Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47073 * 2 1 4 4 C 1.38235 * 119.99642 * 269.72334 * 3 2 1 5 5 C 1.38237 * 119.99837 * 179.79391 * 4 3 2 6 6 C 1.38238 * 119.99949 * 0.43343 * 5 4 3 7 7 C 1.50696 * 120.00082 * 179.83333 * 6 5 4 8 8 H 1.09004 * 109.47426 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46741 * 59.98706 * 7 6 5 10 10 C 1.53000 * 109.47501 * 299.98697 * 7 6 5 11 11 C 1.50700 * 109.46786 * 184.99870 * 10 7 6 12 12 O 1.21287 * 120.00477 * 359.97438 * 11 10 7 13 13 N 1.34778 * 119.99442 * 179.97438 * 11 10 7 14 14 C 1.46501 * 120.00301 * 0.02562 * 13 11 10 15 15 C 1.37097 * 119.99932 * 179.97438 * 13 11 10 16 16 H 1.08003 * 120.00048 * 24.39550 * 15 13 11 17 17 C 1.38949 * 120.00197 * 204.39805 * 15 13 11 18 18 N 1.31405 * 120.00067 * 12.63904 * 17 15 13 19 19 Si 1.86808 * 119.99968 * 192.64057 * 17 15 13 20 20 H 1.48502 * 109.46925 * 90.00158 * 19 17 15 21 21 H 1.48498 * 109.47096 * 209.99973 * 19 17 15 22 22 H 1.48494 * 109.46913 * 329.99692 * 19 17 15 23 23 C 1.38234 * 119.99888 * 359.82424 * 6 5 4 24 24 C 1.38231 * 120.00190 * 90.00053 * 3 2 1 25 25 H 1.08999 * 109.46978 * 300.00702 * 1 2 3 26 26 H 1.08998 * 109.47097 * 59.99993 * 1 2 3 27 27 H 1.08995 * 109.47394 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46732 * 119.99533 * 2 1 3 29 29 H 1.08998 * 109.47463 * 239.99508 * 2 1 3 30 30 H 1.08000 * 120.00338 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00328 * 180.27587 * 5 4 3 32 32 H 1.09004 * 109.47676 * 59.99686 * 9 7 6 33 33 H 1.08998 * 109.47414 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47385 * 299.99679 * 9 7 6 35 35 H 1.08997 * 109.46532 * 304.99691 * 10 7 6 36 36 H 1.08993 * 109.46718 * 64.99751 * 10 7 6 37 37 H 1.09004 * 109.46959 * 85.86127 * 14 13 11 38 38 H 1.09004 * 109.47297 * 205.85845 * 14 13 11 39 39 H 1.08994 * 109.46817 * 325.86233 * 14 13 11 40 40 H 0.97008 * 120.00402 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00247 * 179.97438 * 23 6 5 42 42 H 1.08002 * 120.00003 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7249 3.3752 -1.1972 6 6 2.9543 4.0273 -0.0001 7 6 3.4558 5.4484 -0.0001 8 1 3.5758 5.7914 1.0275 9 6 2.4479 6.3447 -0.7223 10 6 4.8040 5.5135 -0.7205 11 6 5.3634 6.9088 -0.6140 12 8 4.7445 7.7668 -0.0209 13 7 6.5516 7.2031 -1.1780 14 6 7.2990 6.1669 -1.8949 15 6 7.0603 8.4726 -1.0817 16 1 6.7558 9.1162 -0.2697 17 6 7.9677 8.9311 -2.0289 18 7 8.1515 8.2582 -3.1425 19 14 8.9264 10.5042 -1.7191 20 1 10.1969 10.1804 -1.0218 21 1 9.2272 11.1639 -3.0150 22 1 8.1171 11.4188 -0.8743 23 6 2.7235 3.3758 1.1971 24 6 2.2627 2.0725 1.1971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.0928 1.5597 -2.1325 31 1 2.9049 3.8843 -2.1326 32 1 1.4873 6.2983 -0.2092 33 1 2.8103 7.3727 -0.7220 34 1 2.3277 6.0018 -1.7500 35 1 5.4962 4.8084 -0.2602 36 1 4.6676 5.2558 -1.7707 37 1 6.9538 6.1189 -2.9278 38 1 8.3619 6.4081 -1.8779 39 1 7.1373 5.2030 -1.4126 40 1 8.7848 8.5785 -3.8039 41 1 2.9032 3.8850 2.1324 42 1 2.0824 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265613082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = -43.204535 kcal Electronic energy + Delta-G solvation = -20927.067990 eV Core-core repulsion = 17870.720732 eV Total energy + Delta-G solvation = -3056.347258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92881 -40.06347 -37.10631 -36.21223 -33.88217 -33.56080 -31.76090 -29.84276 -28.97290 -27.89540 -26.14751 -25.02411 -23.63849 -22.63908 -21.21089 -20.10096 -18.86796 -18.05445 -17.11676 -16.63318 -16.32620 -16.17099 -15.86595 -15.75223 -14.88704 -14.61953 -14.50399 -14.43097 -14.17745 -14.01059 -13.76729 -13.43120 -13.29406 -13.14149 -12.89995 -12.71240 -12.66105 -12.40927 -12.28542 -12.18413 -12.13942 -11.86790 -11.76049 -11.52647 -11.44125 -10.98183 -10.21715 -9.75078 -9.64015 -9.33732 -8.33057 -5.97934 0.48305 0.57176 1.37199 1.40115 1.52457 2.06688 2.28405 2.87443 3.09388 3.12816 3.79423 3.84955 3.99650 4.10735 4.20117 4.22236 4.32817 4.39593 4.51564 4.57249 4.65721 4.66373 4.71587 4.74934 4.78057 4.89990 5.02904 5.07003 5.11766 5.13437 5.22507 5.23057 5.33029 5.35799 5.42004 5.44148 5.47274 5.63787 5.79184 5.85159 6.12708 6.19479 6.50979 7.19250 7.50320 8.07701 8.70170 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.003375 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.060149 B = 8293.389273 C = 8566.733269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.026 4.026 8 H 0.064 0.936 9 C -0.138 4.138 10 C -0.107 4.107 11 C 0.440 3.560 12 O -0.623 6.623 13 N -0.469 5.469 14 C 0.123 3.877 15 C -0.343 4.343 16 H 0.070 0.930 17 C -0.004 4.004 18 N -0.898 5.898 19 Si 0.989 3.011 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.277 1.277 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.273 0.727 41 H 0.123 0.877 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 -17.528 3.199 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.139 4.139 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.045 4.045 8 H 0.083 0.917 9 C -0.196 4.196 10 C -0.147 4.147 11 C 0.230 3.770 12 O -0.511 6.511 13 N -0.188 5.188 14 C -0.021 4.021 15 C -0.471 4.471 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.537 5.537 19 Si 0.812 3.188 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.299 -17.107 3.288 20.237 hybrid contribution 0.719 1.259 -0.090 1.452 sum -9.580 -15.848 3.198 18.793 Atomic orbital electron populations 1.21735 0.94341 1.02339 1.01798 1.20569 0.96419 0.91280 1.03632 1.20185 0.98944 0.97349 0.92877 1.21234 0.99702 0.94381 0.98555 1.21128 0.99744 0.95318 0.97579 1.19833 0.99677 0.94768 0.94128 1.19703 0.93190 0.91742 0.99818 0.91736 1.21821 0.98119 0.99841 0.99782 1.21541 0.97319 0.93181 1.02639 1.21056 0.80988 0.91526 0.83396 1.90438 1.60253 1.51944 1.48425 1.43890 1.16887 1.09930 1.48077 1.21398 0.96992 0.88392 0.95276 1.19595 1.25064 0.91899 1.10546 0.91235 1.26087 0.98760 1.02092 0.93648 1.70063 1.35379 1.41210 1.07052 0.85007 0.78406 0.77544 0.77822 1.19027 1.19857 1.20162 1.21227 1.00132 0.95527 0.97487 1.21215 0.99749 0.94323 0.98559 0.93035 0.93075 0.91064 0.90212 0.90251 0.84479 0.85944 0.92301 0.93425 0.92466 0.88962 0.89003 0.93944 0.92535 0.91770 0.91776 0.85860 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.08 -1.12 6.07 29.85 0.18 -0.94 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.93 16 4 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 5 C -0.12 -3.00 8.76 22.27 0.20 -2.81 16 6 C -0.08 -2.34 4.78 -19.87 -0.09 -2.43 16 7 C -0.03 -0.86 2.21 -11.54 -0.03 -0.89 16 8 H 0.06 2.37 7.69 -2.38 -0.02 2.36 16 9 C -0.14 -4.81 8.75 71.98 0.63 -4.18 16 10 C -0.11 -3.94 3.52 29.85 0.11 -3.84 16 11 C 0.44 21.89 7.34 87.66 0.64 22.54 16 12 O -0.62 -35.27 13.68 -3.05 -0.04 -35.32 16 13 N -0.47 -24.83 3.01 -658.89 -1.98 -26.82 16 14 C 0.12 5.53 8.44 127.77 1.08 6.61 16 15 C -0.34 -19.97 9.24 84.04 0.78 -19.19 16 16 H 0.07 4.32 7.45 -2.91 -0.02 4.30 16 17 C 0.00 -0.24 5.04 84.93 0.43 0.19 16 18 N -0.90 -48.57 10.83 21.66 0.23 -48.34 16 19 Si 0.99 43.33 29.57 68.60 2.03 45.36 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C -0.13 -3.14 9.67 22.27 0.22 -2.93 16 24 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.94 8.09 -2.38 -0.02 0.93 16 29 H 0.08 0.95 8.08 -2.39 -0.02 0.94 16 30 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.12 2.97 7.16 -2.91 -0.02 2.95 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 2.03 5.95 -2.39 -0.01 2.01 16 34 H 0.06 1.80 7.39 -2.38 -0.02 1.78 16 35 H 0.09 3.08 7.41 -2.39 -0.02 3.06 16 36 H 0.09 3.14 7.54 -2.39 -0.02 3.12 16 37 H 0.04 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.06 2.71 6.80 -2.38 -0.02 2.69 16 39 H 0.06 2.34 6.61 -2.39 -0.02 2.33 16 40 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 41 H 0.12 2.90 7.95 -2.91 -0.02 2.88 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -67.20 339.60 6.40 -60.80 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.98 Total: 19.83 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.18 Total: -15.52 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.75 Total: -75.15 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.04 Total: -35.32 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.20 6.40 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265613082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.595 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds