Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 110.01023 * 2 1 4 4 C 1.54315 * 109.88884 * 238.88359 * 2 1 3 5 5 C 1.55435 * 103.04753 * 262.87413 * 4 2 1 6 6 C 1.54907 * 101.51852 * 324.36830 * 5 4 2 7 7 N 1.47444 * 109.89084 * 121.11387 * 2 1 3 8 8 C 1.46904 * 110.99913 * 242.66368 * 7 2 1 9 9 C 1.50697 * 109.47039 * 175.89359 * 8 7 2 10 10 C 1.38294 * 119.93564 * 274.43854 * 9 8 7 11 11 C 1.38098 * 120.07369 * 179.72313 * 10 9 8 12 12 C 1.38880 * 119.92459 * 0.57433 * 11 10 9 13 13 O 1.35758 * 120.06841 * 179.68350 * 12 11 10 14 14 C 1.34825 * 117.00102 * 174.80709 * 13 12 11 15 15 H 1.07997 * 120.00117 * 4.90527 * 14 13 12 16 16 C 1.38659 * 120.00083 * 184.89518 * 14 13 12 17 17 N 1.31558 * 119.99866 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00157 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47041 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46694 * 120.00487 * 18 16 14 21 21 H 1.48495 * 109.47146 * 240.00874 * 18 16 14 22 22 C 1.38873 * 119.86585 * 359.69880 * 12 11 10 23 23 C 1.38101 * 119.93204 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47439 * 298.88404 * 1 2 3 25 25 H 1.09003 * 109.47397 * 58.88533 * 1 2 3 26 26 H 1.09004 * 109.47231 * 178.88983 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.13877 * 3 2 1 28 28 H 1.09004 * 109.46541 * 299.13690 * 3 2 1 29 29 H 1.08998 * 109.47169 * 59.13187 * 3 2 1 30 30 H 1.08994 * 110.70684 * 21.25825 * 4 2 1 31 31 H 1.09006 * 110.70689 * 144.31809 * 4 2 1 32 32 H 1.08998 * 111.10958 * 206.29670 * 5 4 2 33 33 H 1.08999 * 110.99808 * 82.38840 * 5 4 2 34 34 H 1.09001 * 110.37027 * 278.17062 * 6 5 4 35 35 H 1.09002 * 110.36859 * 155.94846 * 6 5 4 36 36 H 1.09000 * 109.47633 * 295.89676 * 8 7 2 37 37 H 1.09003 * 109.46967 * 55.90140 * 8 7 2 38 38 H 1.08006 * 119.96830 * 359.97438 * 10 9 8 39 39 H 1.08002 * 120.04008 * 180.26940 * 11 10 9 40 40 H 0.96995 * 120.00188 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03903 * 179.97438 * 22 12 11 42 42 H 1.07994 * 119.97178 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0535 1.4377 0.0000 4 6 2.0549 -0.7499 -1.2423 5 6 2.3509 -2.1737 -0.6936 6 6 2.8585 -1.8554 0.7349 7 7 2.0316 -0.7165 1.1870 8 6 2.8029 0.1815 2.0569 9 6 3.2125 -0.5574 3.3048 10 6 2.3479 -0.6250 4.3820 11 6 2.7180 -1.3063 5.5248 12 6 3.9648 -1.9138 5.5960 13 8 4.3342 -2.5788 6.7204 14 6 5.5111 -3.2358 6.6843 15 1 6.1497 -3.1524 5.8174 16 6 5.9015 -4.0183 7.7603 17 7 5.1235 -4.1201 8.8163 18 14 7.5317 -4.9291 7.7101 19 1 8.2141 -4.6517 6.4206 20 1 8.3895 -4.4708 8.8323 21 1 7.2876 -6.3883 7.8374 22 6 4.8331 -1.8394 4.5148 23 6 4.4549 -1.1615 3.3726 24 1 -0.3634 0.4964 0.8998 25 1 -0.3634 0.5311 -0.8798 26 1 -0.3634 -1.0275 -0.0199 27 1 3.1433 1.4275 0.0154 28 1 1.7076 1.9503 -0.8977 29 1 1.6824 1.9595 0.8821 30 1 1.2925 -0.7878 -2.0203 31 1 2.9648 -0.2824 -1.6187 32 1 3.1241 -2.6681 -1.2817 33 1 1.4430 -2.7760 -0.6602 34 1 3.9112 -1.5737 0.7094 35 1 2.7120 -2.7144 1.3897 36 1 3.6928 0.5235 1.5286 37 1 2.1889 1.0403 2.3284 38 1 1.3804 -0.1479 4.3280 39 1 2.0406 -1.3624 6.3641 40 1 5.3964 -4.6678 9.5688 41 1 5.8036 -2.3104 4.5673 42 1 5.1298 -1.1028 2.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264555720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = 0.005190 kcal Electronic energy + Delta-G solvation = -21260.415280 eV Core-core repulsion = 18205.941737 eV Total energy + Delta-G solvation = -3054.473544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99214 -38.78859 -36.50992 -32.84081 -32.41069 -32.03962 -30.11371 -28.81178 -27.51893 -25.57215 -25.23931 -24.07239 -22.00194 -21.24947 -20.28788 -18.65855 -17.93065 -16.87725 -15.93440 -15.78528 -14.91943 -14.63537 -14.50658 -14.13619 -13.61185 -13.55711 -13.44393 -13.18586 -12.80979 -12.74429 -12.57351 -12.32593 -11.99876 -11.77657 -11.68182 -11.53088 -11.26316 -11.11010 -10.93746 -10.75435 -10.68615 -10.58322 -10.48658 -10.41997 -10.35105 -9.29035 -8.81012 -8.14610 -8.10784 -7.12393 -6.42762 -4.01425 2.27542 2.34034 3.13098 3.14655 3.20163 3.98163 4.03068 4.49401 4.63975 4.70046 4.84181 5.11298 5.13342 5.19321 5.28081 5.33195 5.40643 5.45755 5.48882 5.58778 5.65911 5.69467 5.74692 5.76340 5.85048 5.91799 5.94090 6.00589 6.06933 6.15049 6.19897 6.26590 6.34767 6.47885 6.76197 6.95399 7.05276 7.20436 7.24699 7.35126 7.46225 7.49274 7.88305 8.02678 9.03152 9.74447 10.75551 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.003703 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.673788 B = 7558.666924 C = 7959.858801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.091 3.909 3 C -0.164 4.164 4 C -0.133 4.133 5 C -0.131 4.131 6 C 0.048 3.952 7 N -0.514 5.514 8 C 0.108 3.892 9 C -0.179 4.179 10 C -0.052 4.052 11 C -0.194 4.194 12 C 0.155 3.845 13 O -0.180 6.180 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.234 4.234 23 C -0.066 4.066 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.269 0.731 41 H 0.125 0.875 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 7.343 -17.944 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.001 3.999 3 C -0.222 4.222 4 C -0.171 4.171 5 C -0.169 4.169 6 C -0.079 4.079 7 N -0.238 5.238 8 C -0.019 4.019 9 C -0.180 4.180 10 C -0.071 4.071 11 C -0.214 4.214 12 C 0.101 3.899 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.254 4.254 23 C -0.084 4.084 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.514 7.023 -17.192 19.373 hybrid contribution 1.616 -0.212 -0.454 1.692 sum -3.898 6.811 -17.646 19.312 Atomic orbital electron populations 1.21722 0.93662 1.01921 1.00979 1.21757 0.95956 0.92617 0.89549 1.22384 1.01180 0.96431 1.02193 1.22922 1.00901 0.95907 0.97369 1.22756 1.01405 0.96545 0.96177 1.22980 0.95316 0.94821 0.94793 1.63704 1.36439 1.08618 1.15072 1.21044 0.95342 0.94215 0.91311 1.19140 0.95843 1.07233 0.95810 1.20438 0.97655 0.96995 0.92010 1.20220 0.95791 1.05655 0.99698 1.19392 0.92546 0.91235 0.86687 1.83981 1.37846 1.56842 1.29642 1.21363 0.94297 1.26487 1.04576 0.89095 1.25281 0.99586 0.96939 0.94742 1.70048 1.36549 1.37652 1.05602 0.85659 0.80122 0.79032 0.78680 1.19149 1.20169 1.20145 1.21107 1.01732 1.07615 0.94921 1.20586 0.95190 0.96229 0.96434 0.92435 0.93091 0.92363 0.92395 0.92501 0.91661 0.91087 0.91675 0.91192 0.90855 0.93748 0.90112 0.94797 0.90660 0.87140 0.86645 0.92115 0.85746 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.71 37.15 0.32 -0.92 16 2 C 0.09 0.97 1.16 -130.62 -0.15 0.82 16 3 C -0.16 -1.57 7.16 37.16 0.27 -1.31 16 4 C -0.13 -1.27 6.02 -24.75 -0.15 -1.42 16 5 C -0.13 -1.36 7.10 -24.43 -0.17 -1.54 16 6 C 0.05 0.63 5.59 -2.30 -0.01 0.62 16 7 N -0.51 -6.82 4.83 -217.18 -1.05 -7.87 16 8 C 0.11 1.50 3.82 -4.98 -0.02 1.48 16 9 C -0.18 -3.10 4.88 -104.58 -0.51 -3.61 16 10 C -0.05 -0.96 9.71 -39.61 -0.38 -1.35 16 11 C -0.19 -4.21 9.99 -39.40 -0.39 -4.60 16 12 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 13 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 14 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 18 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 23 C -0.07 -1.21 8.82 -39.61 -0.35 -1.56 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 30 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 31 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.59 6.92 -51.93 -0.36 0.23 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.46 6.50 -51.93 -0.34 0.12 16 37 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 2.76 5.64 -52.48 -0.30 2.46 16 42 H 0.10 1.62 7.59 -52.49 -0.40 1.22 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -30.16 331.59 -8.74 -38.90 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.44 Total: 3.44 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.98 Total: -25.14 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: -0.29 Total: -32.68 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.16 -8.74 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264555720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.908 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds