Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52991 * 109.46983 * 179.97438 * 3 2 1 5 5 C 1.50709 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99632 * 269.72580 * 5 4 3 7 7 C 1.38236 * 119.99670 * 179.75783 * 6 5 4 8 8 C 1.38232 * 119.99828 * 0.51918 * 7 6 5 9 9 C 1.50700 * 120.00218 * 179.71833 * 8 7 6 10 10 C 1.50703 * 109.47145 * 270.02192 * 9 8 7 11 11 O 1.21285 * 120.00065 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00149 * 359.97438 * 12 10 9 14 14 C 1.37101 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.07999 * 120.00043 * 22.39995 * 14 12 10 16 16 C 1.38951 * 119.99665 * 202.40511 * 14 12 10 17 17 N 1.31410 * 120.00294 * 11.60377 * 16 14 12 18 18 Si 1.86808 * 119.99560 * 191.60757 * 16 14 12 19 19 H 1.48501 * 109.47118 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47093 * 120.00021 * 18 16 14 21 21 H 1.48505 * 109.46822 * 239.99942 * 18 16 14 22 22 C 1.38236 * 120.00416 * 359.74073 * 8 7 6 23 23 C 1.38232 * 120.00011 * 90.00283 * 5 4 3 24 24 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47166 * 300.00073 * 1 2 3 26 26 H 1.09000 * 109.46884 * 59.99805 * 1 2 3 27 27 H 1.08997 * 109.47166 * 239.99927 * 2 1 3 28 28 H 1.09008 * 109.46739 * 119.99949 * 2 1 3 29 29 H 1.09004 * 109.46950 * 60.00202 * 3 2 1 30 30 H 1.08997 * 109.46856 * 299.99931 * 3 2 1 31 31 H 1.09002 * 109.47353 * 60.00001 * 4 3 2 32 32 H 1.08997 * 109.47591 * 299.99877 * 4 3 2 33 33 H 1.08001 * 120.00348 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00265 * 180.23150 * 7 6 5 35 35 H 1.08998 * 109.46949 * 30.01927 * 9 8 7 36 36 H 1.08999 * 109.47655 * 150.01998 * 9 8 7 37 37 H 1.08996 * 109.46931 * 92.16013 * 13 12 10 38 38 H 1.09006 * 109.46896 * 212.15420 * 13 12 10 39 39 H 1.08999 * 109.47042 * 332.15363 * 13 12 10 40 40 H 0.96998 * 119.99925 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.00531 * 179.97438 * 22 8 7 42 42 H 1.08004 * 120.00171 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.3087 3.5133 -1.1956 7 6 4.7647 4.8183 -1.1950 8 6 4.9947 5.4695 0.0024 9 6 5.4979 6.8900 0.0031 10 6 7.0050 6.8891 0.0036 11 8 7.6107 5.8384 0.0039 12 7 7.6796 8.0559 0.0037 13 6 6.9478 9.3251 0.0028 14 6 9.0506 8.0551 0.0037 15 1 9.5900 7.1900 -0.3529 16 6 9.7460 9.1671 0.4625 17 7 9.1097 10.1216 1.1036 18 14 11.5855 9.3053 0.1678 19 1 12.0598 8.1076 -0.5711 20 1 11.8686 10.5246 -0.6311 21 1 12.2904 9.3932 1.4719 22 6 4.7635 4.8177 1.1993 23 6 4.3024 3.5146 1.1987 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 4.1329 3.0031 -2.1311 34 1 4.9458 5.3275 -2.1301 35 1 5.1353 7.4044 -0.8869 36 1 5.1346 7.4039 0.8930 37 1 6.7992 9.6595 1.0295 38 1 7.5206 10.0743 -0.5440 39 1 5.9795 9.1859 -0.4779 40 1 9.5953 10.8976 1.4242 41 1 4.9436 5.3264 2.1348 42 1 4.1216 3.0053 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263854992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = -31.041392 kcal Electronic energy + Delta-G solvation = -20433.526918 eV Core-core repulsion = 17377.707094 eV Total energy + Delta-G solvation = -3055.819824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.42652 -38.13241 -35.92463 -34.61412 -32.89746 -31.58533 -30.56699 -29.89990 -27.04506 -25.99347 -24.37781 -23.24829 -22.38264 -21.30394 -20.46619 -18.79799 -16.82957 -15.99333 -15.86512 -15.72409 -15.02344 -14.79528 -14.52825 -14.18651 -13.96511 -13.88515 -13.16258 -13.11160 -12.94647 -12.61988 -12.37930 -12.05861 -11.79900 -11.52551 -11.42098 -11.35063 -11.18296 -11.13932 -11.06603 -10.87673 -10.74959 -10.52094 -10.48836 -10.29819 -10.17303 -9.00465 -8.53317 -8.47050 -8.02171 -7.63987 -6.27813 -3.84106 1.70525 1.79321 3.16811 3.26861 3.34201 3.94595 4.03866 4.21186 4.64747 4.75006 4.92248 5.01269 5.05144 5.14510 5.15529 5.30348 5.32554 5.36145 5.55476 5.57049 5.59980 5.65333 5.80765 5.83921 5.86144 5.94820 5.96652 6.03272 6.07464 6.13583 6.20242 6.32772 6.45119 6.48239 6.77461 6.90227 6.90484 7.07240 7.25026 7.38252 7.59950 8.17528 8.53163 9.23541 9.47087 10.03832 10.76001 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047425 B = 0.002972 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.268002 B = 9418.245032 C = 9628.623442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.077 4.077 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.045 4.045 9 C -0.098 4.098 10 C 0.450 3.550 11 O -0.582 6.582 12 N -0.451 5.451 13 C 0.112 3.888 14 C -0.302 4.302 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.885 5.885 18 Si 0.925 3.075 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.104 4.104 23 C -0.118 4.118 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 -11.095 -2.093 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.114 4.114 5 C -0.096 4.096 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.045 4.045 9 C -0.138 4.138 10 C 0.238 3.762 11 O -0.466 6.466 12 N -0.171 5.171 13 C -0.031 4.031 14 C -0.430 4.430 15 H 0.116 0.884 16 C -0.175 4.175 17 N -0.525 5.525 18 Si 0.752 3.248 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.122 4.122 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.748 -11.404 -2.013 18.751 hybrid contribution 0.975 0.487 0.003 1.090 sum -13.773 -10.917 -2.010 17.690 Atomic orbital electron populations 1.21778 0.96032 1.01370 1.01839 1.21563 0.95730 0.97099 1.01940 1.21606 0.94727 0.96370 1.02398 1.20558 0.95255 0.93086 1.02511 1.19719 1.00744 0.95856 0.93316 1.20866 1.00820 0.94785 0.97131 1.20933 0.99122 0.94808 0.97514 1.19449 0.96391 0.95464 0.93218 1.20663 0.95811 0.93862 1.03475 1.19915 0.87977 0.84508 0.83796 1.90536 1.69871 1.31022 1.55151 1.43618 1.06241 1.04001 1.63215 1.21505 0.92873 0.87087 1.01679 1.19698 0.80438 1.02817 1.40074 0.88432 1.25336 1.00283 0.96313 0.95536 1.70005 1.36461 1.10062 1.36018 0.85872 0.82488 0.78279 0.78124 1.19273 1.20707 1.20782 1.20959 0.98842 0.94806 0.97627 1.20877 1.00728 0.94808 0.97147 0.92964 0.92771 0.92787 0.92096 0.92085 0.91890 0.91899 0.91365 0.91354 0.86715 0.86532 0.89658 0.89459 0.92441 0.91331 0.95534 0.92401 0.86435 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 4 C -0.08 -0.82 5.35 -27.88 -0.15 -0.97 16 5 C -0.10 -1.34 5.13 -104.62 -0.54 -1.88 16 6 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 7 C -0.11 -1.76 9.70 -39.58 -0.38 -2.14 16 8 C -0.04 -0.81 4.37 -104.62 -0.46 -1.27 16 9 C -0.10 -1.84 4.35 -29.03 -0.13 -1.97 16 10 C 0.45 11.17 7.62 -10.98 -0.08 11.09 16 11 O -0.58 -16.58 15.73 5.55 0.09 -16.50 16 12 N -0.45 -11.77 3.02 -122.19 -0.37 -12.14 16 13 C 0.11 2.52 8.52 59.85 0.51 3.03 16 14 C -0.30 -8.60 9.29 -14.93 -0.14 -8.74 16 15 H 0.10 2.92 7.41 -52.49 -0.39 2.53 16 16 C 0.03 0.75 5.11 -17.47 -0.09 0.66 16 17 N -0.89 -23.89 10.62 55.50 0.59 -23.30 16 18 Si 0.93 21.12 29.57 -169.99 -5.03 16.09 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.10 -1.77 9.70 -39.58 -0.38 -2.15 16 23 C -0.12 -1.74 9.70 -39.58 -0.38 -2.13 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.09 1.41 7.35 -51.93 -0.38 1.03 16 36 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 37 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 38 H 0.07 1.62 7.06 -51.93 -0.37 1.25 16 39 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 347.32 15.07 5.23 5.23 Total: -1.00 -31.83 347.32 -8.92 -40.75 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.90 Total: 1.45 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.54 Total: -11.60 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.22 Total: -35.43 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.83 -8.92 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263854992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.713 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds