Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38146 * 120.02859 * 2 1 4 4 C 1.38268 * 120.05881 * 180.30145 * 3 2 1 5 5 C 1.38266 * 120.10658 * 359.67907 * 4 3 2 6 6 C 1.38142 * 120.05939 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.03209 * 179.97438 * 6 5 4 8 8 C 1.38730 * 120.02730 * 179.70581 * 2 1 3 9 9 O 1.35899 * 120.05721 * 359.97438 * 8 2 1 10 10 C 1.42899 * 117.00075 * 269.73068 * 9 8 2 11 11 C 1.52997 * 109.46928 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47565 * 65.00034 * 11 10 9 13 13 C 1.36943 * 119.99584 * 269.99767 * 12 11 10 14 14 H 1.08002 * 119.99376 * 144.73888 * 13 12 11 15 15 C 1.38808 * 120.00165 * 324.73827 * 13 12 11 16 16 N 1.31620 * 119.99987 * 338.09712 * 15 13 12 17 17 Si 1.86802 * 119.99895 * 158.09913 * 15 13 12 18 18 H 1.48504 * 109.47104 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46948 * 119.99901 * 17 15 13 20 20 H 1.48496 * 109.46942 * 239.99831 * 17 15 13 21 21 C 1.46497 * 120.00399 * 90.00159 * 12 11 10 22 22 C 1.52993 * 117.50097 * 183.24315 * 21 12 11 23 23 C 1.52998 * 117.50406 * 114.57524 * 21 12 11 24 24 H 1.09003 * 109.47757 * 270.29657 * 1 2 3 25 25 H 1.09004 * 109.47492 * 30.29615 * 1 2 3 26 26 H 1.09009 * 109.47483 * 150.29292 * 1 2 3 27 27 H 1.08007 * 119.97535 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.94826 * 179.70151 * 4 3 2 29 29 H 1.08007 * 119.97259 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.46836 * 270.02499 * 7 6 5 31 31 H 1.09005 * 109.46969 * 30.01773 * 7 6 5 32 32 H 1.08998 * 109.47446 * 150.02126 * 7 6 5 33 33 H 1.08999 * 109.47005 * 59.99535 * 10 9 8 34 34 H 1.09000 * 109.47143 * 300.00050 * 10 9 8 35 35 H 1.09003 * 109.47013 * 304.99348 * 11 10 9 36 36 H 1.09010 * 109.47137 * 184.99989 * 11 10 9 37 37 H 0.96995 * 119.99672 * 175.90382 * 16 15 13 38 38 H 1.09004 * 115.54906 * 328.90311 * 21 12 11 39 39 H 1.09001 * 117.50276 * 359.97438 * 22 21 12 40 40 H 1.09003 * 117.50311 * 145.01731 * 22 21 12 41 41 H 1.08994 * 117.50202 * 214.97722 * 23 21 12 42 42 H 1.09002 * 117.49588 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5809 1.1968 -0.0063 5 6 4.2751 0.0010 -0.0059 6 6 3.5885 -1.1977 0.0002 7 6 4.3458 -2.5006 0.0001 8 6 2.2011 -1.2011 0.0062 9 8 1.5234 -2.3790 0.0127 10 6 1.2055 -2.9375 1.2891 11 6 0.4487 -4.2531 1.0959 12 7 1.3280 -5.2324 0.4525 13 6 1.3700 -5.3214 -0.9134 14 1 2.3002 -5.5526 -1.4110 15 6 0.2170 -5.1147 -1.6582 16 7 -0.9643 -5.2612 -1.0966 17 14 0.3420 -4.6287 -3.4575 18 1 1.7721 -4.5310 -3.8456 19 1 -0.3287 -5.6552 -4.2952 20 1 -0.3179 -3.3143 -3.6622 21 6 2.1622 -6.1164 1.2702 22 6 3.1146 -7.0646 0.5391 23 6 1.8607 -7.6156 1.2228 24 1 -0.3635 0.0053 1.0276 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8927 -0.5093 27 1 1.6583 2.1314 -0.0004 28 1 4.1195 2.1328 -0.0112 29 1 5.3552 0.0041 -0.0104 30 1 4.5241 -2.8171 -1.0277 31 1 5.3001 -2.3663 0.5095 32 1 3.7611 -3.2608 0.5181 33 1 0.5827 -2.2380 1.8468 34 1 2.1254 -3.1258 1.8426 35 1 -0.4249 -4.0807 0.4672 36 1 0.1288 -4.6340 2.0659 37 1 -1.7688 -5.0593 -1.5996 38 1 2.4975 -5.7003 2.2203 39 1 3.1202 -7.0311 -0.5504 40 1 4.0762 -7.2728 1.0082 41 1 1.9979 -8.1859 2.1414 42 1 1.0413 -7.9442 0.5835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264242159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = 30.054897 kcal Electronic energy + Delta-G solvation = -22230.666684 eV Core-core repulsion = 19177.496194 eV Total energy + Delta-G solvation = -3053.170490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.71975 -37.26051 -36.38397 -33.44998 -33.24056 -31.19510 -30.42725 -28.08149 -26.41342 -26.32315 -24.22653 -21.87691 -21.38861 -21.13273 -20.53118 -19.61356 -17.15492 -16.40340 -15.89014 -15.40890 -15.01364 -14.64913 -14.27767 -13.82798 -13.68513 -13.42192 -12.95283 -12.77682 -12.68884 -12.37782 -12.23438 -11.93798 -11.70427 -11.51114 -11.27694 -11.09736 -10.99615 -10.77559 -10.64066 -10.56740 -10.29905 -10.01551 -9.67817 -9.57841 -9.28468 -9.00461 -8.36206 -8.31473 -8.05025 -6.50034 -5.69178 -3.27021 1.56520 1.60531 3.44544 3.52865 3.56490 3.83899 4.51408 4.58144 4.96393 5.07984 5.10706 5.20667 5.25574 5.47473 5.48306 5.68907 5.81502 5.85160 5.90670 5.91247 6.00540 6.04371 6.10747 6.12706 6.13062 6.16708 6.31301 6.43646 6.48190 6.52562 6.67320 6.68218 6.69803 6.70797 6.78311 6.97869 7.06235 7.16323 7.24731 7.65143 7.90090 8.35637 8.58417 9.22877 9.87714 10.40292 11.28505 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.007078 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.927115 B = 3955.073829 C = 4590.899576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.120 4.120 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.108 4.108 8 C 0.107 3.893 9 O -0.296 6.296 10 C 0.058 3.942 11 C 0.142 3.858 12 N -0.544 5.544 13 C -0.234 4.234 14 H 0.062 0.938 15 C 0.018 3.982 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.288 1.288 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.222 4.222 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.111 0.889 36 H 0.046 0.954 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 9.203 5.333 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.101 4.101 7 C -0.165 4.165 8 C 0.063 3.937 9 O -0.212 6.212 10 C -0.019 4.019 11 C 0.015 3.985 12 N -0.260 5.260 13 C -0.363 4.363 14 H 0.080 0.920 15 C -0.182 4.182 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.215 1.215 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.263 4.263 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.189 9.071 5.084 12.101 hybrid contribution 0.150 0.473 -0.802 0.943 sum 6.339 9.544 4.282 12.231 Atomic orbital electron populations 1.20685 0.90917 1.03214 1.01980 1.20294 0.96732 0.92684 1.01157 1.20835 0.94111 0.96868 1.02030 1.20979 0.94198 0.97634 1.02314 1.20869 0.99348 0.91731 1.01891 1.20345 0.93497 0.96034 1.00194 1.20682 0.98576 0.94399 1.02806 1.18700 0.89693 0.86592 0.98740 1.86332 1.73505 1.32519 1.28890 1.23688 0.98049 0.96906 0.83219 1.21108 0.95787 0.84440 0.97158 1.43318 1.46187 1.34442 1.02066 1.18903 0.92729 1.43813 0.80870 0.92005 1.24943 0.95155 1.00589 0.97476 1.70015 0.96773 1.49305 1.37224 0.86389 0.77689 0.77920 0.85708 1.20238 1.22223 1.21460 1.21220 0.96985 0.86176 0.94618 1.23015 0.92770 1.06829 1.00698 1.23367 0.99735 1.01796 1.01417 0.91709 0.92120 0.90204 0.86423 0.86542 0.86386 0.91104 0.92738 0.90005 0.95208 0.94927 0.87155 0.93570 0.93859 0.89882 0.88454 0.90929 0.91388 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.79 36.00 0.35 -1.36 16 2 C -0.11 -1.81 5.89 -104.48 -0.62 -2.42 16 3 C -0.12 -1.71 9.70 -39.60 -0.38 -2.09 16 4 C -0.13 -1.78 10.04 -39.56 -0.40 -2.18 16 5 C -0.12 -1.74 9.70 -39.61 -0.38 -2.12 16 6 C -0.10 -1.72 5.89 -104.47 -0.62 -2.33 16 7 C -0.11 -1.78 9.79 36.01 0.35 -1.43 16 8 C 0.11 2.02 5.67 -39.21 -0.22 1.80 16 9 O -0.30 -6.34 7.79 -19.42 -0.15 -6.49 16 10 C 0.06 1.14 6.03 37.16 0.22 1.36 16 11 C 0.14 3.17 5.76 -4.05 -0.02 3.14 16 12 N -0.54 -12.90 2.76 -165.67 -0.46 -13.35 16 13 C -0.23 -6.17 8.13 -15.06 -0.12 -6.29 16 14 H 0.06 1.68 6.56 -52.49 -0.34 1.33 16 15 C 0.02 0.48 4.97 -17.43 -0.09 0.39 16 16 N -0.89 -25.11 11.33 55.49 0.63 -24.48 16 17 Si 0.89 22.32 29.61 -169.99 -5.03 17.29 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 C 0.12 2.47 6.56 -67.94 -0.45 2.03 16 22 C -0.19 -3.79 9.80 -26.69 -0.26 -4.05 16 23 C -0.22 -4.46 10.36 -26.69 -0.28 -4.74 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.08 1.44 7.53 -51.92 -0.39 1.04 16 27 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.08 1.52 6.33 -51.93 -0.33 1.19 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.62 7.26 -51.93 -0.38 0.24 16 35 H 0.11 2.84 5.36 -51.93 -0.28 2.56 16 36 H 0.05 0.96 8.07 -51.92 -0.42 0.54 16 37 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -28.72 344.04 -9.41 -38.13 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.67 Total: 4.02 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.91 Total: -20.29 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.17 Total: -37.84 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.15 Total: -6.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.72 -9.41 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264242159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.181 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds