Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99762 * 2 1 4 4 C 1.50701 * 109.46899 * 269.99739 * 3 2 1 5 5 H 1.08001 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99987 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99997 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47595 * 89.99726 * 8 6 4 10 10 H 1.48507 * 109.47169 * 209.99716 * 8 6 4 11 11 H 1.48498 * 109.47022 * 329.99303 * 8 6 4 12 12 C 1.34773 * 120.00454 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00376 * 185.77621 * 12 2 1 14 14 C 1.50705 * 119.99832 * 5.78284 * 12 2 1 15 15 C 1.52998 * 109.46899 * 306.91844 * 14 12 2 16 16 C 1.53001 * 109.47087 * 66.92109 * 14 12 2 17 17 C 1.52999 * 109.46837 * 186.91820 * 14 12 2 18 18 C 1.50705 * 109.46837 * 179.97438 * 17 14 12 19 19 C 1.38237 * 119.99988 * 269.72730 * 18 17 14 20 20 C 1.38227 * 120.00189 * 179.76704 * 19 18 17 21 21 C 1.38235 * 119.99996 * 0.50306 * 20 19 18 22 22 C 1.38236 * 119.99801 * 359.75083 * 21 20 19 23 23 C 1.38230 * 120.00134 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47364 * 265.54501 * 1 2 3 25 25 H 1.08996 * 109.46995 * 25.55102 * 1 2 3 26 26 H 1.09003 * 109.46696 * 145.55152 * 1 2 3 27 27 H 1.09002 * 109.46868 * 29.99697 * 3 2 1 28 28 H 1.09001 * 109.47320 * 149.99759 * 3 2 1 29 29 H 0.97005 * 119.99733 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46891 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47136 * 59.99904 * 15 14 12 32 32 H 1.09004 * 109.47153 * 300.00120 * 15 14 12 33 33 H 1.09008 * 109.46791 * 295.19793 * 16 14 12 34 34 H 1.08992 * 109.47325 * 55.19458 * 16 14 12 35 35 H 1.08999 * 109.46859 * 175.20491 * 16 14 12 36 36 H 1.09001 * 109.47584 * 299.99602 * 17 14 12 37 37 H 1.09001 * 109.47381 * 60.00391 * 17 14 12 38 38 H 1.08001 * 119.99844 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00301 * 180.23350 * 20 19 18 40 40 H 1.07998 * 120.00181 * 179.72503 * 21 20 19 41 41 H 1.07998 * 120.00229 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00248 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4375 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9001 10 1 4.6982 4.1994 -3.4970 11 1 3.5539 2.2200 -4.3051 12 6 2.1389 -1.1671 0.0005 13 8 3.3472 -1.1697 0.1062 14 6 1.3912 -2.4690 -0.1304 15 6 0.2891 -2.5329 0.9289 16 6 0.7655 -2.5599 -1.5237 17 6 2.3601 -3.6360 0.0706 18 6 1.6123 -4.9379 -0.0597 19 6 1.0463 -5.5246 1.0567 20 6 0.3562 -6.7162 0.9365 21 6 0.2410 -7.3266 -0.2984 22 6 0.8115 -6.7426 -1.4140 23 6 1.4976 -5.5486 -1.2945 24 1 -0.3634 -0.0798 1.0245 25 1 -0.3633 0.9271 -0.4432 26 1 -0.3633 -0.8475 -0.5813 27 1 1.6083 2.0284 0.5138 28 1 3.1499 1.1386 0.5139 29 1 4.0309 4.4436 -0.8506 30 1 -0.2514 -3.4747 0.8345 31 1 -0.4011 -1.7015 0.7857 32 1 0.7349 -2.4681 1.9215 33 1 0.0131 -1.7792 -1.6356 34 1 1.5402 -2.4289 -2.2791 35 1 0.2973 -3.5363 -1.6486 36 1 3.1453 -3.5905 -0.6840 37 1 2.8059 -3.5713 1.0632 38 1 1.1403 -5.0501 2.0224 39 1 -0.0892 -7.1727 1.8080 40 1 -0.2943 -8.2599 -0.3917 41 1 0.7219 -7.2196 -2.3787 42 1 1.9437 -5.0925 -2.1660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265586162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -22.811619 kcal Electronic energy + Delta-G solvation = -21698.012670 eV Core-core repulsion = 18642.549716 eV Total energy + Delta-G solvation = -3055.462955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60240 -39.98450 -36.87340 -36.67980 -34.69273 -32.24584 -31.78461 -29.71876 -28.32248 -28.00459 -27.15447 -25.39369 -23.28467 -23.10184 -21.50698 -19.69120 -18.68738 -17.51067 -17.36194 -17.18729 -16.45119 -16.30242 -16.03086 -15.82355 -15.08235 -14.95944 -14.66727 -14.27192 -14.14568 -13.88465 -13.62403 -13.51435 -13.42283 -13.20609 -13.02469 -12.81344 -12.71411 -12.52543 -12.45913 -12.24154 -11.90562 -11.83374 -11.74099 -11.67983 -11.34783 -10.65556 -10.37450 -9.71275 -9.51127 -9.40035 -8.23615 -6.39135 0.50912 0.57678 1.35251 1.38448 1.48696 1.82857 2.30975 2.44840 2.96030 3.05565 3.50606 3.83236 3.85552 4.10962 4.15164 4.21681 4.25387 4.32567 4.38748 4.55102 4.63098 4.71213 4.74460 4.78929 4.82627 4.86747 4.94503 4.97939 5.04616 5.09661 5.22035 5.23875 5.25574 5.34178 5.37887 5.55278 5.66239 5.70496 5.82710 5.84251 6.04848 6.19884 6.68590 6.78966 7.26581 7.47151 8.83464 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.004141 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.791614 B = 6760.734724 C = 7063.052717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.604 5.604 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.505 3.495 13 O -0.602 6.602 14 C -0.062 4.062 15 C -0.163 4.163 16 C -0.143 4.143 17 C -0.052 4.052 18 C -0.079 4.079 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.023 0.977 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 -20.411 0.721 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.335 5.335 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.294 3.706 13 O -0.483 6.483 14 C -0.065 4.065 15 C -0.220 4.220 16 C -0.200 4.200 17 C -0.090 4.090 18 C -0.079 4.079 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.146 4.146 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.041 0.959 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.058 -20.210 0.832 23.548 hybrid contribution 0.973 1.013 -0.621 1.536 sum -11.084 -19.196 0.211 22.168 Atomic orbital electron populations 1.22568 0.78508 1.04242 1.02679 1.48047 1.08113 1.06177 1.71128 1.18771 0.91091 0.80421 0.96088 1.21708 1.36917 1.06640 0.92947 0.92748 1.25888 0.94834 0.96405 1.02096 1.70062 1.38903 1.14778 1.33114 0.85393 0.78122 0.78236 0.78926 1.18640 1.20644 1.19725 1.21328 0.87419 0.86493 0.75384 1.90606 1.17114 1.88141 1.52476 1.20599 0.96604 0.89787 0.99522 1.22520 0.97524 1.05383 0.96530 1.22073 1.00707 1.04176 0.93009 1.20300 0.96028 0.90545 1.02165 1.19709 0.98541 0.95253 0.94357 1.21212 0.98323 0.96367 0.98163 1.21412 0.98794 0.95114 0.98626 1.21461 0.99872 1.00720 0.92537 1.21388 0.97612 0.95202 0.99895 1.21204 1.00138 0.96353 0.96872 0.90568 0.91549 0.87718 0.95928 0.98623 0.92384 0.89424 0.88621 0.92934 0.90396 0.94053 0.88886 0.92595 0.91971 0.85669 0.84011 0.83897 0.84328 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.88 8.51 127.77 1.09 2.97 16 2 N -0.60 -26.49 2.86 -851.11 -2.43 -28.93 16 3 C 0.26 14.35 5.19 85.63 0.44 14.79 16 4 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.39 5.46 84.65 0.46 0.85 16 7 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 8 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.50 22.02 6.47 87.66 0.57 22.59 16 13 O -0.60 -32.72 15.53 -3.05 -0.05 -32.77 16 14 C -0.06 -1.88 0.52 -52.93 -0.03 -1.91 16 15 C -0.16 -3.78 7.40 71.98 0.53 -3.25 16 16 C -0.14 -3.79 7.85 71.98 0.57 -3.22 16 17 C -0.05 -1.57 3.78 29.85 0.11 -1.46 16 18 C -0.08 -1.83 4.01 -19.86 -0.08 -1.91 16 19 C -0.12 -2.43 7.90 22.27 0.18 -2.25 16 20 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 21 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 22 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.13 -2.70 7.77 22.27 0.17 -2.52 16 24 H 0.08 1.93 7.03 -2.39 -0.02 1.92 16 25 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 26 H 0.11 2.58 3.18 -2.39 -0.01 2.57 16 27 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.00 -0.28 7.35 -2.39 -0.02 -0.30 16 29 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 30 H 0.09 1.67 6.19 -2.39 -0.01 1.65 16 31 H 0.10 1.99 3.53 -2.39 -0.01 1.99 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.91 5.25 -2.38 -0.01 1.90 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 2.00 5.85 -2.39 -0.01 1.99 16 36 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 37 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 38 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.12 2.51 8.03 -2.91 -0.02 2.48 16 Total: -1.00 -75.44 330.09 5.76 -69.68 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.00 Total: 13.70 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.92 Total: -12.26 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.15 Total: -85.76 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -75.44 5.76 -69.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265586162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.868 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds