Wall clock time and date at job start Mon Mar 30 2020 02:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.52991 * 109.46983 * 179.97438 * 3 2 1 5 5 C 1.50709 * 109.47118 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99632 * 269.72580 * 5 4 3 7 7 C 1.38236 * 119.99670 * 179.75783 * 6 5 4 8 8 C 1.38232 * 119.99828 * 0.51918 * 7 6 5 9 9 C 1.50700 * 120.00218 * 179.71833 * 8 7 6 10 10 C 1.50703 * 109.47145 * 270.02192 * 9 8 7 11 11 O 1.21285 * 120.00065 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00149 * 359.97438 * 12 10 9 14 14 C 1.37101 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.07999 * 120.00043 * 22.39995 * 14 12 10 16 16 C 1.38951 * 119.99665 * 202.40511 * 14 12 10 17 17 N 1.31410 * 120.00294 * 11.60377 * 16 14 12 18 18 Si 1.86808 * 119.99560 * 191.60757 * 16 14 12 19 19 H 1.48501 * 109.47118 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47093 * 120.00021 * 18 16 14 21 21 H 1.48505 * 109.46822 * 239.99942 * 18 16 14 22 22 C 1.38236 * 120.00416 * 359.74073 * 8 7 6 23 23 C 1.38232 * 120.00011 * 90.00283 * 5 4 3 24 24 H 1.09004 * 109.47057 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47166 * 300.00073 * 1 2 3 26 26 H 1.09000 * 109.46884 * 59.99805 * 1 2 3 27 27 H 1.08997 * 109.47166 * 239.99927 * 2 1 3 28 28 H 1.09008 * 109.46739 * 119.99949 * 2 1 3 29 29 H 1.09004 * 109.46950 * 60.00202 * 3 2 1 30 30 H 1.08997 * 109.46856 * 299.99931 * 3 2 1 31 31 H 1.09002 * 109.47353 * 60.00001 * 4 3 2 32 32 H 1.08997 * 109.47591 * 299.99877 * 4 3 2 33 33 H 1.08001 * 120.00348 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.00265 * 180.23150 * 7 6 5 35 35 H 1.08998 * 109.46949 * 30.01927 * 9 8 7 36 36 H 1.08999 * 109.47655 * 150.01998 * 9 8 7 37 37 H 1.08996 * 109.46931 * 92.16013 * 13 12 10 38 38 H 1.09006 * 109.46896 * 212.15420 * 13 12 10 39 39 H 1.08999 * 109.47042 * 332.15363 * 13 12 10 40 40 H 0.96998 * 119.99925 * 179.97438 * 17 16 14 41 41 H 1.07996 * 120.00531 * 179.97438 * 22 8 7 42 42 H 1.08004 * 120.00171 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.3087 3.5133 -1.1956 7 6 4.7647 4.8183 -1.1950 8 6 4.9947 5.4695 0.0024 9 6 5.4979 6.8900 0.0031 10 6 7.0050 6.8891 0.0036 11 8 7.6107 5.8384 0.0039 12 7 7.6796 8.0559 0.0037 13 6 6.9478 9.3251 0.0028 14 6 9.0506 8.0551 0.0037 15 1 9.5900 7.1900 -0.3529 16 6 9.7460 9.1671 0.4625 17 7 9.1097 10.1216 1.1036 18 14 11.5855 9.3053 0.1678 19 1 12.0598 8.1076 -0.5711 20 1 11.8686 10.5246 -0.6311 21 1 12.2904 9.3932 1.4719 22 6 4.7635 4.8177 1.1993 23 6 4.3024 3.5146 1.1987 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 4.1329 3.0031 -2.1311 34 1 4.9458 5.3275 -2.1301 35 1 5.1353 7.4044 -0.8869 36 1 5.1346 7.4039 0.8930 37 1 6.7992 9.6595 1.0295 38 1 7.5206 10.0743 -0.5440 39 1 5.9795 9.1859 -0.4779 40 1 9.5953 10.8976 1.4242 41 1 4.9436 5.3264 2.1348 42 1 4.1216 3.0053 2.1338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263854992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:52 Heat of formation + Delta-G solvation = -47.116800 kcal Electronic energy + Delta-G solvation = -20434.224000 eV Core-core repulsion = 17377.707094 eV Total energy + Delta-G solvation = -3056.516906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84868 -39.78813 -36.90546 -36.46752 -34.11557 -33.52330 -31.75852 -31.02905 -28.53366 -27.62320 -26.11359 -24.35375 -23.57911 -22.07901 -21.61218 -20.54322 -18.88391 -17.87292 -16.97730 -16.88325 -16.48700 -16.13345 -16.05824 -15.65887 -15.49810 -14.88296 -14.37170 -14.25547 -14.01431 -13.95951 -13.67779 -13.50049 -13.29573 -13.09018 -12.89209 -12.80599 -12.66326 -12.38128 -12.21546 -12.11848 -12.09126 -11.93049 -11.73146 -11.43738 -11.34845 -11.02857 -10.39193 -9.74228 -9.68289 -9.31712 -8.32781 -5.98372 0.48337 0.58278 1.34739 1.39325 1.53445 2.04354 2.27363 2.81092 3.09010 3.25668 3.79413 3.92339 3.95158 4.13105 4.17499 4.23463 4.26028 4.36947 4.40643 4.54183 4.60040 4.69946 4.71170 4.81731 4.83946 4.87568 5.01132 5.01806 5.05433 5.17932 5.25262 5.26029 5.34917 5.39722 5.42710 5.44187 5.54167 5.56924 5.77738 5.79871 6.09021 6.21154 6.49546 7.17791 7.48361 8.05337 8.68859 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047425 B = 0.002972 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.268002 B = 9418.245032 C = 9628.623442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.074 4.074 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.120 4.120 8 C -0.074 4.074 9 C -0.084 4.084 10 C 0.442 3.558 11 O -0.628 6.628 12 N -0.468 5.468 13 C 0.121 3.879 14 C -0.342 4.342 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.898 5.898 18 Si 0.989 3.011 19 H -0.276 1.276 20 H -0.264 1.264 21 H -0.275 1.275 22 C -0.123 4.123 23 C -0.124 4.124 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -11.721 -2.374 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.092 4.092 6 C -0.141 4.141 7 C -0.138 4.138 8 C -0.075 4.075 9 C -0.123 4.123 10 C 0.232 3.768 11 O -0.515 6.515 12 N -0.187 5.187 13 C -0.022 4.022 14 C -0.470 4.470 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.537 5.537 18 Si 0.813 3.187 19 H -0.200 1.200 20 H -0.189 1.189 21 H -0.201 1.201 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.850 -11.997 -2.289 20.010 hybrid contribution 1.269 0.621 0.110 1.417 sum -14.581 -11.377 -2.179 18.622 Atomic orbital electron populations 1.21781 0.95542 1.01941 1.01812 1.21541 0.96150 0.96027 1.02380 1.21549 0.93512 0.97391 1.02112 1.20613 0.96197 0.90932 1.03388 1.20134 0.99134 0.97265 0.92703 1.21201 1.00053 0.94205 0.98618 1.21147 0.99520 0.95851 0.97331 1.19518 0.98288 0.95413 0.94253 1.20567 0.90953 0.95482 1.05338 1.20937 0.90482 0.83423 0.81999 1.90487 1.71582 1.32582 1.56843 1.43905 1.05926 1.05572 1.63344 1.21467 0.94201 0.85273 1.01225 1.19614 0.82109 1.02872 1.42377 0.91409 1.26086 1.04428 0.95467 0.94646 1.70074 1.38000 1.10175 1.35436 0.84943 0.77179 0.78380 0.78219 1.20034 1.18873 1.20081 1.21137 0.99651 0.95949 0.97385 1.21180 1.00143 0.94179 0.98662 0.92128 0.92859 0.92798 0.91619 0.91709 0.92277 0.92139 0.90420 0.90586 0.84268 0.85995 0.87139 0.87878 0.93528 0.92934 0.91116 0.91738 0.86569 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.62 5.93 30.60 0.18 -1.44 16 3 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 4 C -0.07 -1.40 5.35 29.85 0.16 -1.24 16 5 C -0.09 -2.41 5.13 -19.86 -0.10 -2.52 16 6 C -0.12 -3.42 9.70 22.27 0.22 -3.20 16 7 C -0.12 -3.93 9.70 22.27 0.22 -3.71 16 8 C -0.07 -2.66 4.37 -19.87 -0.09 -2.75 16 9 C -0.08 -3.10 4.35 29.10 0.13 -2.98 16 10 C 0.44 22.33 7.62 87.66 0.67 23.00 16 11 O -0.63 -37.06 15.73 -3.04 -0.05 -37.11 16 12 N -0.47 -24.87 3.02 -658.89 -1.99 -26.85 16 13 C 0.12 5.41 8.52 127.77 1.09 6.49 16 14 C -0.34 -20.02 9.29 84.04 0.78 -19.24 16 15 H 0.07 4.28 7.41 -2.91 -0.02 4.26 16 16 C 0.00 -0.27 5.11 84.93 0.43 0.17 16 17 N -0.90 -48.35 10.62 21.66 0.23 -48.12 16 18 Si 0.99 43.49 29.57 68.60 2.03 45.51 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 C -0.12 -4.15 9.70 22.27 0.22 -3.94 16 23 C -0.12 -3.54 9.70 22.27 0.22 -3.32 16 24 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 33 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.11 3.47 7.35 -2.39 -0.02 3.45 16 36 H 0.10 3.45 8.05 -2.39 -0.02 3.43 16 37 H 0.05 2.15 7.54 -2.39 -0.02 2.13 16 38 H 0.05 2.47 7.06 -2.38 -0.02 2.46 16 39 H 0.07 2.47 6.36 -2.39 -0.02 2.45 16 40 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -70.13 347.32 6.18 -63.95 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.97 Total: 20.02 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.99 Total: -17.41 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.76 Total: -74.97 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.05 Total: -37.11 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.13 6.18 -63.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263854992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.833 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds