Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46933 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47064 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99901 * 354.83564 * 7 6 5 9 9 N 1.34779 * 119.99924 * 174.84084 * 7 6 5 10 10 C 1.37137 * 120.00011 * 5.67638 * 9 7 6 11 11 H 1.08004 * 120.00273 * 55.66781 * 10 9 7 12 12 C 1.38888 * 120.00163 * 235.66946 * 10 9 7 13 13 N 1.31424 * 119.99674 * 9.24133 * 12 10 9 14 14 Si 1.86798 * 120.00391 * 189.24837 * 12 10 9 15 15 H 1.48493 * 109.47482 * 89.99650 * 14 12 10 16 16 H 1.48501 * 109.46927 * 210.00055 * 14 12 10 17 17 H 1.48497 * 109.46843 * 329.99479 * 14 12 10 18 18 C 1.39785 * 119.99708 * 185.67650 * 9 7 6 19 19 C 1.38961 * 120.07695 * 175.18919 * 18 9 7 20 20 C 1.38081 * 119.92115 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38314 * 120.15389 * 359.97438 * 21 20 19 23 23 C 1.38088 * 120.07763 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.46800 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46868 * 299.99956 * 1 2 3 26 26 H 1.08992 * 109.47130 * 60.00418 * 1 2 3 27 27 H 1.09000 * 109.47496 * 239.99872 * 2 1 3 28 28 H 1.09001 * 109.47637 * 119.99912 * 2 1 3 29 29 H 1.09000 * 109.46970 * 59.99550 * 3 2 1 30 30 H 1.09008 * 109.46576 * 300.00154 * 3 2 1 31 31 H 1.08998 * 109.47314 * 59.99589 * 4 3 2 32 32 H 1.09006 * 109.46643 * 299.99541 * 4 3 2 33 33 H 1.08998 * 109.47435 * 59.99689 * 5 4 3 34 34 H 1.08998 * 109.47251 * 299.99604 * 5 4 3 35 35 H 1.09000 * 109.47496 * 59.99898 * 6 5 4 36 36 H 1.09001 * 109.47637 * 299.99939 * 6 5 4 37 37 H 0.97001 * 120.00283 * 184.98362 * 13 12 10 38 38 H 1.07998 * 120.03859 * 359.70541 * 19 18 9 39 39 H 1.08007 * 119.95632 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.92309 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.95873 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03890 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0013 7 6 6.1123 4.3059 -0.0026 8 8 5.3282 5.2262 -0.0979 9 7 7.4329 4.5538 0.1022 10 6 8.3285 3.5153 0.0926 11 1 8.3345 2.8149 -0.7295 12 6 9.2277 3.3640 1.1403 13 7 9.1052 4.0993 2.2227 14 14 10.6112 2.1157 1.0108 15 1 11.8050 2.7605 0.4074 16 1 10.9522 1.6124 2.3657 17 1 10.1763 0.9816 0.1566 18 6 7.8897 5.8696 0.2205 19 6 9.2403 6.1219 0.4288 20 6 9.6881 7.4229 0.5447 21 6 8.7944 8.4744 0.4532 22 6 7.4496 8.2271 0.2449 23 6 6.9947 6.9285 0.1280 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.7170 3.3992 0.8886 34 1 3.7163 3.3986 -0.8913 35 1 5.9733 2.3708 -0.8910 36 1 5.9734 2.3716 0.8889 37 1 9.7737 4.0460 2.9235 38 1 9.9382 5.3011 0.5043 39 1 10.7376 7.6196 0.7071 40 1 9.1474 9.4909 0.5447 41 1 6.7545 9.0506 0.1735 42 1 5.9444 6.7361 -0.0343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194953564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = -23.194183 kcal Electronic energy + Delta-G solvation = -21088.553009 eV Core-core repulsion = 18033.073465 eV Total energy + Delta-G solvation = -3055.479544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68457 -37.35560 -36.15442 -34.98920 -33.06269 -31.93963 -29.69790 -29.49315 -28.11789 -25.25725 -24.48951 -21.95722 -21.30523 -20.89653 -20.46581 -19.22857 -17.62294 -16.10623 -15.88273 -15.50843 -15.15612 -14.68163 -14.46704 -13.93757 -13.66788 -13.47554 -13.16524 -12.96555 -12.58917 -12.48201 -12.24048 -12.01574 -11.75303 -11.54938 -11.28747 -11.21736 -11.10069 -11.07219 -10.82010 -10.63268 -10.53503 -10.47331 -10.33762 -10.13953 -9.99866 -9.20472 -8.73322 -8.07579 -7.76889 -6.86286 -6.29224 -4.53456 2.45600 2.59322 3.03499 3.11976 3.13915 3.78665 3.97263 4.49691 4.75409 4.89976 4.94186 5.10036 5.16045 5.33862 5.50323 5.55520 5.71060 5.76928 5.80878 5.89451 5.96934 5.99926 6.03194 6.06930 6.16672 6.22517 6.27125 6.31668 6.40086 6.47082 6.73053 6.74155 6.76565 6.83516 6.97346 7.18547 7.25709 7.54142 7.64981 7.72742 7.81805 8.08526 8.46783 8.86338 9.28959 9.66806 10.48554 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.004811 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.239953 B = 5818.980282 C = 7321.360184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.116 4.116 7 C 0.493 3.507 8 O -0.569 6.569 9 N -0.386 5.386 10 C -0.366 4.366 11 H 0.093 0.907 12 C 0.056 3.944 13 N -0.842 5.842 14 Si 0.914 3.086 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.184 3.816 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.194 4.194 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.274 0.726 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -4.810 -2.858 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.142 4.142 6 C -0.155 4.155 7 C 0.286 3.714 8 O -0.454 6.454 9 N -0.094 5.094 10 C -0.493 4.493 11 H 0.110 0.890 12 C -0.154 4.154 13 N -0.474 5.474 14 Si 0.739 3.261 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.195 4.195 22 C -0.140 4.140 23 C -0.214 4.214 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.827 -4.486 -2.669 8.593 hybrid contribution 1.131 -0.530 0.286 1.282 sum -5.695 -5.016 -2.383 7.954 Atomic orbital electron populations 1.21784 0.96267 1.01210 1.01741 1.21552 0.95491 0.97416 1.01867 1.21622 0.95917 0.96162 1.02035 1.21618 0.94806 0.97377 1.01890 1.21361 0.94468 0.95540 1.02793 1.21350 0.95206 0.94792 1.04199 1.21042 0.82058 0.91159 0.77183 1.90156 1.56461 1.45368 1.53378 1.41045 1.04704 1.03763 1.59843 1.19315 1.16256 1.07380 1.06396 0.88981 1.25619 0.99229 0.96919 0.93640 1.70038 1.33386 1.38276 1.05700 0.86134 0.81073 0.80858 0.78051 1.19782 1.20569 1.18910 1.18322 0.92730 0.84727 0.95510 1.21033 0.95237 0.96209 1.00347 1.20763 0.98267 0.92877 1.02376 1.20778 0.94089 0.97604 1.07011 1.20870 0.94958 0.96371 1.01777 1.22817 1.03602 0.91143 1.03806 0.93104 0.92837 0.92855 0.92191 0.92151 0.92091 0.92132 0.92197 0.92077 0.91869 0.91782 0.89946 0.88999 0.91545 0.85138 0.87857 0.88244 0.87791 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 4 C -0.12 -1.55 5.21 -26.73 -0.14 -1.69 16 5 C -0.10 -1.69 4.52 -26.73 -0.12 -1.81 16 6 C -0.12 -2.20 4.53 -27.88 -0.13 -2.32 16 7 C 0.49 11.63 7.57 -10.98 -0.08 11.55 16 8 O -0.57 -14.06 12.37 5.56 0.07 -13.99 16 9 N -0.39 -9.76 2.62 -58.98 -0.15 -9.91 16 10 C -0.37 -8.96 7.61 -14.94 -0.11 -9.08 16 11 H 0.09 2.14 7.85 -52.48 -0.41 1.73 16 12 C 0.06 1.34 3.49 -17.49 -0.06 1.28 16 13 N -0.84 -21.86 11.39 55.49 0.63 -21.22 16 14 Si 0.91 18.51 29.57 -169.99 -5.03 13.48 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 18 C 0.18 4.71 6.05 -83.70 -0.51 4.21 16 19 C -0.11 -2.63 7.87 -39.37 -0.31 -2.94 16 20 C -0.12 -2.67 10.04 -39.61 -0.40 -3.07 16 21 C -0.18 -3.58 10.04 -39.53 -0.40 -3.97 16 22 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 23 C -0.19 -4.71 9.06 -39.37 -0.36 -5.07 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 37 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.13 3.29 5.15 -52.49 -0.27 3.02 16 39 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.18 4.36 4.50 -56.37 -0.25 4.10 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -27.55 340.00 -9.12 -36.67 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.83 Total: 9.63 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.94 Total: -19.78 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.48 Total: -31.14 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.55 -9.12 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194953564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.477 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds