Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47048 * 2 1 4 4 C 1.38239 * 119.99936 * 90.00442 * 3 2 1 5 5 C 1.38234 * 120.00343 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99785 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99813 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46724 * 90.00285 * 7 6 5 9 9 C 1.50704 * 109.46724 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00168 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99778 * 180.27315 * 9 8 7 12 12 C 1.46502 * 119.99860 * 179.72308 * 11 9 8 13 13 H 1.08997 * 109.46913 * 35.00039 * 12 11 9 14 14 C 1.53004 * 109.47310 * 275.00047 * 12 11 9 15 15 C 1.50698 * 109.47123 * 154.99927 * 12 11 9 16 16 H 1.08006 * 119.99938 * 35.01003 * 15 12 11 17 17 C 1.37874 * 120.00063 * 215.00080 * 15 12 11 18 18 N 1.31520 * 119.99817 * 184.91787 * 17 15 12 19 19 Si 1.86793 * 120.00212 * 4.91927 * 17 15 12 20 20 H 1.48500 * 109.47146 * 84.83132 * 19 17 15 21 21 H 1.48497 * 109.47562 * 204.83241 * 19 17 15 22 22 H 1.48500 * 109.47065 * 324.83043 * 19 17 15 23 23 C 1.38238 * 120.00119 * 0.25531 * 6 5 4 24 24 C 1.38232 * 120.00323 * 270.02270 * 3 2 1 25 25 H 1.09000 * 109.47132 * 299.99589 * 1 2 3 26 26 H 1.08994 * 109.47377 * 59.99726 * 1 2 3 27 27 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46975 * 240.00694 * 2 1 3 29 29 H 1.08999 * 109.47629 * 120.00649 * 2 1 3 30 30 H 1.08004 * 119.99569 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99903 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47047 * 329.99839 * 7 6 5 33 33 H 1.09008 * 109.46857 * 210.00239 * 7 6 5 34 34 H 1.08994 * 109.47475 * 60.00335 * 8 7 6 35 35 H 1.08994 * 109.47311 * 299.99510 * 8 7 6 36 36 H 0.97000 * 120.00491 * 359.72494 * 11 9 8 37 37 H 1.08994 * 109.47323 * 295.03611 * 14 12 11 38 38 H 1.09006 * 109.46807 * 55.03623 * 14 12 11 39 39 H 1.09001 * 109.47218 * 175.03487 * 14 12 11 40 40 H 0.96998 * 119.99798 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.99880 * 179.72533 * 23 6 5 42 42 H 1.07996 * 120.00083 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9543 4.0272 0.0002 7 6 3.4567 5.4481 0.0003 8 6 4.9866 5.4480 0.0002 9 6 5.4890 6.8688 0.0009 10 8 4.7008 7.7907 0.0010 11 7 6.8140 7.1151 -0.0047 12 6 7.3024 8.4963 -0.0101 13 1 6.6320 9.1210 0.5802 14 6 7.3485 9.0154 -1.4487 15 6 8.6860 8.5423 0.5851 16 1 9.3718 7.7240 0.4215 17 6 9.0767 9.6289 1.3385 18 7 10.3138 9.7147 1.7767 19 14 7.8491 10.9793 1.7367 20 1 7.0692 10.5995 2.9420 21 1 8.5756 12.2480 1.9967 22 1 6.9263 11.1639 0.5879 23 6 2.7184 3.3776 -1.1970 24 6 2.2622 2.0726 -1.1971 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0824 1.5633 2.1325 31 1 2.9045 3.8844 2.1326 32 1 3.0933 5.9618 0.8903 33 1 3.0932 5.9620 -0.8897 34 1 5.3499 4.9343 -0.8899 35 1 5.3500 4.9342 0.8900 36 1 7.4444 6.3779 -0.0051 37 1 8.0845 8.4466 -2.0167 38 1 6.3667 8.9002 -1.9081 39 1 7.6270 10.0692 -1.4459 40 1 10.5885 10.4790 2.3070 41 1 2.8941 3.8883 -2.1322 42 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194722794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -46.987791 kcal Electronic energy + Delta-G solvation = -20196.354521 eV Core-core repulsion = 17139.843209 eV Total energy + Delta-G solvation = -3056.511312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76767 -38.89413 -35.39635 -34.73531 -32.55180 -32.26717 -31.01759 -30.02483 -28.50769 -25.35068 -24.95287 -22.82598 -22.76272 -20.89344 -20.29895 -19.50036 -17.41436 -16.38844 -15.95333 -15.83937 -15.42252 -15.04305 -14.83803 -14.14209 -13.92064 -13.84683 -13.48366 -13.26364 -13.14572 -12.79072 -12.51042 -12.36641 -12.31913 -11.90593 -11.58321 -11.54663 -11.38579 -11.10977 -11.05772 -10.89549 -10.79581 -10.75394 -10.56190 -9.87621 -9.19935 -9.14852 -9.01092 -8.70397 -8.54448 -8.05729 -6.23271 -4.26783 1.22894 1.31439 3.25920 3.33554 3.34580 3.41777 3.61458 4.07300 4.32889 4.53741 4.61706 4.88892 4.89842 4.91490 5.07442 5.16102 5.22181 5.24268 5.27217 5.38727 5.44257 5.55346 5.60530 5.69453 5.83445 5.86290 5.88095 5.98062 6.07898 6.27575 6.33852 6.36137 6.49132 6.53553 6.62632 6.69319 6.92803 6.95473 7.20570 7.39680 7.58121 8.15333 8.60066 8.77595 9.02568 9.39142 10.88536 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.002874 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.630112 B = 9739.832234 C = 9810.410180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.065 4.065 8 C -0.135 4.135 9 C 0.499 3.501 10 O -0.562 6.562 11 N -0.705 5.705 12 C 0.230 3.770 13 H 0.049 0.951 14 C -0.147 4.147 15 C -0.530 4.530 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.393 0.607 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.051 0.949 40 H 0.268 0.732 41 H 0.122 0.878 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 -17.880 -3.926 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.079 4.079 7 C -0.103 4.103 8 C -0.175 4.175 9 C 0.284 3.716 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.127 3.873 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.568 4.568 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.132 4.132 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.226 0.774 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.729 -17.078 -3.816 24.210 hybrid contribution -0.075 0.391 0.308 0.503 sum -16.804 -16.687 -3.509 23.941 Atomic orbital electron populations 1.21750 0.94855 1.01544 1.02247 1.20525 0.96085 0.92849 1.02692 1.19859 0.99881 0.96197 0.93301 1.20998 1.00155 0.94922 0.97404 1.21096 0.99455 0.94745 0.97847 1.20003 0.98530 0.96303 0.93112 1.20335 0.93893 0.91614 1.04424 1.21655 0.96268 0.95469 1.04145 1.20599 0.83357 0.90787 0.76813 1.90638 1.55593 1.46532 1.51480 1.46649 1.05634 1.10905 1.72174 1.19116 0.95257 0.79290 0.93629 0.93285 1.22212 0.98714 1.00795 0.98857 1.21023 0.96368 1.06772 1.32632 0.90363 1.24953 0.95180 0.97850 0.94459 1.69888 1.16534 1.30687 1.35505 0.86877 0.81584 0.81367 0.79965 1.19875 1.21206 1.18497 1.21080 0.99622 0.94730 0.97774 1.20986 1.00261 0.94897 0.97381 0.92566 0.92585 0.92530 0.91183 0.91167 0.86336 0.85960 0.90248 0.90306 0.89374 0.89249 0.77354 0.93461 0.95258 0.92984 0.92258 0.86029 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.59 16 2 C -0.08 -0.60 6.06 -27.89 -0.17 -0.77 16 3 C -0.09 -0.87 5.13 -104.63 -0.54 -1.41 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.11 -1.24 9.70 -39.59 -0.38 -1.63 16 6 C -0.08 -0.92 5.13 -104.62 -0.54 -1.46 16 7 C -0.06 -0.85 4.63 -27.88 -0.13 -0.98 16 8 C -0.14 -1.85 5.68 -27.88 -0.16 -2.01 16 9 C 0.50 9.45 7.79 -10.98 -0.09 9.36 16 10 O -0.56 -12.73 15.65 5.55 0.09 -12.64 16 11 N -0.71 -14.20 5.07 -54.93 -0.28 -14.48 16 12 C 0.23 5.52 2.22 -69.08 -0.15 5.36 16 13 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 14 C -0.15 -3.26 9.47 37.16 0.35 -2.91 16 15 C -0.53 -14.32 9.05 -34.44 -0.31 -14.63 16 16 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 19 Si 0.88 21.76 26.99 -169.99 -4.59 17.17 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.26 -6.40 6.82 56.52 0.39 -6.01 16 23 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 24 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 33 H 0.08 1.07 8.04 -51.92 -0.42 0.66 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.39 6.96 8.59 -40.82 -0.35 6.60 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.57 351.35 -8.63 -40.19 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.92 Total: 4.18 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -3.00 Total: -14.18 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.50 Total: -40.01 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.57 -8.63 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.797 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds