Wall clock time and date at job start Mon Mar 30 2020 01:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38146 * 120.02859 * 2 1 4 4 C 1.38268 * 120.05881 * 180.30145 * 3 2 1 5 5 C 1.38266 * 120.10658 * 359.67907 * 4 3 2 6 6 C 1.38142 * 120.05939 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.03209 * 179.97438 * 6 5 4 8 8 C 1.38730 * 120.02730 * 179.70581 * 2 1 3 9 9 O 1.35899 * 120.05721 * 359.97438 * 8 2 1 10 10 C 1.42899 * 117.00075 * 269.73068 * 9 8 2 11 11 C 1.52997 * 109.46928 * 180.02562 * 10 9 8 12 12 N 1.46494 * 109.47565 * 65.00034 * 11 10 9 13 13 C 1.36943 * 119.99584 * 269.99767 * 12 11 10 14 14 H 1.08002 * 119.99376 * 144.73888 * 13 12 11 15 15 C 1.38808 * 120.00165 * 324.73827 * 13 12 11 16 16 N 1.31620 * 119.99987 * 338.09712 * 15 13 12 17 17 Si 1.86802 * 119.99895 * 158.09913 * 15 13 12 18 18 H 1.48504 * 109.47104 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46948 * 119.99901 * 17 15 13 20 20 H 1.48496 * 109.46942 * 239.99831 * 17 15 13 21 21 C 1.46497 * 120.00399 * 90.00159 * 12 11 10 22 22 C 1.52993 * 117.50097 * 183.24315 * 21 12 11 23 23 C 1.52998 * 117.50406 * 114.57524 * 21 12 11 24 24 H 1.09003 * 109.47757 * 270.29657 * 1 2 3 25 25 H 1.09004 * 109.47492 * 30.29615 * 1 2 3 26 26 H 1.09009 * 109.47483 * 150.29292 * 1 2 3 27 27 H 1.08007 * 119.97535 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.94826 * 179.70151 * 4 3 2 29 29 H 1.08007 * 119.97259 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.46836 * 270.02499 * 7 6 5 31 31 H 1.09005 * 109.46969 * 30.01773 * 7 6 5 32 32 H 1.08998 * 109.47446 * 150.02126 * 7 6 5 33 33 H 1.08999 * 109.47005 * 59.99535 * 10 9 8 34 34 H 1.09000 * 109.47143 * 300.00050 * 10 9 8 35 35 H 1.09003 * 109.47013 * 304.99348 * 11 10 9 36 36 H 1.09010 * 109.47137 * 184.99989 * 11 10 9 37 37 H 0.96995 * 119.99672 * 175.90382 * 16 15 13 38 38 H 1.09004 * 115.54906 * 328.90311 * 21 12 11 39 39 H 1.09001 * 117.50276 * 359.97438 * 22 21 12 40 40 H 1.09003 * 117.50311 * 145.01731 * 22 21 12 41 41 H 1.08994 * 117.50202 * 214.97722 * 23 21 12 42 42 H 1.09002 * 117.49588 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5809 1.1968 -0.0063 5 6 4.2751 0.0010 -0.0059 6 6 3.5885 -1.1977 0.0002 7 6 4.3458 -2.5006 0.0001 8 6 2.2011 -1.2011 0.0062 9 8 1.5234 -2.3790 0.0127 10 6 1.2055 -2.9375 1.2891 11 6 0.4487 -4.2531 1.0959 12 7 1.3280 -5.2324 0.4525 13 6 1.3700 -5.3214 -0.9134 14 1 2.3002 -5.5526 -1.4110 15 6 0.2170 -5.1147 -1.6582 16 7 -0.9643 -5.2612 -1.0966 17 14 0.3420 -4.6287 -3.4575 18 1 1.7721 -4.5310 -3.8456 19 1 -0.3287 -5.6552 -4.2952 20 1 -0.3179 -3.3143 -3.6622 21 6 2.1622 -6.1164 1.2702 22 6 3.1146 -7.0646 0.5391 23 6 1.8607 -7.6156 1.2228 24 1 -0.3635 0.0053 1.0276 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8927 -0.5093 27 1 1.6583 2.1314 -0.0004 28 1 4.1195 2.1328 -0.0112 29 1 5.3552 0.0041 -0.0104 30 1 4.5241 -2.8171 -1.0277 31 1 5.3001 -2.3663 0.5095 32 1 3.7611 -3.2608 0.5181 33 1 0.5827 -2.2380 1.8468 34 1 2.1254 -3.1258 1.8426 35 1 -0.4249 -4.0807 0.4672 36 1 0.1288 -4.6340 2.0659 37 1 -1.7688 -5.0593 -1.5996 38 1 2.4975 -5.7003 2.2203 39 1 3.1202 -7.0311 -0.5504 40 1 4.0762 -7.2728 1.0082 41 1 1.9979 -8.1859 2.1414 42 1 1.0413 -7.9442 0.5835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264242159.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:20 Heat of formation + Delta-G solvation = 16.611018 kcal Electronic energy + Delta-G solvation = -22231.249655 eV Core-core repulsion = 19177.496194 eV Total energy + Delta-G solvation = -3053.753461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99619 -38.89059 -37.85426 -35.26183 -34.44395 -32.96070 -31.80891 -29.79461 -27.77969 -27.48681 -26.13065 -23.48673 -22.89541 -22.52216 -21.73274 -21.41661 -18.53319 -18.24228 -17.30876 -17.13159 -16.41359 -16.21578 -15.76162 -15.67072 -14.97223 -14.87773 -14.42055 -14.13011 -13.94497 -13.80836 -13.66020 -13.48787 -13.43282 -12.97167 -12.77331 -12.64402 -12.56474 -12.41843 -12.22440 -12.11781 -11.92531 -11.84628 -11.53404 -11.31915 -10.88816 -10.48539 -10.38775 -9.47683 -9.30354 -8.46578 -7.72925 -5.33383 0.36552 0.43791 1.39674 1.45152 1.51979 2.52920 2.64128 3.17134 3.22706 3.50252 3.52486 3.91261 3.97141 4.15045 4.31843 4.41254 4.44941 4.45231 4.51688 4.55879 4.60639 4.63061 4.69430 4.74924 4.77924 4.84432 4.90511 4.95922 4.96585 5.03337 5.10731 5.25168 5.39072 5.42135 5.57327 5.57806 5.59092 5.72861 5.76355 5.82602 6.02339 6.51290 6.97795 7.23071 7.93284 8.40439 9.19202 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.007078 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.927115 B = 3955.073829 C = 4590.899576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.101 4.101 8 C 0.068 3.932 9 O -0.326 6.326 10 C 0.071 3.929 11 C 0.142 3.858 12 N -0.557 5.557 13 C -0.220 4.220 14 H 0.050 0.950 15 C -0.026 4.026 16 N -0.915 5.915 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.296 1.296 21 C 0.102 3.898 22 C -0.182 4.182 23 C -0.216 4.216 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.246 0.754 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.648 11.165 6.495 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.135 4.135 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.157 4.157 8 C 0.024 3.976 9 O -0.243 6.243 10 C -0.005 4.005 11 C 0.015 3.985 12 N -0.274 5.274 13 C -0.351 4.351 14 H 0.068 0.932 15 C -0.222 4.222 16 N -0.561 5.561 17 Si 0.765 3.235 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.224 1.224 21 C -0.006 4.006 22 C -0.220 4.220 23 C -0.257 4.257 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.420 11.029 6.253 15.219 hybrid contribution -0.449 -0.071 -1.114 1.203 sum 7.971 10.958 5.139 14.492 Atomic orbital electron populations 1.20630 0.90718 1.02444 1.02462 1.20515 0.97222 0.93088 1.01838 1.21207 0.94858 0.96923 1.00560 1.21454 0.94017 0.98804 0.99837 1.21218 1.00826 0.91024 1.00575 1.20518 0.93047 0.97246 1.01282 1.20584 0.99505 0.93770 1.01851 1.19055 0.90656 0.86303 1.01584 1.86270 1.74265 1.34191 1.29529 1.23372 0.98061 0.95733 0.83333 1.21006 0.94929 0.85836 0.96696 1.43417 1.46725 1.35681 1.01560 1.18903 0.91852 1.41836 0.82466 0.93200 1.25367 0.95226 1.01961 0.99658 1.70110 0.96915 1.51164 1.37898 0.85720 0.77326 0.77063 0.83384 1.20095 1.22280 1.22353 1.21515 0.97245 0.86192 0.95646 1.23006 0.94153 1.05477 0.99362 1.23273 0.98885 1.01393 1.02148 0.90677 0.89777 0.93899 0.83432 0.82682 0.83583 0.92554 0.89813 0.92648 0.93836 0.94240 0.90589 0.92410 0.94457 0.87114 0.91022 0.87229 0.88023 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.23 9.79 71.23 0.70 -2.53 16 2 C -0.13 -4.08 5.89 -19.77 -0.12 -4.20 16 3 C -0.12 -2.96 9.70 22.25 0.22 -2.74 16 4 C -0.12 -2.78 10.04 22.28 0.22 -2.55 16 5 C -0.12 -3.04 9.70 22.25 0.22 -2.82 16 6 C -0.12 -3.98 5.89 -19.77 -0.12 -4.10 16 7 C -0.10 -3.26 9.79 71.24 0.70 -2.56 16 8 C 0.07 2.56 5.67 22.51 0.13 2.68 16 9 O -0.33 -14.35 7.79 -92.41 -0.72 -15.07 16 10 C 0.07 2.85 6.03 71.98 0.43 3.28 16 11 C 0.14 6.50 5.76 86.38 0.50 7.00 16 12 N -0.56 -26.91 2.76 -678.05 -1.87 -28.78 16 13 C -0.22 -11.98 8.13 84.03 0.68 -11.30 16 14 H 0.05 2.80 6.56 -2.91 -0.02 2.78 16 15 C -0.03 -1.46 4.97 84.86 0.42 -1.04 16 16 N -0.92 -53.89 11.33 21.65 0.25 -53.64 16 17 Si 0.93 47.53 29.61 68.60 2.03 49.56 16 18 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 21 C 0.10 4.15 6.56 44.99 0.30 4.45 16 22 C -0.18 -6.85 9.80 30.62 0.30 -6.55 16 23 C -0.22 -8.47 10.36 30.62 0.32 -8.15 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.08 8.09 -2.39 -0.02 2.07 16 26 H 0.04 1.61 7.53 -2.38 -0.02 1.59 16 27 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.12 8.09 -2.38 -0.02 2.10 16 32 H 0.05 2.07 6.33 -2.39 -0.02 2.05 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.49 7.26 -2.39 -0.02 1.48 16 35 H 0.08 4.10 5.36 -2.39 -0.01 4.09 16 36 H 0.06 2.43 8.07 -2.38 -0.02 2.42 16 37 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 38 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 39 H 0.07 3.09 6.37 -2.39 -0.02 3.07 16 40 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.07 344.04 5.57 -59.50 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.99 Total: 19.57 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 4.89 Total: -31.14 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.62 Total: -82.42 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.72 Total: -15.07 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -65.07 5.57 -59.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264242159.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.114 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds