.40 -932.94 -5.97 -26.03 16 10 C 0.00 0.14 6.26 83.57 0.52 0.67 16 11 C 0.22 11.39 1.57 -11.19 -0.02 11.37 16 12 O -0.58 -33.18 13.54 -148.98 -2.02 -35.20 16 13 C -0.56 -30.24 8.68 25.60 0.22 -30.02 16 14 H 0.07 3.52 7.81 -2.91 -0.02 3.49 16 15 C 0.03 1.42 5.39 84.65 0.46 1.88 16 16 N -0.92 -50.46 11.02 21.45 0.24 -50.22 16 17 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 C 0.01 0.49 7.12 83.57 0.60 1.09 16 22 C -0.12 -3.98 9.13 22.27 0.20 -3.78 16 23 C -0.12 -3.29 8.71 22.27 0.19 -3.09 16 24 H 0.05 0.86 7.39 -2.38 -0.02 0.84 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.37 7.88 -2.38 -0.02 1.35 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 0.98 7.39 -2.39 -0.02 0.96 16 31 H 0.14 2.74 7.95 -2.91 -0.02 2.72 16 32 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.09 2.81 8.08 -2.39 -0.02 2.79 16 34 H 0.05 1.55 7.50 -2.39 -0.02 1.53 16 35 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.71 7.33 -2.39 -0.02 2.69 16 37 H 0.38 22.26 6.33 -74.06 -0.47 21.80 16 38 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 39 H 0.08 3.22 7.72 -2.39 -0.02 3.20 16 40 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.11 3.58 7.73 -2.91 -0.02 3.56 16 42 H 0.13 3.08 7.10 -2.91 -0.02 3.06 16 Total: -1.00 -60.26 339.54 -1.11 -61.37 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.53 Total: 41.43 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 4.10 Total: -34.99 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -5.74 Total: -76.25 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -2.02 Total: -35.20 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -60.26 -1.11 -61.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191916859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.165 kcal (2) G-P(sol) polarization free energy of solvation -60.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds