Wall clock time and date at job start Mon Mar 30 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47450 * 2 1 4 4 C 1.53003 * 109.46959 * 239.99949 * 2 1 3 5 5 C 1.53007 * 109.47202 * 120.00347 * 2 1 3 6 6 N 1.46502 * 109.47225 * 64.46656 * 5 2 1 7 7 C 1.46499 * 119.99935 * 269.10390 * 6 5 2 8 8 C 1.50696 * 109.47361 * 278.84457 * 7 6 5 9 9 H 1.08001 * 119.99604 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00124 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00084 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99836 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47275 * 59.99673 * 12 10 8 14 14 H 1.48500 * 109.46922 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.47303 * 299.99549 * 12 10 8 16 16 C 1.34778 * 119.99726 * 89.10432 * 6 5 2 17 17 O 1.21552 * 120.00104 * 6.17277 * 16 6 5 18 18 C 1.47842 * 119.99733 * 186.17216 * 16 6 5 19 19 C 1.39578 * 120.14625 * 150.65771 * 18 16 6 20 20 C 1.37957 * 119.85499 * 179.97438 * 19 18 16 21 21 C 1.38354 * 120.14364 * 0.02562 * 20 19 18 22 22 C 1.38356 * 120.29459 * 0.02562 * 21 20 19 23 23 C 1.37959 * 120.14611 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46679 * 299.99501 * 1 2 3 25 25 H 1.08996 * 109.47002 * 60.00219 * 1 2 3 26 26 H 1.08999 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47642 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47017 * 300.00364 * 3 2 1 29 29 H 1.09002 * 109.46928 * 59.99787 * 3 2 1 30 30 H 1.08997 * 109.47450 * 305.18692 * 4 2 1 31 31 H 1.08998 * 109.47288 * 65.18694 * 4 2 1 32 32 H 1.08999 * 109.46838 * 185.18720 * 4 2 1 33 33 H 1.08998 * 109.46660 * 304.46748 * 5 2 1 34 34 H 1.08998 * 109.47184 * 184.46676 * 5 2 1 35 35 H 1.08999 * 109.47289 * 38.84646 * 7 6 5 36 36 H 1.08998 * 109.46758 * 158.84057 * 7 6 5 37 37 H 0.96999 * 120.00263 * 180.02562 * 11 10 8 38 38 H 1.08007 * 120.06967 * 359.70160 * 19 18 16 39 39 H 1.08004 * 119.92633 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.85222 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.92704 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.07495 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2493 6 7 1.6415 -2.1301 1.1966 7 6 0.3720 -2.5550 1.7916 8 6 0.5460 -2.7242 3.2789 9 1 1.5063 -2.5347 3.7352 10 6 -0.5205 -3.1220 4.0569 11 7 -1.6898 -3.3532 3.5011 12 14 -0.3050 -3.3311 5.9006 13 1 0.1139 -2.0385 6.4998 14 1 -1.5919 -3.7618 6.5037 15 1 0.7342 -4.3587 6.1642 16 6 2.4429 -3.0353 0.6008 17 8 3.5447 -2.7057 0.2071 18 6 1.9819 -4.4291 0.4262 19 6 2.4446 -5.1911 -0.6478 20 6 2.0109 -6.4913 -0.8047 21 6 1.1188 -7.0400 0.0994 22 6 0.6554 -6.2898 1.1655 23 6 1.0812 -4.9884 1.3340 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6028 -1.7186 -1.2970 31 1 1.7545 -0.1567 -2.1368 32 1 3.1260 -0.8024 -1.2040 33 1 1.6128 -0.2558 2.1374 34 1 3.1271 -0.6526 1.2902 35 1 -0.3903 -1.8002 1.5985 36 1 0.0639 -3.5034 1.3515 37 1 -2.4402 -3.6327 4.0485 38 1 3.1373 -4.7624 -1.3569 39 1 2.3679 -7.0819 -1.6355 40 1 0.7820 -8.0583 -0.0282 41 1 -0.0406 -6.7242 1.8679 42 1 0.7184 -4.4037 2.1664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264177224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:30 Heat of formation + Delta-G solvation = -12.385426 kcal Electronic energy + Delta-G solvation = -22430.483050 eV Core-core repulsion = 19375.472209 eV Total energy + Delta-G solvation = -3055.010841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55239 -39.40305 -37.97828 -36.35567 -34.31496 -32.04671 -31.77374 -29.55890 -28.18172 -28.11114 -27.35308 -25.11864 -23.64721 -23.32004 -20.82729 -19.62169 -18.66592 -18.04438 -17.57832 -16.95110 -16.55542 -16.33672 -15.61441 -15.45138 -15.00355 -14.91128 -14.58718 -14.46126 -14.37034 -14.01309 -13.48192 -13.43522 -13.09678 -12.99844 -12.83441 -12.65334 -12.53456 -12.46711 -12.30758 -12.07289 -12.00450 -11.76314 -11.56185 -11.50568 -11.29869 -10.74779 -10.50238 -9.84504 -9.59937 -9.33976 -8.21759 -6.37045 0.09433 0.55955 1.41428 1.43245 1.50105 1.96735 2.30078 2.45022 2.99207 3.07541 3.72443 3.89499 3.95484 4.05076 4.10489 4.20509 4.38822 4.55124 4.57627 4.63848 4.72720 4.74986 4.81173 4.89331 4.91524 4.96191 5.04062 5.05875 5.06344 5.20105 5.23584 5.26102 5.34387 5.47125 5.52292 5.54356 5.62612 5.67089 5.72227 5.88400 6.03265 6.14234 6.57602 6.80865 7.27812 7.39916 8.81246 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011165 B = 0.009461 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.140264 B = 2958.833490 C = 4821.339799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.123 4.123 5 C 0.126 3.874 6 N -0.584 5.584 7 C 0.216 3.784 8 C -0.551 4.551 9 H 0.048 0.952 10 C 0.035 3.965 11 N -0.904 5.904 12 Si 0.948 3.052 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.274 1.274 16 C 0.552 3.448 17 O -0.590 6.590 18 C -0.162 4.162 19 C -0.080 4.080 20 C -0.136 4.136 21 C -0.092 4.092 22 C -0.146 4.146 23 C -0.121 4.121 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.271 0.729 38 H 0.127 0.873 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.129 0.871 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -0.528 -7.342 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.180 4.180 5 C 0.003 3.997 6 N -0.312 5.312 7 C 0.096 3.904 8 C -0.589 4.589 9 H 0.067 0.933 10 C -0.168 4.168 11 N -0.542 5.542 12 Si 0.774 3.226 13 H -0.200 1.200 14 H -0.203 1.203 15 H -0.199 1.199 16 C 0.343 3.657 17 O -0.474 6.474 18 C -0.165 4.165 19 C -0.099 4.099 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.164 4.164 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.147 0.853 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.796 -0.372 -7.481 7.995 hybrid contribution -0.142 -0.033 1.321 1.329 sum 2.655 -0.406 -6.160 6.720 Atomic orbital electron populations 1.21898 0.94376 1.01224 1.01753 1.20935 0.96054 0.96557 0.94617 1.21733 1.00976 0.93214 1.02746 1.21733 1.00443 0.98809 0.97057 1.21515 0.99477 0.80560 0.98155 1.47982 1.21693 1.07561 1.53955 1.20204 0.80595 0.97552 0.92037 1.21506 0.96592 1.47488 0.93289 0.93341 1.25526 0.94554 0.94352 1.02338 1.69987 1.01484 1.45168 1.37526 0.85753 0.77624 0.78700 0.80543 1.19952 1.20254 1.19902 1.18571 0.84069 0.85864 0.77229 1.90609 1.21503 1.81415 1.53859 1.20072 1.02209 0.94461 0.99741 1.21325 0.97875 0.94746 0.95934 1.21378 0.98642 0.94411 1.00884 1.21712 0.95444 1.00757 0.93054 1.21396 1.01401 0.93919 0.99673 1.23241 0.93203 0.96801 1.00627 0.92932 0.91351 0.94210 0.92499 0.90902 0.92002 0.95537 0.91448 0.93301 0.90947 0.91778 0.95314 0.92041 0.91984 0.85518 0.82243 0.82460 0.85282 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 7.51 71.98 0.54 -3.84 16 2 C -0.08 -2.59 0.85 -52.18 -0.04 -2.63 16 3 C -0.13 -3.24 8.47 71.98 0.61 -2.63 16 4 C -0.12 -4.07 7.12 71.98 0.51 -3.56 16 5 C 0.13 4.89 4.59 86.38 0.40 5.28 16 6 N -0.58 -25.71 2.01 -829.57 -1.66 -27.38 16 7 C 0.22 10.34 3.95 85.63 0.34 10.68 16 8 C -0.55 -28.26 7.54 25.60 0.19 -28.06 16 9 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 10 C 0.03 1.77 5.33 84.65 0.45 2.22 16 11 N -0.90 -47.37 13.29 21.44 0.28 -47.08 16 12 Si 0.95 40.83 29.54 68.60 2.03 42.86 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 C 0.55 24.90 5.68 86.79 0.49 25.39 16 17 O -0.59 -27.91 14.64 -3.88 -0.06 -27.96 16 18 C -0.16 -6.78 5.60 -20.09 -0.11 -6.90 16 19 C -0.08 -2.78 9.60 22.53 0.22 -2.57 16 20 C -0.14 -3.73 10.03 22.23 0.22 -3.51 16 21 C -0.09 -2.54 10.04 22.33 0.22 -2.31 16 22 C -0.15 -5.12 10.03 22.23 0.22 -4.90 16 23 C -0.12 -5.15 7.50 22.53 0.17 -4.98 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.49 5.80 -2.39 -0.01 1.48 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.03 0.98 6.63 -2.39 -0.02 0.96 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.73 7.24 -2.39 -0.02 1.71 16 33 H 0.07 2.85 8.07 -2.39 -0.02 2.83 16 34 H 0.06 2.56 7.37 -2.39 -0.02 2.54 16 35 H 0.03 1.44 5.74 -2.39 -0.01 1.43 16 36 H 0.06 3.08 3.98 -2.76 -0.01 3.07 16 37 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.13 4.21 7.92 -2.91 -0.02 4.19 16 39 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.17 8.37 3.03 -2.91 -0.01 8.37 16 Total: -1.00 -58.94 329.55 6.02 -52.92 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 1.00 Total: 28.97 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.43 Total: -22.32 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.38 Total: -74.46 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.06 Total: -27.96 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -58.94 6.02 -52.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264177224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.532 kcal (2) G-P(sol) polarization free energy of solvation -58.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds