Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46686 * 2 1 4 4 C 1.52997 * 109.47528 * 303.15556 * 3 2 1 5 5 C 1.53004 * 109.46893 * 295.53994 * 4 3 2 6 6 C 1.52999 * 109.47085 * 63.15854 * 3 2 1 7 7 N 1.46498 * 109.47349 * 64.99553 * 6 3 2 8 8 C 1.34781 * 119.99877 * 180.02562 * 7 6 3 9 9 O 1.21545 * 120.00099 * 359.97438 * 8 7 6 10 10 C 1.47884 * 119.99773 * 180.02562 * 8 7 6 11 11 C 1.39921 * 120.02710 * 359.71868 * 10 8 7 12 12 C 1.38332 * 120.35965 * 179.74476 * 11 10 8 13 13 C 1.37748 * 120.41218 * 0.56057 * 12 11 10 14 14 C 1.40756 * 120.03640 * 359.69440 * 13 12 11 15 15 C 1.41440 * 120.17226 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99652 * 152.81399 * 15 14 13 17 17 C 1.39934 * 120.00366 * 332.81120 * 15 14 13 18 18 N 1.30821 * 120.00071 * 158.19998 * 17 15 14 19 19 Si 1.86807 * 119.99876 * 338.19612 * 17 15 14 20 20 H 1.48497 * 109.46539 * 95.36277 * 19 17 15 21 21 H 1.48501 * 109.46934 * 215.36244 * 19 17 15 22 22 H 1.48493 * 109.47073 * 335.36502 * 19 17 15 23 23 C 1.38995 * 120.02782 * 179.97438 * 10 8 7 24 24 H 1.09005 * 109.47094 * 182.84452 * 1 2 3 25 25 H 1.09002 * 109.47303 * 302.84063 * 1 2 3 26 26 H 1.08997 * 109.47478 * 62.84403 * 1 2 3 27 27 H 1.09001 * 109.46712 * 240.00433 * 2 1 3 28 28 H 1.08996 * 109.47315 * 120.00214 * 2 1 3 29 29 H 1.09004 * 109.46977 * 183.14960 * 3 2 1 30 30 H 1.08996 * 109.47020 * 55.54216 * 4 3 2 31 31 H 1.08998 * 109.47246 * 175.54552 * 4 3 2 32 32 H 1.08992 * 109.47302 * 301.89339 * 5 4 3 33 33 H 1.09003 * 109.46917 * 61.90128 * 5 4 3 34 34 H 1.08996 * 109.46910 * 181.89372 * 5 4 3 35 35 H 1.08998 * 109.47460 * 184.99480 * 6 3 2 36 36 H 1.09004 * 109.46950 * 304.99697 * 6 3 2 37 37 H 0.97002 * 120.00375 * 359.97438 * 7 6 3 38 38 H 1.08008 * 119.82045 * 0.02562 * 11 10 8 39 39 H 1.08000 * 119.79349 * 180.28070 * 12 11 10 40 40 H 1.07998 * 119.98262 * 179.72416 * 13 12 11 41 41 H 0.97001 * 120.00193 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.19959 * 359.95833 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4661 2.1864 -1.2076 5 6 1.9999 1.5561 -2.4955 6 6 1.5958 2.1404 1.2871 7 7 2.2407 1.5013 2.4367 8 6 1.9959 1.9518 3.6832 9 8 1.2404 2.8886 3.8534 10 6 2.6475 1.3070 4.8437 11 6 3.5135 0.2255 4.6488 12 6 4.1308 -0.3795 5.7289 13 6 3.8913 0.0681 7.0094 14 6 3.0190 1.1514 7.2256 15 6 2.7714 1.6136 8.5392 16 1 2.4937 2.6439 8.7057 17 6 2.8863 0.7360 9.6231 18 7 3.0835 1.2066 10.8277 19 14 2.7579 -1.1075 9.3499 20 1 4.1195 -1.6824 9.2058 21 1 2.0765 -1.7337 10.5112 22 1 1.9760 -1.3717 8.1155 23 6 2.3958 1.7714 6.1294 24 1 -0.3633 -1.0264 0.0510 25 1 -0.3634 0.5573 0.8634 26 1 -0.3634 0.4690 -0.9143 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.1285 1.4431 -0.0565 30 1 0.3784 2.1179 -1.1932 31 1 1.7649 3.2337 -1.1648 32 1 3.0892 1.5944 -2.4945 33 1 1.6727 0.5180 -2.5547 34 1 1.6179 2.1069 -3.3550 35 1 1.8819 3.1914 1.2479 36 1 0.5132 2.0621 1.3879 37 1 2.8434 0.7534 2.3010 38 1 3.7047 -0.1362 3.6491 39 1 4.8011 -1.2107 5.5675 40 1 4.3734 -0.4122 7.8480 41 1 3.1635 0.5983 11.5790 42 1 1.7253 2.6037 6.2849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264186075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -63.847656 kcal Electronic energy + Delta-G solvation = -20804.438794 eV Core-core repulsion = 17747.196384 eV Total energy + Delta-G solvation = -3057.242411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09714 -39.29619 -38.47000 -35.64915 -35.04317 -32.54411 -31.95040 -31.75904 -29.33830 -27.11395 -25.61228 -24.74440 -23.54861 -22.44572 -21.53586 -20.24410 -19.40881 -18.10833 -17.30256 -17.14739 -16.85816 -16.44068 -16.11765 -15.59145 -15.41416 -15.16576 -14.60384 -14.48287 -14.41751 -13.88035 -13.81227 -13.57755 -13.37126 -13.24004 -12.83506 -12.74329 -12.72787 -12.37690 -12.30788 -12.04590 -11.77787 -11.56962 -11.48592 -11.32887 -11.23953 -11.16830 -10.81423 -10.14120 -9.64453 -9.56068 -8.95546 -6.55545 0.18680 0.74227 1.24784 1.41562 1.48069 1.95272 2.12162 2.22231 2.63337 3.46350 3.74750 3.88763 3.89402 3.99501 4.26248 4.36218 4.41241 4.43730 4.57121 4.58334 4.60395 4.71050 4.77052 4.88865 4.89252 4.92052 4.99660 5.07954 5.12922 5.15175 5.30717 5.33338 5.38230 5.41950 5.42626 5.48223 5.63784 5.66060 5.72157 5.83953 6.10615 6.29094 6.58755 6.66327 6.72592 7.24605 8.13282 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035343 B = 0.003585 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.048974 B = 7808.628794 C = 8093.469848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.119 3.881 7 N -0.707 5.707 8 C 0.559 3.441 9 O -0.590 6.590 10 C -0.112 4.112 11 C -0.187 4.187 12 C -0.080 4.080 13 C -0.231 4.231 14 C 0.067 3.933 15 C -0.489 4.489 16 H 0.049 0.951 17 C 0.047 3.953 18 N -0.842 5.842 19 Si 0.968 3.032 20 H -0.245 1.245 21 H -0.276 1.276 22 H -0.254 1.254 23 C -0.172 4.172 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.413 0.587 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.297 0.703 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -7.591 -23.144 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.157 4.157 3 C -0.109 4.109 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.004 4.004 7 N -0.359 5.359 8 C 0.348 3.652 9 O -0.471 6.471 10 C -0.115 4.115 11 C -0.206 4.206 12 C -0.097 4.097 13 C -0.250 4.250 14 C 0.064 3.936 15 C -0.518 4.518 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.468 5.468 19 Si 0.790 3.210 20 H -0.169 1.169 21 H -0.202 1.202 22 H -0.177 1.177 23 C -0.192 4.192 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.140 -6.893 -22.771 23.792 hybrid contribution -0.102 -0.087 0.911 0.920 sum 0.037 -6.980 -21.860 22.948 Atomic orbital electron populations 1.21898 0.96290 1.01676 1.01707 1.21592 0.96038 0.95361 1.02756 1.21407 1.01430 0.95652 0.92361 1.21544 1.01133 0.99291 0.93767 1.21768 1.01251 1.01225 0.96337 1.21582 0.97497 0.96628 0.84730 1.45768 1.48717 1.36705 1.04745 1.18637 0.80234 0.82197 0.84141 1.90681 1.39097 1.30770 1.86596 1.19718 1.00785 0.98980 0.92028 1.20972 1.01867 0.98315 0.99469 1.21035 0.98263 0.98989 0.91448 1.21385 1.03536 1.02337 0.97766 1.17761 0.90834 0.92307 0.92653 1.19474 1.43445 0.98065 0.90838 0.93245 1.26928 0.89825 1.06292 0.93764 1.69742 1.34442 1.40805 1.01786 0.85470 0.80538 0.76135 0.78857 1.16939 1.20213 1.17741 1.21163 1.02773 1.03039 0.92240 0.92538 0.94257 0.91430 0.89747 0.92165 0.89402 0.91335 0.92037 0.92420 0.91906 0.92320 0.92759 0.92247 0.74796 0.83434 0.83461 0.87543 0.89282 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.19 71.98 0.66 -1.80 16 2 C -0.12 -1.65 5.28 30.59 0.16 -1.48 16 3 C -0.09 -1.34 2.21 -10.80 -0.02 -1.36 16 4 C -0.12 -1.55 5.11 30.59 0.16 -1.40 16 5 C -0.15 -1.50 9.61 71.98 0.69 -0.80 16 6 C 0.12 2.75 4.91 86.38 0.42 3.18 16 7 N -0.71 -19.17 5.20 -465.93 -2.42 -21.59 16 8 C 0.56 21.80 7.77 86.80 0.67 22.47 16 9 O -0.59 -27.80 16.33 -3.86 -0.06 -27.86 16 10 C -0.11 -4.71 5.87 -20.13 -0.12 -4.83 16 11 C -0.19 -6.40 9.55 22.70 0.22 -6.18 16 12 C -0.08 -2.88 10.01 22.18 0.22 -2.66 16 13 C -0.23 -10.43 7.30 22.77 0.17 -10.27 16 14 C 0.07 3.51 5.14 -21.32 -0.11 3.40 16 15 C -0.49 -28.42 9.55 23.47 0.22 -28.20 16 16 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 17 C 0.05 2.56 5.36 85.25 0.46 3.01 16 18 N -0.84 -46.48 13.93 21.82 0.30 -46.18 16 19 Si 0.97 41.70 24.57 68.60 1.69 43.39 16 20 H -0.24 -9.53 6.64 99.48 0.66 -8.87 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.25 -11.18 6.98 99.48 0.69 -10.48 16 23 C -0.17 -8.73 9.34 23.01 0.21 -8.52 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.04 0.77 6.27 -2.39 -0.01 0.76 16 26 H 0.07 0.89 6.44 -2.39 -0.02 0.88 16 27 H 0.08 0.89 6.75 -2.39 -0.02 0.87 16 28 H 0.06 0.88 7.11 -2.39 -0.02 0.86 16 29 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 0.91 6.19 -2.39 -0.01 0.90 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.57 6.71 -2.39 -0.02 0.56 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.53 6.22 -2.38 -0.01 1.51 16 37 H 0.41 8.66 5.67 -92.71 -0.53 8.13 16 38 H 0.15 3.53 6.38 -2.91 -0.02 3.51 16 39 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.11 4.71 4.62 -2.91 -0.01 4.70 16 41 H 0.30 14.51 8.30 -92.71 -0.77 13.74 16 42 H 0.09 4.76 7.64 -2.91 -0.02 4.74 16 Total: -1.00 -67.98 330.21 3.96 -64.02 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.44 Total: 23.65 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 4.02 Total: -35.43 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -2.12 Total: -67.77 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.86 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.69 Total: 43.39 kcal Total: -67.98 3.96 -64.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264186075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.171 kcal (2) G-P(sol) polarization free energy of solvation -67.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds