Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47546 * 59.99644 * 3 2 1 5 5 C 1.53002 * 109.46833 * 299.99770 * 3 2 1 6 6 N 1.46496 * 109.47300 * 180.02562 * 3 2 1 7 7 C 1.46503 * 119.99741 * 359.97438 * 6 3 2 8 8 C 1.34780 * 120.00308 * 180.02562 * 6 3 2 9 9 O 1.21544 * 120.00000 * 4.17214 * 8 6 3 10 10 C 1.47886 * 119.99929 * 184.17585 * 8 6 3 11 11 C 1.39919 * 120.02636 * 141.72073 * 10 8 6 12 12 C 1.38323 * 120.36150 * 180.02562 * 11 10 8 13 13 C 1.37762 * 120.41048 * 0.02562 * 12 11 10 14 14 C 1.40750 * 120.03729 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.17339 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00077 * 149.36152 * 15 14 13 17 17 C 1.39933 * 120.00161 * 329.36191 * 15 14 13 18 18 N 1.30827 * 120.00105 * 344.30856 * 17 15 14 19 19 Si 1.86804 * 120.00254 * 164.31623 * 17 15 14 20 20 H 1.48493 * 109.47071 * 84.98398 * 19 17 15 21 21 H 1.48499 * 109.46921 * 204.98730 * 19 17 15 22 22 H 1.48498 * 109.46843 * 324.98379 * 19 17 15 23 23 C 1.38991 * 120.02469 * 321.74331 * 10 8 6 24 24 H 1.09004 * 109.47249 * 59.99936 * 1 2 3 25 25 H 1.08993 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47387 * 300.00485 * 1 2 3 27 27 H 1.08997 * 109.46996 * 239.99732 * 2 1 3 28 28 H 1.08999 * 109.46848 * 119.99828 * 2 1 3 29 29 H 1.08993 * 109.47018 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47098 * 300.00363 * 4 3 2 31 31 H 1.09004 * 109.46503 * 60.00068 * 4 3 2 32 32 H 1.08999 * 109.47630 * 299.99923 * 5 3 2 33 33 H 1.09007 * 109.47194 * 60.00318 * 5 3 2 34 34 H 1.09008 * 109.47170 * 180.02562 * 5 3 2 35 35 H 1.08995 * 109.47743 * 266.74475 * 7 6 3 36 36 H 1.09000 * 109.47084 * 26.74511 * 7 6 3 37 37 H 1.09005 * 109.47128 * 146.74053 * 7 6 3 38 38 H 1.08001 * 119.81800 * 0.02562 * 11 10 8 39 39 H 1.08001 * 119.79523 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.97697 * 180.02562 * 13 12 11 41 41 H 0.97002 * 120.00125 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.20438 * 359.70145 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5050 1.4426 -0.0006 7 6 4.2375 0.1738 -0.0005 8 6 4.1789 2.6098 -0.0002 9 8 3.5736 3.6610 0.0773 10 6 5.6547 2.6115 -0.0941 11 6 6.3070 3.5904 -0.8518 12 6 7.6870 3.5983 -0.9448 13 6 8.4353 2.6425 -0.2933 14 6 7.7968 1.6492 0.4727 15 6 8.5622 0.6670 1.1433 16 1 8.2029 0.2409 2.0684 17 6 9.7851 0.2471 0.6081 18 7 10.0812 0.5168 -0.6374 19 14 10.9948 -0.6987 1.6719 20 1 10.6505 -2.1430 1.6485 21 1 12.3703 -0.5090 1.1455 22 1 10.9251 -0.1958 3.0674 23 6 6.3950 1.6405 0.5699 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8929 3.1916 1.2489 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.8933 1.6499 -2.1393 33 1 0.4399 2.1637 -1.2493 34 1 1.8937 3.1913 -1.2496 35 1 4.4702 -0.1114 1.0254 36 1 3.6242 -0.5998 -0.4625 37 1 5.1631 0.2887 -0.5646 38 1 5.7297 4.3440 -1.3668 39 1 8.1810 4.3584 -1.5318 40 1 9.5125 2.6555 -0.3703 41 1 10.9287 0.2254 -1.0084 42 1 5.8960 0.8856 1.1595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265575171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -30.562637 kcal Electronic energy + Delta-G solvation = -21790.525718 eV Core-core repulsion = 18734.726654 eV Total energy + Delta-G solvation = -3055.799064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56577 -39.23814 -37.97009 -35.55444 -34.88970 -31.82496 -31.65994 -30.64117 -28.27266 -27.63195 -27.12223 -25.44242 -23.98428 -22.58530 -21.34197 -19.64669 -18.77815 -17.60823 -17.34308 -17.07527 -16.59242 -16.47101 -15.66107 -15.58930 -15.04562 -14.68608 -14.48664 -14.29313 -14.05299 -13.75360 -13.61820 -13.48126 -13.11650 -12.98931 -12.85059 -12.77567 -12.62243 -12.49561 -12.36574 -12.23748 -12.18463 -11.88579 -11.61406 -11.51914 -11.33608 -11.04123 -10.43835 -9.62269 -9.42059 -9.33139 -8.62142 -6.36349 0.50998 0.94070 1.42397 1.48789 1.55895 1.93405 2.10556 2.24544 2.76524 3.58448 3.65511 3.93238 3.98719 4.09556 4.21832 4.36451 4.43276 4.49766 4.54820 4.63939 4.67870 4.78652 4.80685 4.94732 4.97287 4.97826 5.00299 5.03025 5.11655 5.12678 5.16035 5.21122 5.32781 5.46863 5.49016 5.53991 5.76427 5.84525 5.97715 6.03605 6.21359 6.44474 6.61027 6.91971 6.93937 7.25474 8.37424 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.004784 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.282383 B = 5852.037032 C = 6601.128735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.165 3.835 4 C -0.160 4.160 5 C -0.158 4.158 6 N -0.601 5.601 7 C 0.068 3.932 8 C 0.564 3.436 9 O -0.573 6.573 10 C -0.121 4.121 11 C -0.190 4.190 12 C -0.113 4.113 13 C -0.158 4.158 14 C 0.079 3.921 15 C -0.498 4.498 16 H 0.080 0.920 17 C 0.040 3.960 18 N -0.830 5.830 19 Si 0.978 3.022 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.261 1.261 23 C -0.188 4.188 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.288 0.712 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 -5.101 0.537 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.082 3.918 4 C -0.218 4.218 5 C -0.216 4.216 6 N -0.333 5.333 7 C -0.074 4.074 8 C 0.355 3.645 9 O -0.454 6.454 10 C -0.124 4.124 11 C -0.210 4.210 12 C -0.131 4.131 13 C -0.178 4.178 14 C 0.077 3.923 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.174 4.174 18 N -0.456 5.456 19 Si 0.799 3.201 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.207 4.207 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.612 -4.629 0.390 13.440 hybrid contribution 1.077 -0.059 0.181 1.094 sum -11.535 -4.688 0.571 12.464 Atomic orbital electron populations 1.21869 0.93145 1.02929 1.02688 1.21857 0.97972 0.92859 1.03075 1.20652 0.77599 0.97574 0.95983 1.22235 1.02185 1.00914 0.96443 1.22206 1.02356 1.00524 0.96530 1.48004 1.06817 1.05956 1.72522 1.22313 0.97572 0.85233 1.02311 1.18656 0.87424 0.83449 0.74970 1.90589 1.70354 1.32583 1.51905 1.19648 0.91798 0.98473 1.02505 1.20575 0.94212 1.00592 1.05618 1.20869 0.93497 0.98841 0.99908 1.21385 0.98959 0.95268 1.02204 1.17872 0.91581 0.91693 0.91176 1.19718 1.04033 1.20582 1.08479 0.90166 1.26638 0.99353 0.95885 0.95553 1.69843 1.23503 1.38378 1.13905 0.85273 0.76894 0.78825 0.79097 1.18466 1.19535 1.18516 1.21689 0.93555 1.00017 1.05466 0.91838 0.90974 0.91907 0.90589 0.90781 0.93320 0.89303 0.93032 0.92825 0.89107 0.93781 0.91971 0.88154 0.91626 0.87882 0.86416 0.88074 0.90169 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.21 71.98 0.66 -1.46 16 2 C -0.12 -2.28 3.71 30.59 0.11 -2.16 16 3 C 0.17 4.39 0.82 3.61 0.00 4.40 16 4 C -0.16 -4.32 8.05 71.98 0.58 -3.74 16 5 C -0.16 -4.21 8.05 71.98 0.58 -3.63 16 6 N -0.60 -20.06 2.82 -802.72 -2.27 -22.33 16 7 C 0.07 2.01 8.09 127.77 1.03 3.05 16 8 C 0.56 23.71 6.77 86.80 0.59 24.30 16 9 O -0.57 -26.18 13.12 -3.86 -0.05 -26.23 16 10 C -0.12 -5.60 5.25 -20.14 -0.11 -5.71 16 11 C -0.19 -8.90 9.63 22.70 0.22 -8.68 16 12 C -0.11 -5.30 10.01 22.18 0.22 -5.08 16 13 C -0.16 -8.16 8.65 22.77 0.20 -7.96 16 14 C 0.08 4.09 5.50 -21.32 -0.12 3.97 16 15 C -0.50 -25.45 9.03 23.47 0.21 -25.24 16 16 H 0.08 3.91 7.89 -2.91 -0.02 3.89 16 17 C 0.04 1.95 5.13 85.25 0.44 2.38 16 18 N -0.83 -41.86 11.25 21.82 0.25 -41.62 16 19 Si 0.98 36.64 29.59 68.60 2.03 38.67 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 C -0.19 -8.80 7.27 23.01 0.17 -8.63 16 24 H 0.06 0.87 6.43 -2.38 -0.02 0.85 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 27 H 0.08 1.37 6.90 -2.39 -0.02 1.35 16 28 H 0.07 1.36 7.77 -2.39 -0.02 1.34 16 29 H 0.05 1.66 6.03 -2.39 -0.01 1.64 16 30 H 0.09 1.84 6.43 -2.39 -0.02 1.83 16 31 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.85 6.43 -2.38 -0.02 1.84 16 34 H 0.04 1.47 6.31 -2.38 -0.02 1.45 16 35 H 0.06 1.77 6.93 -2.39 -0.02 1.76 16 36 H 0.10 2.26 5.61 -2.39 -0.01 2.25 16 37 H 0.07 2.34 5.73 -2.38 -0.01 2.33 16 38 H 0.10 4.61 8.04 -2.91 -0.02 4.59 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.38 6.54 -2.91 -0.02 5.36 16 41 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 42 H 0.12 5.23 5.26 -2.91 -0.02 5.21 16 Total: -1.00 -60.80 322.78 5.77 -55.03 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 1.02 Total: 30.66 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 4.79 Total: -34.18 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -2.02 Total: -63.95 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -60.80 5.77 -55.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265575171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.468 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds