Wall clock time and date at job start Mon Mar 30 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47546 * 59.99644 * 3 2 1 5 5 C 1.53002 * 109.46833 * 299.99770 * 3 2 1 6 6 N 1.46496 * 109.47300 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99741 * 359.97438 * 6 3 2 8 8 C 1.34780 * 120.00308 * 180.02562 * 6 3 2 9 9 O 1.21544 * 120.00000 * 4.17214 * 8 6 3 10 10 C 1.47886 * 119.99929 * 184.17585 * 8 6 3 11 11 C 1.39919 * 120.02636 * 141.72073 * 10 8 6 12 12 C 1.38323 * 120.36150 * 180.02562 * 11 10 8 13 13 C 1.37762 * 120.41048 * 0.02562 * 12 11 10 14 14 C 1.40750 * 120.03729 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.17339 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00077 * 149.36152 * 15 14 13 17 17 C 1.39933 * 120.00161 * 329.36191 * 15 14 13 18 18 N 1.30827 * 120.00105 * 344.30856 * 17 15 14 19 19 Si 1.86804 * 120.00254 * 164.31623 * 17 15 14 20 20 H 1.48493 * 109.47071 * 84.98398 * 19 17 15 21 21 H 1.48499 * 109.46921 * 204.98730 * 19 17 15 22 22 H 1.48498 * 109.46843 * 324.98379 * 19 17 15 23 23 C 1.38991 * 120.02469 * 321.74331 * 10 8 6 24 24 H 1.09004 * 109.47249 * 59.99936 * 1 2 3 25 25 H 1.08993 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47387 * 300.00485 * 1 2 3 27 27 H 1.08997 * 109.46996 * 239.99732 * 2 1 3 28 28 H 1.08999 * 109.46848 * 119.99828 * 2 1 3 29 29 H 1.08993 * 109.47018 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47098 * 300.00363 * 4 3 2 31 31 H 1.09004 * 109.46503 * 60.00068 * 4 3 2 32 32 H 1.08999 * 109.47630 * 299.99923 * 5 3 2 33 33 H 1.09007 * 109.47194 * 60.00318 * 5 3 2 34 34 H 1.09008 * 109.47170 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.47743 * 266.74475 * 7 6 3 36 36 H 1.09000 * 109.47084 * 26.74511 * 7 6 3 37 37 H 1.09005 * 109.47128 * 146.74053 * 7 6 3 38 38 H 1.08001 * 119.81800 * 0.02562 * 11 10 8 39 39 H 1.08001 * 119.79523 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.97697 * 180.02562 * 13 12 11 41 41 H 0.97002 * 120.00125 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.20438 * 359.70145 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2375 0.1738 -0.0005 8 6 4.1789 2.6098 -0.0002 9 8 3.5736 3.6610 0.0773 10 6 5.6547 2.6115 -0.0941 11 6 6.3070 3.5904 -0.8518 12 6 7.6870 3.5983 -0.9448 13 6 8.4353 2.6425 -0.2933 14 6 7.7968 1.6492 0.4727 15 6 8.5622 0.6670 1.1433 16 1 8.2029 0.2409 2.0684 17 6 9.7851 0.2471 0.6081 18 7 10.0812 0.5168 -0.6374 19 14 10.9948 -0.6987 1.6719 20 1 10.6505 -2.1430 1.6485 21 1 12.3703 -0.5090 1.1455 22 1 10.9251 -0.1958 3.0674 23 6 6.3950 1.6405 0.5699 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8929 3.1916 1.2489 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.8933 1.6499 -2.1393 33 1 0.4399 2.1637 -1.2493 34 1 1.8937 3.1913 -1.2496 35 1 4.4702 -0.1114 1.0254 36 1 3.6242 -0.5998 -0.4625 37 1 5.1631 0.2887 -0.5646 38 1 5.7297 4.3440 -1.3668 39 1 8.1810 4.3584 -1.5318 40 1 9.5125 2.6555 -0.3703 41 1 10.9287 0.2254 -1.0084 42 1 5.8960 0.8856 1.1595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265575171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:47 Heat of formation + Delta-G solvation = -17.094262 kcal Electronic energy + Delta-G solvation = -21789.941685 eV Core-core repulsion = 18734.726654 eV Total energy + Delta-G solvation = -3055.215031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10594 -37.59198 -36.46986 -33.84649 -33.42366 -30.41597 -29.93598 -29.18014 -27.14055 -26.25852 -25.30632 -24.34237 -22.40278 -20.79099 -19.80408 -18.25752 -17.12733 -16.21227 -15.78408 -15.40142 -15.15515 -14.80823 -14.52402 -14.09437 -13.51676 -13.19601 -13.06469 -12.82653 -12.75040 -12.43106 -12.25636 -12.06596 -11.74266 -11.62009 -11.58603 -11.37509 -11.19389 -11.11256 -10.95812 -10.72062 -10.69117 -10.57873 -10.51795 -10.09071 -9.52408 -9.24005 -8.83611 -8.20194 -7.58571 -7.46925 -6.80683 -4.44821 2.31057 2.73918 3.04814 3.07114 3.13219 3.39436 3.70677 3.90973 4.58695 4.70109 4.90796 5.11810 5.31433 5.35023 5.44848 5.51013 5.53043 5.63263 5.81865 5.84063 5.88082 5.91247 5.97272 6.03545 6.12926 6.14022 6.20302 6.30132 6.38909 6.50151 6.57905 6.76416 6.89712 7.00867 7.06427 7.17172 7.36978 7.64102 7.80701 7.91267 7.98655 8.09960 8.49808 8.79449 8.80813 8.85778 10.16870 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.004784 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.282383 B = 5852.037032 C = 6601.128735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.175 3.825 4 C -0.164 4.164 5 C -0.162 4.162 6 N -0.609 5.609 7 C 0.069 3.931 8 C 0.570 3.430 9 O -0.551 6.551 10 C -0.115 4.115 11 C -0.177 4.177 12 C -0.115 4.115 13 C -0.135 4.135 14 C 0.104 3.896 15 C -0.470 4.470 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.801 5.801 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.191 4.191 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.281 0.719 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 -3.300 0.110 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.090 3.910 4 C -0.222 4.222 5 C -0.220 4.220 6 N -0.343 5.343 7 C -0.074 4.074 8 C 0.362 3.638 9 O -0.430 6.430 10 C -0.118 4.118 11 C -0.197 4.197 12 C -0.133 4.133 13 C -0.154 4.154 14 C 0.102 3.898 15 C -0.500 4.500 16 H 0.096 0.904 17 C -0.139 4.139 18 N -0.426 5.426 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.211 4.211 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.255 -2.809 -0.029 11.601 hybrid contribution 0.755 -0.637 0.357 1.050 sum -10.501 -3.445 0.328 11.056 Atomic orbital electron populations 1.21876 0.95102 1.01629 1.02332 1.21867 0.96373 0.95527 1.02528 1.20297 0.79630 0.95131 0.95900 1.22289 1.00406 1.03068 0.96466 1.22246 1.00573 1.02620 0.96602 1.47916 1.05300 1.06692 1.74377 1.22268 0.98042 0.85107 1.01962 1.18869 0.88125 0.82491 0.74346 1.90594 1.70272 1.31553 1.50604 1.19326 0.90196 0.98990 1.03278 1.20370 0.94045 1.00094 1.05228 1.20655 0.93374 0.98916 1.00373 1.21414 0.99440 0.94072 1.00493 1.17525 0.90455 0.91234 0.90567 1.19461 1.02683 1.19847 1.08023 0.90411 1.25832 0.98210 0.95254 0.94597 1.69786 1.22771 1.37606 1.12483 0.86361 0.79316 0.80042 0.81218 1.19451 1.20207 1.18565 1.21555 0.94185 0.99691 1.05638 0.92245 0.92661 0.92229 0.91200 0.91285 0.90008 0.92164 0.93012 0.92907 0.91970 0.90558 0.92662 0.91686 0.88960 0.88565 0.88677 0.86742 0.90843 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.21 37.16 0.34 -1.04 16 2 C -0.13 -1.40 3.71 -26.73 -0.10 -1.50 16 3 C 0.17 2.49 0.82 -131.82 -0.11 2.38 16 4 C -0.16 -2.34 8.05 37.16 0.30 -2.05 16 5 C -0.16 -2.28 8.05 37.16 0.30 -1.99 16 6 N -0.61 -10.45 2.82 -167.69 -0.47 -10.92 16 7 C 0.07 1.07 8.09 59.85 0.48 1.55 16 8 C 0.57 11.89 6.77 -12.31 -0.08 11.80 16 9 O -0.55 -12.37 13.12 5.33 0.07 -12.30 16 10 C -0.11 -2.61 5.25 -105.04 -0.55 -3.16 16 11 C -0.18 -4.08 9.63 -38.92 -0.37 -4.45 16 12 C -0.11 -2.64 10.01 -39.72 -0.40 -3.04 16 13 C -0.13 -3.36 8.65 -38.81 -0.34 -3.70 16 14 C 0.10 2.64 5.50 -106.87 -0.59 2.05 16 15 C -0.47 -11.83 9.03 -37.73 -0.34 -12.17 16 16 H 0.08 1.88 7.89 -52.48 -0.41 1.46 16 17 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 18 N -0.80 -19.94 11.25 55.55 0.63 -19.32 16 19 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.19 -4.40 7.27 -38.44 -0.28 -4.68 16 24 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 27 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 28 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 29 H 0.08 1.40 6.03 -51.93 -0.31 1.09 16 30 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.08 1.28 6.31 -51.92 -0.33 0.95 16 35 H 0.05 0.83 6.93 -51.93 -0.36 0.47 16 36 H 0.06 0.82 5.61 -51.93 -0.29 0.53 16 37 H 0.09 1.66 5.73 -51.93 -0.30 1.36 16 38 H 0.10 2.12 8.04 -52.49 -0.42 1.70 16 39 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.11 2.93 6.54 -52.49 -0.34 2.59 16 41 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 42 H 0.11 2.29 5.26 -52.49 -0.28 2.01 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -27.54 322.78 -7.73 -35.27 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.97 Total: 7.59 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.82 Total: -18.19 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.15 Total: -30.23 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.54 -7.73 -35.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265575171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.179 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds