Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47048 * 2 1 4 4 C 1.38239 * 119.99936 * 90.00442 * 3 2 1 5 5 C 1.38234 * 120.00343 * 179.97438 * 4 3 2 6 6 C 1.38231 * 119.99785 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99813 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46724 * 90.00285 * 7 6 5 9 9 C 1.50704 * 109.46724 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00168 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99778 * 180.27315 * 9 8 7 12 12 C 1.46502 * 119.99860 * 179.72308 * 11 9 8 13 13 H 1.08997 * 109.46913 * 35.00039 * 12 11 9 14 14 C 1.53004 * 109.47310 * 275.00047 * 12 11 9 15 15 C 1.50698 * 109.47123 * 154.99927 * 12 11 9 16 16 H 1.08006 * 119.99938 * 35.01003 * 15 12 11 17 17 C 1.37874 * 120.00063 * 215.00080 * 15 12 11 18 18 N 1.31520 * 119.99817 * 184.91787 * 17 15 12 19 19 Si 1.86793 * 120.00212 * 4.91927 * 17 15 12 20 20 H 1.48500 * 109.47146 * 84.83132 * 19 17 15 21 21 H 1.48497 * 109.47562 * 204.83241 * 19 17 15 22 22 H 1.48500 * 109.47065 * 324.83043 * 19 17 15 23 23 C 1.38238 * 120.00119 * 0.25531 * 6 5 4 24 24 C 1.38232 * 120.00323 * 270.02270 * 3 2 1 25 25 H 1.09000 * 109.47132 * 299.99589 * 1 2 3 26 26 H 1.08994 * 109.47377 * 59.99726 * 1 2 3 27 27 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46975 * 240.00694 * 2 1 3 29 29 H 1.08999 * 109.47629 * 120.00649 * 2 1 3 30 30 H 1.08004 * 119.99569 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99903 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47047 * 329.99839 * 7 6 5 33 33 H 1.09008 * 109.46857 * 210.00239 * 7 6 5 34 34 H 1.08994 * 109.47475 * 60.00335 * 8 7 6 35 35 H 1.08994 * 109.47311 * 299.99510 * 8 7 6 36 36 H 0.97000 * 120.00491 * 359.72494 * 11 9 8 37 37 H 1.08994 * 109.47323 * 295.03611 * 14 12 11 38 38 H 1.09006 * 109.46807 * 55.03623 * 14 12 11 39 39 H 1.09001 * 109.47218 * 175.03487 * 14 12 11 40 40 H 0.96998 * 119.99798 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.99880 * 179.72533 * 23 6 5 42 42 H 1.07996 * 120.00083 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7240 3.3755 1.1973 6 6 2.9543 4.0272 0.0002 7 6 3.4567 5.4481 0.0003 8 6 4.9866 5.4480 0.0002 9 6 5.4890 6.8688 0.0009 10 8 4.7008 7.7907 0.0010 11 7 6.8140 7.1151 -0.0047 12 6 7.3024 8.4963 -0.0101 13 1 6.6320 9.1210 0.5802 14 6 7.3485 9.0154 -1.4487 15 6 8.6860 8.5423 0.5851 16 1 9.3718 7.7240 0.4215 17 6 9.0767 9.6289 1.3385 18 7 10.3138 9.7147 1.7767 19 14 7.8491 10.9793 1.7367 20 1 7.0692 10.5995 2.9420 21 1 8.5756 12.2480 1.9967 22 1 6.9263 11.1639 0.5879 23 6 2.7184 3.3776 -1.1970 24 6 2.2622 2.0726 -1.1971 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0824 1.5633 2.1325 31 1 2.9045 3.8844 2.1326 32 1 3.0933 5.9618 0.8903 33 1 3.0932 5.9620 -0.8897 34 1 5.3499 4.9343 -0.8899 35 1 5.3500 4.9342 0.8900 36 1 7.4444 6.3779 -0.0051 37 1 8.0845 8.4466 -2.0167 38 1 6.3667 8.9002 -1.9081 39 1 7.6270 10.0692 -1.4459 40 1 10.5885 10.4790 2.3070 41 1 2.8941 3.8883 -2.1322 42 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194722794.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -64.811363 kcal Electronic energy + Delta-G solvation = -20197.127410 eV Core-core repulsion = 17139.843209 eV Total energy + Delta-G solvation = -3057.284200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82460 -40.19048 -36.84697 -35.92535 -34.37885 -33.41675 -31.77148 -31.63920 -29.49468 -27.34477 -25.95223 -23.65889 -23.58361 -22.37830 -21.29975 -21.09736 -19.26061 -17.78380 -17.31709 -16.84837 -16.74656 -16.04038 -16.02695 -15.76905 -14.93962 -14.65629 -14.58007 -14.49049 -14.29260 -14.22546 -13.98839 -13.85493 -13.22226 -13.19324 -13.05878 -12.81694 -12.64616 -12.43975 -12.33676 -12.26248 -11.88881 -11.85012 -11.62820 -11.58715 -11.24052 -10.87355 -10.70184 -9.79174 -9.77340 -9.36379 -8.40107 -6.46078 0.44300 0.54743 1.28201 1.32563 1.43320 1.81930 2.25973 2.49457 2.88070 3.04138 3.77775 3.91655 3.96595 4.11787 4.16064 4.20582 4.35615 4.39782 4.48973 4.54712 4.64522 4.67409 4.69242 4.73884 4.77242 4.83380 4.97939 5.09554 5.10589 5.11468 5.13828 5.26641 5.28117 5.37363 5.41132 5.44992 5.57490 5.77067 5.77412 5.79195 6.12247 6.17285 6.59019 6.93511 7.20284 7.50096 8.74944 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.002874 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.630112 B = 9739.832234 C = 9810.410180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.093 4.093 7 C -0.057 4.057 8 C -0.121 4.121 9 C 0.498 3.502 10 O -0.600 6.600 11 N -0.706 5.706 12 C 0.231 3.769 13 H 0.029 0.971 14 C -0.140 4.140 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.031 3.969 18 N -0.930 5.930 19 Si 0.928 3.072 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.257 1.257 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.271 0.729 41 H 0.130 0.870 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -19.604 -4.496 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.093 4.093 7 C -0.095 4.095 8 C -0.161 4.161 9 C 0.286 3.714 10 O -0.482 6.482 11 N -0.355 5.355 12 C 0.127 3.873 13 H 0.046 0.954 14 C -0.199 4.199 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.169 4.169 18 N -0.569 5.569 19 Si 0.753 3.247 20 H -0.200 1.200 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.241 0.759 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.101 -18.833 -4.395 26.488 hybrid contribution 0.322 0.813 0.460 0.988 sum -17.780 -18.019 -3.934 25.618 Atomic orbital electron populations 1.21738 0.94376 1.02339 1.01800 1.20578 0.96401 0.91491 1.03600 1.20192 0.98885 0.97264 0.93040 1.21241 0.99851 0.94638 0.98467 1.21236 0.99802 0.95388 0.97827 1.19868 1.00032 0.95472 0.93894 1.20204 0.93360 0.92665 1.03298 1.21626 0.96605 0.91712 1.06113 1.21432 0.82261 0.92614 0.75137 1.90620 1.56332 1.48354 1.52939 1.46431 1.06707 1.09776 1.72626 1.18879 0.93042 0.81202 0.94143 0.95356 1.22102 0.99539 1.00546 0.97724 1.21205 0.97381 1.05782 1.32038 0.92493 1.25622 0.96453 1.00035 0.94785 1.69981 1.18104 1.31804 1.36984 0.86039 0.79672 0.79405 0.79619 1.20004 1.20205 1.18159 1.21245 0.99661 0.95299 0.97774 1.21253 0.99780 0.94630 0.98418 0.93090 0.92969 0.91150 0.90216 0.90372 0.84753 0.85663 0.91699 0.91203 0.86872 0.87520 0.75884 0.92352 0.94382 0.93515 0.92017 0.85232 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.84 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.79 16 3 C -0.09 -1.56 5.13 -19.87 -0.10 -1.66 16 4 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 5 C -0.12 -2.56 9.70 22.27 0.22 -2.34 16 6 C -0.09 -2.03 5.13 -19.86 -0.10 -2.13 16 7 C -0.06 -1.45 4.63 29.85 0.14 -1.31 16 8 C -0.12 -3.08 5.68 29.85 0.17 -2.91 16 9 C 0.50 18.30 7.79 87.66 0.68 18.98 16 10 O -0.60 -26.92 15.65 -3.05 -0.05 -26.97 16 11 N -0.71 -27.73 5.07 -446.08 -2.26 -29.99 16 12 C 0.23 11.00 2.22 44.25 0.10 11.09 16 13 H 0.03 1.48 4.73 -2.39 -0.01 1.47 16 14 C -0.14 -6.07 9.47 71.98 0.68 -5.39 16 15 C -0.53 -28.52 9.05 25.60 0.23 -28.29 16 16 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 17 C 0.03 1.78 5.47 84.65 0.46 2.24 16 18 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 19 Si 0.93 44.98 26.99 68.60 1.85 46.83 16 20 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -12.24 6.82 99.48 0.68 -11.56 16 23 C -0.12 -2.39 9.70 22.27 0.22 -2.18 16 24 C -0.12 -2.11 9.70 22.27 0.22 -1.90 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.06 1.80 8.04 -2.39 -0.02 1.78 16 33 H 0.07 1.86 8.04 -2.38 -0.02 1.85 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.41 13.85 8.59 -92.71 -0.80 13.05 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -67.26 351.35 4.02 -63.23 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.16 Total: 21.62 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.02 Total: -19.43 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -1.96 Total: -85.28 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.85 Total: 46.83 kcal Total: -67.26 4.02 -63.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194722794.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds