Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46686 * 2 1 4 4 C 1.52997 * 109.47528 * 303.15556 * 3 2 1 5 5 C 1.53004 * 109.46893 * 295.53994 * 4 3 2 6 6 C 1.52999 * 109.47085 * 63.15854 * 3 2 1 7 7 N 1.46498 * 109.47349 * 64.99553 * 6 3 2 8 8 C 1.34781 * 119.99877 * 180.02562 * 7 6 3 9 9 O 1.21545 * 120.00099 * 359.97438 * 8 7 6 10 10 C 1.47884 * 119.99773 * 180.02562 * 8 7 6 11 11 C 1.39921 * 120.02710 * 359.71868 * 10 8 7 12 12 C 1.38332 * 120.35965 * 179.74476 * 11 10 8 13 13 C 1.37748 * 120.41218 * 0.56057 * 12 11 10 14 14 C 1.40756 * 120.03640 * 359.69440 * 13 12 11 15 15 C 1.41440 * 120.17226 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99652 * 152.81399 * 15 14 13 17 17 C 1.39934 * 120.00366 * 332.81120 * 15 14 13 18 18 N 1.30821 * 120.00071 * 158.19998 * 17 15 14 19 19 Si 1.86807 * 119.99876 * 338.19612 * 17 15 14 20 20 H 1.48497 * 109.46539 * 95.36277 * 19 17 15 21 21 H 1.48501 * 109.46934 * 215.36244 * 19 17 15 22 22 H 1.48493 * 109.47073 * 335.36502 * 19 17 15 23 23 C 1.38995 * 120.02782 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.47094 * 182.84452 * 1 2 3 25 25 H 1.09002 * 109.47303 * 302.84063 * 1 2 3 26 26 H 1.08997 * 109.47478 * 62.84403 * 1 2 3 27 27 H 1.09001 * 109.46712 * 240.00433 * 2 1 3 28 28 H 1.08996 * 109.47315 * 120.00214 * 2 1 3 29 29 H 1.09004 * 109.46977 * 183.14960 * 3 2 1 30 30 H 1.08996 * 109.47020 * 55.54216 * 4 3 2 31 31 H 1.08998 * 109.47246 * 175.54552 * 4 3 2 32 32 H 1.08992 * 109.47302 * 301.89339 * 5 4 3 33 33 H 1.09003 * 109.46917 * 61.90128 * 5 4 3 34 34 H 1.08996 * 109.46910 * 181.89372 * 5 4 3 35 35 H 1.08998 * 109.47460 * 184.99480 * 6 3 2 36 36 H 1.09004 * 109.46950 * 304.99697 * 6 3 2 37 37 H 0.97002 * 120.00375 * 359.97438 * 7 6 3 38 38 H 1.08008 * 119.82045 * 0.02562 * 11 10 8 39 39 H 1.08000 * 119.79349 * 180.28070 * 12 11 10 40 40 H 1.07998 * 119.98262 * 179.72416 * 13 12 11 41 41 H 0.97001 * 120.00193 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.19959 * 359.95833 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4661 2.1864 -1.2076 5 6 1.9999 1.5561 -2.4955 6 6 1.5958 2.1404 1.2871 7 7 2.2407 1.5013 2.4367 8 6 1.9959 1.9518 3.6832 9 8 1.2404 2.8886 3.8534 10 6 2.6475 1.3070 4.8437 11 6 3.5135 0.2255 4.6488 12 6 4.1308 -0.3795 5.7289 13 6 3.8913 0.0681 7.0094 14 6 3.0190 1.1514 7.2256 15 6 2.7714 1.6136 8.5392 16 1 2.4937 2.6439 8.7057 17 6 2.8863 0.7360 9.6231 18 7 3.0835 1.2066 10.8277 19 14 2.7579 -1.1075 9.3499 20 1 4.1195 -1.6824 9.2058 21 1 2.0765 -1.7337 10.5112 22 1 1.9760 -1.3717 8.1155 23 6 2.3958 1.7714 6.1294 24 1 -0.3633 -1.0264 0.0510 25 1 -0.3634 0.5573 0.8634 26 1 -0.3634 0.4690 -0.9143 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.1285 1.4431 -0.0565 30 1 0.3784 2.1179 -1.1932 31 1 1.7649 3.2337 -1.1648 32 1 3.0892 1.5944 -2.4945 33 1 1.6727 0.5180 -2.5547 34 1 1.6179 2.1069 -3.3550 35 1 1.8819 3.1914 1.2479 36 1 0.5132 2.0621 1.3879 37 1 2.8434 0.7534 2.3010 38 1 3.7047 -0.1362 3.6491 39 1 4.8011 -1.2107 5.5675 40 1 4.3734 -0.4122 7.8480 41 1 3.1635 0.5983 11.5790 42 1 1.7253 2.6037 6.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264186075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -46.643344 kcal Electronic energy + Delta-G solvation = -20803.692760 eV Core-core repulsion = 17747.196384 eV Total energy + Delta-G solvation = -3056.496376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.60404 -37.98907 -37.05889 -33.91934 -33.58575 -31.34686 -30.72704 -30.02805 -28.30730 -25.32160 -24.55196 -23.73251 -22.29840 -20.67408 -19.96246 -19.30195 -17.85525 -16.39344 -16.12661 -15.68209 -15.58038 -15.13025 -14.66948 -14.31704 -13.76924 -13.71647 -13.57554 -13.16627 -12.87257 -12.74321 -12.68433 -12.34557 -12.13635 -11.98067 -11.71604 -11.59726 -11.35923 -11.02787 -10.82121 -10.74979 -10.63922 -10.56557 -10.52458 -10.01961 -9.71106 -9.40203 -9.11879 -8.76378 -7.85760 -7.77320 -7.04701 -4.55311 1.94497 2.52589 3.04508 3.16572 3.25069 3.55952 3.65349 3.91841 4.47226 4.54811 4.61136 4.66569 5.02675 5.09852 5.19810 5.30062 5.34652 5.43326 5.48438 5.52140 5.62309 5.68669 5.74239 5.84726 5.88566 5.94723 5.97471 6.04430 6.05934 6.12098 6.30662 6.41497 6.67670 6.68734 6.76074 6.97776 7.21828 7.42854 7.51943 7.75506 7.82514 8.03975 8.26921 8.54029 8.69083 8.75785 9.97063 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.003585 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.048974 B = 7808.628794 C = 8093.469848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.120 4.120 5 C -0.152 4.152 6 C 0.122 3.878 7 N -0.732 5.732 8 C 0.562 3.438 9 O -0.550 6.550 10 C -0.107 4.107 11 C -0.221 4.221 12 C -0.081 4.081 13 C -0.227 4.227 14 C 0.082 3.918 15 C -0.441 4.441 16 H 0.094 0.906 17 C 0.085 3.915 18 N -0.798 5.798 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.244 1.244 23 C -0.138 4.138 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 -4.246 -19.425 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.119 4.119 4 C -0.158 4.158 5 C -0.209 4.209 6 C -0.002 4.002 7 N -0.386 5.386 8 C 0.352 3.648 9 O -0.428 6.428 10 C -0.110 4.110 11 C -0.241 4.241 12 C -0.099 4.099 13 C -0.247 4.247 14 C 0.079 3.921 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.136 4.136 18 N -0.421 5.421 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.168 1.168 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.438 -3.531 -19.011 19.389 hybrid contribution 0.375 -1.179 0.042 1.238 sum -1.063 -4.710 -18.968 19.573 Atomic orbital electron populations 1.21895 0.95807 1.01666 1.02120 1.21571 0.96490 0.95821 1.01998 1.21449 1.00767 0.95579 0.94143 1.21546 1.01149 0.99406 0.93669 1.21792 1.01066 1.00983 0.97058 1.21383 0.98017 0.96643 0.84135 1.45950 1.49625 1.37145 1.05875 1.18787 0.80488 0.82528 0.82992 1.90692 1.37271 1.28945 1.85909 1.19433 1.00543 0.98446 0.92549 1.20355 1.05538 1.01169 0.96992 1.20497 0.98305 0.98183 0.92951 1.21162 1.04380 1.03317 0.95794 1.17678 0.89998 0.91016 0.93376 1.19533 1.39432 0.99221 0.88729 0.88847 1.26192 0.90591 1.02320 0.94450 1.69718 1.32441 1.39075 1.00892 0.86319 0.79563 0.81293 0.79073 1.19485 1.21625 1.16760 1.21240 1.01601 1.02519 0.90510 0.92935 0.92133 0.92477 0.91704 0.91783 0.90574 0.91224 0.91786 0.92773 0.92467 0.92864 0.91922 0.91392 0.76485 0.88741 0.88372 0.87901 0.90253 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.12 -1.06 5.28 -26.73 -0.14 -1.20 16 3 C -0.10 -0.92 2.21 -90.62 -0.20 -1.12 16 4 C -0.12 -0.94 5.11 -26.73 -0.14 -1.08 16 5 C -0.15 -1.03 9.61 37.16 0.36 -0.67 16 6 C 0.12 1.53 4.91 -4.04 -0.02 1.51 16 7 N -0.73 -10.94 5.20 -61.24 -0.32 -11.26 16 8 C 0.56 11.22 7.77 -12.31 -0.10 11.12 16 9 O -0.55 -12.64 16.33 5.33 0.09 -12.56 16 10 C -0.11 -2.31 5.87 -105.04 -0.62 -2.92 16 11 C -0.22 -4.30 9.55 -38.92 -0.37 -4.67 16 12 C -0.08 -1.67 10.01 -39.73 -0.40 -2.06 16 13 C -0.23 -5.33 7.30 -38.81 -0.28 -5.62 16 14 C 0.08 2.09 5.14 -106.87 -0.55 1.54 16 15 C -0.44 -11.91 9.55 -37.73 -0.36 -12.27 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.19 5.36 -17.35 -0.09 2.10 16 18 N -0.80 -20.96 13.93 55.55 0.77 -20.18 16 19 Si 0.91 20.34 24.57 -169.99 -4.18 16.17 16 20 H -0.27 -5.75 6.64 56.52 0.38 -5.38 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.24 -5.61 6.98 56.52 0.39 -5.21 16 23 C -0.14 -3.38 9.34 -38.45 -0.36 -3.74 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.64 6.27 -51.93 -0.33 0.32 16 26 H 0.06 0.45 6.44 -51.93 -0.33 0.12 16 27 H 0.06 0.49 6.75 -51.93 -0.35 0.14 16 28 H 0.06 0.61 7.11 -51.93 -0.37 0.24 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.55 6.19 -51.93 -0.32 0.22 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 6.71 -51.93 -0.35 0.03 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.91 6.22 -51.93 -0.32 0.58 16 37 H 0.40 5.14 5.67 -40.82 -0.23 4.91 16 38 H 0.09 1.48 6.38 -52.48 -0.33 1.15 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.10 2.39 4.62 -52.49 -0.24 2.15 16 41 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 42 H 0.11 2.85 7.64 -52.48 -0.40 2.45 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -28.83 330.21 -7.72 -36.55 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.13 Total: 6.48 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.92 Total: -20.17 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.45 Total: -31.44 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.18 Total: 16.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.83 -7.72 -36.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264186075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.096 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds