Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47450 * 2 1 4 4 C 1.53003 * 109.46959 * 239.99949 * 2 1 3 5 5 C 1.53007 * 109.47202 * 120.00347 * 2 1 3 6 6 N 1.46502 * 109.47225 * 64.46656 * 5 2 1 7 7 C 1.46499 * 119.99935 * 269.10390 * 6 5 2 8 8 C 1.50696 * 109.47361 * 278.84457 * 7 6 5 9 9 H 1.08001 * 119.99604 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99836 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47275 * 59.99673 * 12 10 8 14 14 H 1.48500 * 109.46922 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.47303 * 299.99549 * 12 10 8 16 16 C 1.34778 * 119.99726 * 89.10432 * 6 5 2 17 17 O 1.21552 * 120.00104 * 6.17277 * 16 6 5 18 18 C 1.47842 * 119.99733 * 186.17216 * 16 6 5 19 19 C 1.39578 * 120.14625 * 150.65771 * 18 16 6 20 20 C 1.37957 * 119.85499 * 179.97438 * 19 18 16 21 21 C 1.38354 * 120.14364 * 0.02562 * 20 19 18 22 22 C 1.38356 * 120.29459 * 0.02562 * 21 20 19 23 23 C 1.37959 * 120.14611 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46679 * 299.99501 * 1 2 3 25 25 H 1.08996 * 109.47002 * 60.00219 * 1 2 3 26 26 H 1.08999 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47642 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47017 * 300.00364 * 3 2 1 29 29 H 1.09002 * 109.46928 * 59.99787 * 3 2 1 30 30 H 1.08997 * 109.47450 * 305.18692 * 4 2 1 31 31 H 1.08998 * 109.47288 * 65.18694 * 4 2 1 32 32 H 1.08999 * 109.46838 * 185.18720 * 4 2 1 33 33 H 1.08998 * 109.46660 * 304.46748 * 5 2 1 34 34 H 1.08998 * 109.47184 * 184.46676 * 5 2 1 35 35 H 1.08999 * 109.47289 * 38.84646 * 7 6 5 36 36 H 1.08998 * 109.46758 * 158.84057 * 7 6 5 37 37 H 0.96999 * 120.00263 * 180.02562 * 11 10 8 38 38 H 1.08007 * 120.06967 * 359.70160 * 19 18 16 39 39 H 1.08004 * 119.92633 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.85222 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.92704 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.07495 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2493 6 7 1.6415 -2.1301 1.1966 7 6 0.3720 -2.5550 1.7916 8 6 0.5460 -2.7242 3.2789 9 1 1.5063 -2.5347 3.7352 10 6 -0.5205 -3.1220 4.0569 11 7 -1.6898 -3.3532 3.5011 12 14 -0.3050 -3.3311 5.9006 13 1 0.1139 -2.0385 6.4998 14 1 -1.5919 -3.7618 6.5037 15 1 0.7342 -4.3587 6.1642 16 6 2.4429 -3.0353 0.6008 17 8 3.5447 -2.7057 0.2071 18 6 1.9819 -4.4291 0.4262 19 6 2.4446 -5.1911 -0.6478 20 6 2.0109 -6.4913 -0.8047 21 6 1.1188 -7.0400 0.0994 22 6 0.6554 -6.2898 1.1655 23 6 1.0812 -4.9884 1.3340 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6028 -1.7186 -1.2970 31 1 1.7545 -0.1567 -2.1368 32 1 3.1260 -0.8024 -1.2040 33 1 1.6128 -0.2558 2.1374 34 1 3.1271 -0.6526 1.2902 35 1 -0.3903 -1.8002 1.5985 36 1 0.0639 -3.5034 1.3515 37 1 -2.4402 -3.6327 4.0485 38 1 3.1373 -4.7624 -1.3569 39 1 2.3679 -7.0819 -1.6355 40 1 0.7820 -8.0583 -0.0282 41 1 -0.0406 -6.7242 1.8679 42 1 0.7184 -4.4037 2.1664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264177224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = -0.457048 kcal Electronic energy + Delta-G solvation = -22429.965797 eV Core-core repulsion = 19375.472209 eV Total energy + Delta-G solvation = -3054.493588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96516 -37.99946 -36.44104 -34.68468 -32.46985 -30.62556 -30.36626 -27.78723 -26.93010 -26.72784 -25.84827 -23.34462 -22.13754 -21.89143 -19.32519 -18.16863 -16.80053 -16.43000 -16.06592 -15.43020 -14.90200 -14.61726 -14.18806 -14.06025 -13.59250 -13.49344 -13.12646 -12.97935 -12.67158 -12.37557 -12.09540 -12.00315 -11.80803 -11.51606 -11.21219 -11.18435 -11.04275 -10.92502 -10.80954 -10.61280 -10.41160 -10.24823 -10.16307 -9.77903 -9.65603 -8.99557 -8.72125 -8.42674 -8.10949 -7.64336 -6.29706 -4.38997 1.52968 1.95376 3.18844 3.24073 3.27233 3.56029 3.94346 4.24211 4.47118 5.00511 5.19916 5.22872 5.30897 5.34658 5.45582 5.48800 5.65390 5.90647 5.91291 5.95470 6.00597 6.14299 6.14772 6.22029 6.22684 6.34443 6.40154 6.44132 6.52262 6.59540 6.63252 6.67016 6.81073 6.87540 6.89403 7.07575 7.14992 7.21355 7.50236 7.58458 7.66344 7.93597 8.35808 8.70821 9.03207 9.29216 10.74235 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.009461 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.140264 B = 2958.833490 C = 4821.339799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.130 3.870 6 N -0.584 5.584 7 C 0.200 3.800 8 C -0.544 4.544 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.881 5.881 12 Si 0.895 3.105 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.558 3.442 17 O -0.569 6.569 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.150 4.150 21 C -0.106 4.106 22 C -0.136 4.136 23 C -0.096 4.096 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.269 0.731 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.444 0.312 -6.322 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.190 4.190 5 C 0.007 3.993 6 N -0.312 5.312 7 C 0.081 3.919 8 C -0.582 4.582 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.518 5.518 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.347 3.653 17 O -0.452 6.452 18 C -0.138 4.138 19 C -0.091 4.091 20 C -0.168 4.168 21 C -0.125 4.125 22 C -0.154 4.154 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.781 0.455 -6.463 7.051 hybrid contribution -0.159 -0.223 1.054 1.089 sum 2.622 0.232 -5.409 6.016 Atomic orbital electron populations 1.21979 0.94420 1.02721 1.00753 1.20953 0.96142 0.95071 0.96378 1.21780 1.00764 0.95406 1.01362 1.21835 1.01618 0.99705 0.95810 1.21366 0.99955 0.81272 0.96730 1.47979 1.22328 1.06628 1.54261 1.20499 0.80239 0.98306 0.92900 1.21445 0.97192 1.47359 0.92230 0.91789 1.24973 0.94839 0.94676 0.99073 1.69917 1.01013 1.44536 1.36361 0.86579 0.77609 0.78976 0.84601 1.19985 1.21005 1.19856 1.18248 0.84319 0.85089 0.77612 1.90645 1.20861 1.80854 1.52795 1.20022 1.00864 0.94782 0.98154 1.21117 0.97722 0.93641 0.96660 1.20907 1.00103 0.95491 1.00280 1.21281 0.96932 0.99349 0.94901 1.21221 1.01150 0.94723 0.98344 1.23530 0.91683 0.95374 1.00683 0.92643 0.93741 0.91488 0.92822 0.92954 0.92710 0.93103 0.93953 0.91956 0.90278 0.91005 0.93972 0.91448 0.92153 0.86010 0.86469 0.86699 0.85990 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.51 37.16 0.28 -2.02 16 2 C -0.08 -1.36 0.85 -154.50 -0.13 -1.49 16 3 C -0.14 -1.81 8.47 37.16 0.31 -1.50 16 4 C -0.13 -2.20 7.12 37.16 0.26 -1.94 16 5 C 0.13 2.44 4.59 -4.04 -0.02 2.42 16 6 N -0.58 -12.26 2.01 -176.18 -0.35 -12.62 16 7 C 0.20 4.56 3.95 -5.20 -0.02 4.54 16 8 C -0.54 -13.43 7.54 -34.44 -0.26 -13.69 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.07 1.72 5.33 -17.82 -0.10 1.63 16 11 N -0.88 -22.66 13.29 55.43 0.74 -21.93 16 12 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 C 0.56 12.10 5.68 -12.33 -0.07 12.03 16 17 O -0.57 -13.04 14.64 5.32 0.08 -12.97 16 18 C -0.14 -2.77 5.60 -104.97 -0.59 -3.36 16 19 C -0.07 -1.30 9.60 -39.18 -0.38 -1.67 16 20 C -0.15 -2.31 10.03 -39.64 -0.40 -2.71 16 21 C -0.11 -1.65 10.04 -39.50 -0.40 -2.04 16 22 C -0.14 -2.45 10.03 -39.64 -0.40 -2.85 16 23 C -0.10 -1.98 7.50 -39.18 -0.29 -2.28 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.23 5.80 -51.93 -0.30 0.93 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.93 6.63 -51.93 -0.34 0.59 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.10 7.24 -51.93 -0.38 0.72 16 33 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 34 H 0.07 1.38 7.37 -51.93 -0.38 0.99 16 35 H 0.04 1.00 5.74 -51.93 -0.30 0.70 16 36 H 0.07 1.60 3.98 -52.32 -0.21 1.39 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.12 2.07 7.92 -52.48 -0.42 1.65 16 39 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 41 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 42 H 0.20 4.66 3.03 -52.49 -0.16 4.50 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -26.53 329.55 -8.03 -34.56 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.25 Total: 8.25 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.18 Total: -14.94 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.38 Total: -34.54 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.53 -8.03 -34.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264177224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.107 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds