Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46933 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46946 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47064 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99901 * 354.83564 * 7 6 5 9 9 N 1.34779 * 119.99924 * 174.84084 * 7 6 5 10 10 C 1.37137 * 120.00011 * 5.67638 * 9 7 6 11 11 H 1.08004 * 120.00273 * 55.66781 * 10 9 7 12 12 C 1.38888 * 120.00163 * 235.66946 * 10 9 7 13 13 N 1.31424 * 119.99674 * 9.24133 * 12 10 9 14 14 Si 1.86798 * 120.00391 * 189.24837 * 12 10 9 15 15 H 1.48493 * 109.47482 * 89.99650 * 14 12 10 16 16 H 1.48501 * 109.46927 * 210.00055 * 14 12 10 17 17 H 1.48497 * 109.46843 * 329.99479 * 14 12 10 18 18 C 1.39785 * 119.99708 * 185.67650 * 9 7 6 19 19 C 1.38961 * 120.07695 * 175.18919 * 18 9 7 20 20 C 1.38081 * 119.92115 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38314 * 120.15389 * 359.97438 * 21 20 19 23 23 C 1.38088 * 120.07763 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.46800 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46868 * 299.99956 * 1 2 3 26 26 H 1.08992 * 109.47130 * 60.00418 * 1 2 3 27 27 H 1.09000 * 109.47496 * 239.99872 * 2 1 3 28 28 H 1.09001 * 109.47637 * 119.99912 * 2 1 3 29 29 H 1.09000 * 109.46970 * 59.99550 * 3 2 1 30 30 H 1.09008 * 109.46576 * 300.00154 * 3 2 1 31 31 H 1.08998 * 109.47314 * 59.99589 * 4 3 2 32 32 H 1.09006 * 109.46643 * 299.99541 * 4 3 2 33 33 H 1.08998 * 109.47435 * 59.99689 * 5 4 3 34 34 H 1.08998 * 109.47251 * 299.99604 * 5 4 3 35 35 H 1.09000 * 109.47496 * 59.99898 * 6 5 4 36 36 H 1.09001 * 109.47637 * 299.99939 * 6 5 4 37 37 H 0.97001 * 120.00283 * 184.98362 * 13 12 10 38 38 H 1.07998 * 120.03859 * 359.70541 * 19 18 9 39 39 H 1.08007 * 119.95632 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.92309 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.95873 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.03890 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6099 2.8850 -0.0013 7 6 6.1123 4.3059 -0.0026 8 8 5.3282 5.2262 -0.0979 9 7 7.4329 4.5538 0.1022 10 6 8.3285 3.5153 0.0926 11 1 8.3345 2.8149 -0.7295 12 6 9.2277 3.3640 1.1403 13 7 9.1052 4.0993 2.2227 14 14 10.6112 2.1157 1.0108 15 1 11.8050 2.7605 0.4074 16 1 10.9522 1.6124 2.3657 17 1 10.1763 0.9816 0.1566 18 6 7.8897 5.8696 0.2205 19 6 9.2403 6.1219 0.4288 20 6 9.6881 7.4229 0.5447 21 6 8.7944 8.4744 0.4532 22 6 7.4496 8.2271 0.2449 23 6 6.9947 6.9285 0.1280 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 3.7170 3.3992 0.8886 34 1 3.7163 3.3986 -0.8913 35 1 5.9733 2.3708 -0.8910 36 1 5.9734 2.3716 0.8889 37 1 9.7737 4.0460 2.9235 38 1 9.9382 5.3011 0.5043 39 1 10.7376 7.6196 0.7071 40 1 9.1474 9.4909 0.5447 41 1 6.7545 9.0506 0.1735 42 1 5.9444 6.7361 -0.0343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194953564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = -34.902423 kcal Electronic energy + Delta-G solvation = -21089.060716 eV Core-core repulsion = 18033.073465 eV Total energy + Delta-G solvation = -3055.987251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48600 -39.06566 -37.24712 -36.79428 -34.23874 -33.80617 -31.37664 -31.04018 -29.51842 -27.08458 -25.74985 -23.50751 -22.91581 -21.97682 -21.78983 -20.99671 -19.40615 -17.87763 -17.42580 -16.96893 -16.80025 -16.19267 -16.03928 -15.31304 -14.99505 -14.84018 -14.68793 -14.51509 -14.11475 -13.84098 -13.65044 -13.40996 -13.19170 -13.09159 -12.97417 -12.81929 -12.48805 -12.24169 -12.22733 -12.09431 -11.75199 -11.73076 -11.56004 -11.38223 -11.30687 -11.01245 -10.55391 -9.89407 -9.53941 -8.70664 -8.12629 -6.44226 0.69401 0.81015 1.42798 1.45813 1.56687 2.00909 2.26210 2.82581 2.93923 3.36133 3.87183 4.03562 4.05140 4.24306 4.28817 4.31449 4.38157 4.46977 4.58570 4.61740 4.67871 4.83626 4.89218 4.95274 4.96147 5.00939 5.01797 5.11467 5.18075 5.21852 5.28608 5.31074 5.38209 5.43254 5.46062 5.52438 5.57775 5.80061 5.89160 5.90926 6.06554 6.24620 6.63504 7.00473 7.44958 7.82798 8.65628 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.004811 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.239953 B = 5818.980282 C = 7321.360184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.094 4.094 6 C -0.106 4.106 7 C 0.474 3.526 8 O -0.589 6.589 9 N -0.401 5.401 10 C -0.379 4.379 11 H 0.100 0.900 12 C 0.021 3.979 13 N -0.879 5.879 14 Si 0.980 3.020 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.252 1.252 18 C 0.150 3.850 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.167 4.167 22 C -0.120 4.120 23 C -0.220 4.220 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.274 0.726 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -5.150 -3.261 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.149 4.149 5 C -0.132 4.132 6 C -0.145 4.145 7 C 0.268 3.732 8 O -0.475 6.475 9 N -0.108 5.108 10 C -0.505 4.505 11 H 0.117 0.883 12 C -0.185 4.185 13 N -0.512 5.512 14 Si 0.802 3.198 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.175 1.175 18 C 0.054 3.946 19 C -0.150 4.150 20 C -0.143 4.143 21 C -0.186 4.186 22 C -0.139 4.139 23 C -0.240 4.240 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.359 -4.829 -3.088 8.561 hybrid contribution 0.979 -0.298 0.404 1.100 sum -5.379 -5.127 -2.684 7.901 Atomic orbital electron populations 1.21780 0.95388 1.01989 1.01809 1.21531 0.96276 0.96077 1.02234 1.21597 0.94629 0.97461 1.01855 1.21559 0.95937 0.94846 1.02556 1.21292 0.92503 0.97754 1.01672 1.21355 0.96849 0.91885 1.04422 1.21873 0.81742 0.92873 0.76699 1.90134 1.56769 1.46405 1.54216 1.41334 1.05385 1.04064 1.60060 1.19628 1.16591 1.07481 1.06846 0.88278 1.26374 1.01026 0.98250 0.92831 1.70157 1.34317 1.40151 1.06571 0.85126 0.77955 0.78766 0.77920 1.19520 1.20771 1.17496 1.18719 0.93676 0.85350 0.96882 1.21073 0.94666 0.97282 1.01950 1.21156 1.00130 0.92038 1.01007 1.21216 0.93283 0.99311 1.04750 1.21250 0.96345 0.95953 1.00304 1.22851 1.03047 0.92511 1.05554 0.91985 0.92934 0.92678 0.91616 0.92001 0.92595 0.92079 0.91043 0.91839 0.93527 0.92362 0.88432 0.89666 0.91653 0.86558 0.84951 0.84001 0.84698 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.25 5.93 30.59 0.18 -2.06 16 3 C -0.12 -2.58 5.21 30.60 0.16 -2.42 16 4 C -0.11 -2.80 5.21 30.59 0.16 -2.64 16 5 C -0.09 -3.10 4.52 30.59 0.14 -2.96 16 6 C -0.11 -4.08 4.53 29.85 0.14 -3.94 16 7 C 0.47 23.19 7.57 87.66 0.66 23.86 16 8 O -0.59 -30.36 12.37 -3.03 -0.04 -30.39 16 9 N -0.40 -20.88 2.62 -458.89 -1.20 -22.09 16 10 C -0.38 -18.85 7.61 84.02 0.64 -18.21 16 11 H 0.10 4.63 7.85 -2.91 -0.02 4.61 16 12 C 0.02 1.04 3.49 84.91 0.30 1.33 16 13 N -0.88 -46.51 11.39 21.65 0.25 -46.26 16 14 Si 0.98 37.79 29.57 68.60 2.03 39.82 16 15 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 18 C 0.15 7.90 6.05 38.22 0.23 8.13 16 19 C -0.13 -6.35 7.87 22.41 0.18 -6.18 16 20 C -0.12 -5.18 10.04 22.25 0.22 -4.95 16 21 C -0.17 -6.34 10.04 22.30 0.22 -6.11 16 22 C -0.12 -4.95 10.04 22.25 0.22 -4.73 16 23 C -0.22 -10.88 9.06 22.41 0.20 -10.68 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 35 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.08 3.39 8.04 -2.39 -0.02 3.37 16 37 H 0.27 13.70 8.32 -92.71 -0.77 12.93 16 38 H 0.12 5.97 5.15 -2.91 -0.02 5.96 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 41 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.16 8.34 4.50 -64.42 -0.29 8.05 16 Total: -1.00 -60.70 340.00 6.10 -54.60 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.70 Total: 37.61 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 4.37 Total: -33.29 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.96 Total: -68.35 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.39 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -60.70 6.10 -54.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194953564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.697 kcal (2) G-P(sol) polarization free energy of solvation -60.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds