Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 110.01023 * 2 1 4 4 C 1.54315 * 109.88884 * 238.88359 * 2 1 3 5 5 C 1.55435 * 103.04753 * 262.87413 * 4 2 1 6 6 C 1.54907 * 101.51852 * 324.36830 * 5 4 2 7 7 N 1.47444 * 109.89084 * 121.11387 * 2 1 3 8 8 C 1.46904 * 110.99913 * 242.66368 * 7 2 1 9 9 C 1.50697 * 109.47039 * 175.89359 * 8 7 2 10 10 C 1.38294 * 119.93564 * 274.43854 * 9 8 7 11 11 C 1.38098 * 120.07369 * 179.72313 * 10 9 8 12 12 C 1.38880 * 119.92459 * 0.57433 * 11 10 9 13 13 O 1.35758 * 120.06841 * 179.68350 * 12 11 10 14 14 C 1.34825 * 117.00102 * 174.80709 * 13 12 11 15 15 H 1.07997 * 120.00117 * 4.90527 * 14 13 12 16 16 C 1.38659 * 120.00083 * 184.89518 * 14 13 12 17 17 N 1.31558 * 119.99866 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00157 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47041 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46694 * 120.00487 * 18 16 14 21 21 H 1.48495 * 109.47146 * 240.00874 * 18 16 14 22 22 C 1.38873 * 119.86585 * 359.69880 * 12 11 10 23 23 C 1.38101 * 119.93204 * 0.02562 * 22 12 11 24 24 H 1.08998 * 109.47439 * 298.88404 * 1 2 3 25 25 H 1.09003 * 109.47397 * 58.88533 * 1 2 3 26 26 H 1.09004 * 109.47231 * 178.88983 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.13877 * 3 2 1 28 28 H 1.09004 * 109.46541 * 299.13690 * 3 2 1 29 29 H 1.08998 * 109.47169 * 59.13187 * 3 2 1 30 30 H 1.08994 * 110.70684 * 21.25825 * 4 2 1 31 31 H 1.09006 * 110.70689 * 144.31809 * 4 2 1 32 32 H 1.08998 * 111.10958 * 206.29670 * 5 4 2 33 33 H 1.08999 * 110.99808 * 82.38840 * 5 4 2 34 34 H 1.09001 * 110.37027 * 278.17062 * 6 5 4 35 35 H 1.09002 * 110.36859 * 155.94846 * 6 5 4 36 36 H 1.09000 * 109.47633 * 295.89676 * 8 7 2 37 37 H 1.09003 * 109.46967 * 55.90140 * 8 7 2 38 38 H 1.08006 * 119.96830 * 359.97438 * 10 9 8 39 39 H 1.08002 * 120.04008 * 180.26940 * 11 10 9 40 40 H 0.96995 * 120.00188 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.03903 * 179.97438 * 22 12 11 42 42 H 1.07994 * 119.97178 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0535 1.4377 0.0000 4 6 2.0549 -0.7499 -1.2423 5 6 2.3509 -2.1737 -0.6936 6 6 2.8585 -1.8554 0.7349 7 7 2.0316 -0.7165 1.1870 8 6 2.8029 0.1815 2.0569 9 6 3.2125 -0.5574 3.3048 10 6 2.3479 -0.6250 4.3820 11 6 2.7180 -1.3063 5.5248 12 6 3.9648 -1.9138 5.5960 13 8 4.3342 -2.5788 6.7204 14 6 5.5111 -3.2358 6.6843 15 1 6.1497 -3.1524 5.8174 16 6 5.9015 -4.0183 7.7603 17 7 5.1235 -4.1201 8.8163 18 14 7.5317 -4.9291 7.7101 19 1 8.2141 -4.6517 6.4206 20 1 8.3895 -4.4708 8.8323 21 1 7.2876 -6.3883 7.8374 22 6 4.8331 -1.8394 4.5148 23 6 4.4549 -1.1615 3.3726 24 1 -0.3634 0.4964 0.8998 25 1 -0.3634 0.5311 -0.8798 26 1 -0.3634 -1.0275 -0.0199 27 1 3.1433 1.4275 0.0154 28 1 1.7076 1.9503 -0.8977 29 1 1.6824 1.9595 0.8821 30 1 1.2925 -0.7878 -2.0203 31 1 2.9648 -0.2824 -1.6187 32 1 3.1241 -2.6681 -1.2817 33 1 1.4430 -2.7760 -0.6602 34 1 3.9112 -1.5737 0.7094 35 1 2.7120 -2.7144 1.3897 36 1 3.6928 0.5235 1.5286 37 1 2.1889 1.0403 2.3284 38 1 1.3804 -0.1479 4.3280 39 1 2.0406 -1.3624 6.3641 40 1 5.3964 -4.6678 9.5688 41 1 5.8036 -2.3104 4.5673 42 1 5.1298 -1.1028 2.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264555720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = -18.054934 kcal Electronic energy + Delta-G solvation = -21261.198426 eV Core-core repulsion = 18205.941737 eV Total energy + Delta-G solvation = -3055.256689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13841 -40.38573 -38.21748 -34.47233 -33.62703 -33.25602 -31.77322 -30.24096 -28.30494 -27.47491 -26.18985 -25.35644 -23.64777 -22.43486 -21.66837 -19.82919 -19.56891 -18.76714 -17.00173 -16.74326 -16.42878 -16.26075 -15.84405 -15.49655 -15.47270 -15.09955 -14.46175 -14.36294 -14.13027 -14.04888 -13.80157 -13.50024 -13.36332 -13.08558 -12.91129 -12.65579 -12.45890 -12.36654 -12.21544 -12.11463 -12.00633 -11.85228 -11.69886 -11.46576 -11.37147 -11.15288 -10.79373 -9.76418 -9.17025 -8.86752 -8.47332 -6.15478 0.61041 0.69174 1.34275 1.42815 1.52787 2.17350 2.76329 3.05047 3.30034 3.53034 3.71320 3.80543 3.99167 4.05594 4.12909 4.22377 4.31259 4.36290 4.44914 4.54440 4.62214 4.68061 4.73650 4.79218 4.79957 4.94264 4.98156 5.02255 5.08303 5.11533 5.14584 5.15018 5.23150 5.27050 5.32017 5.37137 5.55335 5.59890 5.71714 5.82294 6.03088 6.20800 6.21532 6.34390 6.97445 7.79054 8.76364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032525 B = 0.003703 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.673788 B = 7558.666924 C = 7959.858801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.087 3.913 3 C -0.162 4.162 4 C -0.127 4.127 5 C -0.126 4.126 6 C 0.044 3.956 7 N -0.528 5.528 8 C 0.112 3.888 9 C -0.153 4.153 10 C -0.048 4.048 11 C -0.205 4.205 12 C 0.113 3.887 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.252 1.252 20 H -0.267 1.267 21 H -0.268 1.268 22 C -0.242 4.242 23 C -0.062 4.062 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 8.735 -21.513 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 C -0.220 4.220 4 C -0.165 4.165 5 C -0.164 4.164 6 C -0.084 4.084 7 N -0.253 5.253 8 C -0.015 4.015 9 C -0.154 4.154 10 C -0.066 4.066 11 C -0.225 4.225 12 C 0.063 3.937 13 O -0.141 6.141 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.261 4.261 23 C -0.080 4.080 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.394 8.453 -20.818 23.107 hybrid contribution 1.365 -0.454 0.393 1.491 sum -4.029 7.999 -20.425 22.302 Atomic orbital electron populations 1.21717 0.93170 1.01567 1.01642 1.21882 0.96265 0.93232 0.88827 1.22358 1.00997 0.95549 1.03070 1.22915 1.01714 0.94734 0.97141 1.22728 1.01596 0.97476 0.94618 1.22956 0.95443 0.93985 0.95994 1.63616 1.36161 1.08867 1.16649 1.21057 0.96518 0.94126 0.89824 1.19660 0.94578 1.04439 0.96726 1.20796 0.99047 0.95902 0.90894 1.20456 0.94983 1.06039 1.00982 1.19915 0.94321 0.92458 0.86991 1.83943 1.38767 1.59244 1.32120 1.21855 0.94724 1.27031 1.05344 0.88210 1.26598 1.03898 0.97616 0.93962 1.70192 1.39320 1.39652 1.06821 0.84526 0.74752 0.77454 0.79431 1.17509 1.19242 1.19305 1.21196 1.01163 1.08219 0.95503 1.20895 0.96234 0.94986 0.95914 0.93153 0.91034 0.93295 0.92566 0.90748 0.91833 0.89505 0.90899 0.89930 0.91107 0.93784 0.92849 0.93365 0.89112 0.84053 0.87098 0.91843 0.86557 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 8.71 71.98 0.63 -1.42 16 2 C 0.09 1.53 1.16 3.87 0.00 1.54 16 3 C -0.16 -2.42 7.16 71.98 0.52 -1.90 16 4 C -0.13 -1.92 6.02 31.88 0.19 -1.73 16 5 C -0.13 -2.28 7.10 32.08 0.23 -2.05 16 6 C 0.04 1.05 5.59 86.77 0.49 1.54 16 7 N -0.53 -12.42 4.83 -841.02 -4.06 -16.48 16 8 C 0.11 2.72 3.82 85.56 0.33 3.04 16 9 C -0.15 -4.95 4.88 -19.83 -0.10 -5.04 16 10 C -0.05 -1.70 9.71 22.25 0.22 -1.48 16 11 C -0.21 -9.12 9.99 22.39 0.22 -8.90 16 12 C 0.11 5.83 6.65 22.58 0.15 5.98 16 13 O -0.23 -14.47 9.76 -22.78 -0.22 -14.69 16 14 C -0.41 -24.61 9.49 67.92 0.64 -23.96 16 15 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 16 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 17 N -0.92 -57.49 13.67 21.61 0.30 -57.19 16 18 Si 1.02 43.52 29.55 68.60 2.03 45.54 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C -0.24 -10.83 9.17 22.39 0.21 -10.62 16 23 C -0.06 -2.19 8.82 22.25 0.20 -1.99 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.87 6.71 -2.39 -0.02 0.85 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.98 6.59 -2.39 -0.02 0.96 16 30 H 0.09 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.07 1.02 7.85 -2.38 -0.02 1.00 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.05 6.92 -2.39 -0.02 1.03 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.08 6.50 -2.39 -0.02 1.07 16 37 H 0.09 2.00 6.46 -2.39 -0.02 1.98 16 38 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 42 H 0.13 3.85 7.59 -2.91 -0.02 3.83 16 Total: -1.00 -69.97 331.59 3.42 -66.55 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.00 Total: 24.17 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 4.38 Total: -47.91 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -3.76 Total: -73.67 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.22 Total: -14.69 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.97 3.42 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264555720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.496 kcal (2) G-P(sol) polarization free energy of solvation -69.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds