Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99762 * 2 1 4 4 C 1.50701 * 109.46899 * 269.99739 * 3 2 1 5 5 H 1.08001 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99987 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99997 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47595 * 89.99726 * 8 6 4 10 10 H 1.48507 * 109.47169 * 209.99716 * 8 6 4 11 11 H 1.48498 * 109.47022 * 329.99303 * 8 6 4 12 12 C 1.34773 * 120.00454 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00376 * 185.77621 * 12 2 1 14 14 C 1.50705 * 119.99832 * 5.78284 * 12 2 1 15 15 C 1.52998 * 109.46899 * 306.91844 * 14 12 2 16 16 C 1.53001 * 109.47087 * 66.92109 * 14 12 2 17 17 C 1.52999 * 109.46837 * 186.91820 * 14 12 2 18 18 C 1.50705 * 109.46837 * 179.97438 * 17 14 12 19 19 C 1.38237 * 119.99988 * 269.72730 * 18 17 14 20 20 C 1.38227 * 120.00189 * 179.76704 * 19 18 17 21 21 C 1.38235 * 119.99996 * 0.50306 * 20 19 18 22 22 C 1.38236 * 119.99801 * 359.75083 * 21 20 19 23 23 C 1.38230 * 120.00134 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47364 * 265.54501 * 1 2 3 25 25 H 1.08996 * 109.46995 * 25.55102 * 1 2 3 26 26 H 1.09003 * 109.46696 * 145.55152 * 1 2 3 27 27 H 1.09002 * 109.46868 * 29.99697 * 3 2 1 28 28 H 1.09001 * 109.47320 * 149.99759 * 3 2 1 29 29 H 0.97005 * 119.99733 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46891 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47136 * 59.99904 * 15 14 12 32 32 H 1.09004 * 109.47153 * 300.00120 * 15 14 12 33 33 H 1.09008 * 109.46791 * 295.19793 * 16 14 12 34 34 H 1.08992 * 109.47325 * 55.19458 * 16 14 12 35 35 H 1.08999 * 109.46859 * 175.20491 * 16 14 12 36 36 H 1.09001 * 109.47584 * 299.99602 * 17 14 12 37 37 H 1.09001 * 109.47381 * 60.00391 * 17 14 12 38 38 H 1.08001 * 119.99844 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00301 * 180.23350 * 20 19 18 40 40 H 1.07998 * 120.00181 * 179.72503 * 21 20 19 41 41 H 1.07998 * 120.00229 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00248 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9001 10 1 4.6982 4.1994 -3.4970 11 1 3.5539 2.2200 -4.3051 12 6 2.1389 -1.1671 0.0005 13 8 3.3472 -1.1697 0.1062 14 6 1.3912 -2.4690 -0.1304 15 6 0.2891 -2.5329 0.9289 16 6 0.7655 -2.5599 -1.5237 17 6 2.3601 -3.6360 0.0706 18 6 1.6123 -4.9379 -0.0597 19 6 1.0463 -5.5246 1.0567 20 6 0.3562 -6.7162 0.9365 21 6 0.2410 -7.3266 -0.2984 22 6 0.8115 -6.7426 -1.4140 23 6 1.4976 -5.5486 -1.2945 24 1 -0.3634 -0.0798 1.0245 25 1 -0.3633 0.9271 -0.4432 26 1 -0.3633 -0.8475 -0.5813 27 1 1.6083 2.0284 0.5138 28 1 3.1499 1.1386 0.5139 29 1 4.0309 4.4436 -0.8506 30 1 -0.2514 -3.4747 0.8345 31 1 -0.4011 -1.7015 0.7857 32 1 0.7349 -2.4681 1.9215 33 1 0.0131 -1.7792 -1.6356 34 1 1.5402 -2.4289 -2.2791 35 1 0.2973 -3.5363 -1.6486 36 1 3.1453 -3.5905 -0.6840 37 1 2.8059 -3.5713 1.0632 38 1 1.1403 -5.0501 2.0224 39 1 -0.0892 -7.1727 1.8080 40 1 -0.2943 -8.2599 -0.3917 41 1 0.7219 -7.2196 -2.3787 42 1 1.9437 -5.0925 -2.1660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265586162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -3.559358 kcal Electronic energy + Delta-G solvation = -21697.177829 eV Core-core repulsion = 18642.549716 eV Total energy + Delta-G solvation = -3054.628114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26432 -38.88761 -35.49819 -34.93496 -32.63686 -31.15287 -31.00857 -27.94633 -27.14160 -26.61936 -25.85919 -23.44635 -22.50758 -21.91626 -20.23653 -18.18188 -16.65154 -16.48416 -15.94205 -15.62165 -15.23795 -14.93681 -14.63064 -14.46637 -13.85717 -13.51874 -13.41337 -13.29966 -12.91996 -12.55088 -12.32932 -12.04125 -11.98367 -11.76723 -11.62636 -11.39394 -11.17317 -11.00209 -10.93759 -10.85136 -10.62511 -10.57861 -10.23987 -10.04683 -9.60499 -8.93466 -8.75468 -8.61865 -8.42871 -7.58441 -6.03444 -4.08439 1.32239 1.35316 3.29982 3.36517 3.39858 3.49232 3.71148 4.04190 4.44852 4.76975 4.82263 4.93742 4.95308 5.06058 5.14521 5.21957 5.30430 5.45645 5.47154 5.50306 5.57865 5.78079 5.83358 5.86237 5.90778 5.96552 6.02024 6.06911 6.10514 6.17963 6.31875 6.40861 6.43493 6.45508 6.51189 6.70357 6.97505 7.09982 7.47794 7.58111 7.93528 8.24945 8.47257 8.91500 9.13770 9.56863 11.04514 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.004141 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.791614 B = 6760.734724 C = 7063.052717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.517 3.483 13 O -0.544 6.544 14 C -0.073 4.073 15 C -0.170 4.170 16 C -0.149 4.149 17 C -0.059 4.059 18 C -0.066 4.066 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 -18.353 1.692 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.330 5.330 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.303 3.697 13 O -0.422 6.422 14 C -0.077 4.077 15 C -0.226 4.226 16 C -0.205 4.205 17 C -0.097 4.097 18 C -0.066 4.066 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.139 4.139 23 C -0.133 4.133 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.353 -18.137 1.798 20.486 hybrid contribution 0.134 0.437 -0.980 1.082 sum -9.219 -17.700 0.818 19.974 Atomic orbital electron populations 1.22223 0.82049 1.03075 1.00245 1.48029 1.05911 1.07696 1.71350 1.19295 0.92660 0.78161 0.97411 1.21448 1.36452 1.06295 0.92324 0.92479 1.24939 0.95374 0.96422 0.97396 1.69938 1.38409 1.14306 1.30708 0.86505 0.77683 0.78593 0.84691 1.20643 1.21079 1.19907 1.20184 0.87671 0.84845 0.77023 1.90647 1.14308 1.87158 1.50096 1.20631 0.96244 0.93336 0.97465 1.22541 0.98500 1.03671 0.97927 1.22088 1.01221 1.02413 0.94822 1.20452 0.96384 0.88931 1.03904 1.19956 0.97351 0.96074 0.93203 1.21102 0.98126 0.95638 0.98469 1.21109 0.99561 0.95862 0.97455 1.21084 1.00706 1.00062 0.93031 1.21121 0.98363 0.95919 0.98521 1.21135 0.99449 0.95443 0.97297 0.93446 0.91096 0.90729 0.95128 0.93784 0.92732 0.91808 0.89704 0.92557 0.91209 0.92082 0.91536 0.90075 0.90507 0.86119 0.86395 0.86544 0.86358 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.51 59.85 0.51 1.59 16 2 N -0.60 -12.80 2.86 -182.95 -0.52 -13.32 16 3 C 0.24 6.47 5.19 -5.19 -0.03 6.44 16 4 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.52 10.85 6.47 -10.98 -0.07 10.78 16 13 O -0.54 -13.84 15.53 5.55 0.09 -13.75 16 14 C -0.07 -1.12 0.52 -155.66 -0.08 -1.20 16 15 C -0.17 -2.15 7.40 37.16 0.27 -1.87 16 16 C -0.15 -2.06 7.85 37.16 0.29 -1.77 16 17 C -0.06 -0.86 3.78 -27.88 -0.11 -0.97 16 18 C -0.07 -0.80 4.01 -104.62 -0.42 -1.22 16 19 C -0.12 -1.27 7.90 -39.59 -0.31 -1.58 16 20 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 21 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.12 -1.31 7.77 -39.59 -0.31 -1.62 16 24 H 0.05 0.66 7.03 -51.93 -0.37 0.29 16 25 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 26 H 0.07 1.02 3.18 -51.93 -0.17 0.85 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.71 6.19 -51.93 -0.32 0.39 16 31 H 0.08 1.02 3.53 -51.93 -0.18 0.83 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.94 5.25 -51.92 -0.27 0.67 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.80 5.85 -51.93 -0.30 0.49 16 36 H 0.08 1.29 7.97 -51.93 -0.41 0.88 16 37 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.12 1.22 8.04 -52.49 -0.42 0.80 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.32 8.03 -52.48 -0.42 0.90 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -32.96 330.09 -7.77 -40.73 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.16 Total: 0.44 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.86 Total: -9.93 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.21 Total: -39.38 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.96 -7.77 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265586162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.174 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds