Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.37116 * 2 1 4 4 C 1.54262 * 110.31943 * 122.18258 * 2 1 3 5 5 C 1.54375 * 105.06247 * 118.89496 * 4 2 1 6 6 N 1.48556 * 104.59437 * 336.14616 * 5 4 2 7 7 C 1.46899 * 111.00192 * 159.03694 * 6 5 4 8 8 C 1.50706 * 109.46983 * 69.87697 * 7 6 5 9 9 C 1.38303 * 119.93034 * 90.00068 * 8 7 6 10 10 C 1.38099 * 120.06408 * 180.02562 * 9 8 7 11 11 C 1.38873 * 119.93656 * 359.97438 * 10 9 8 12 12 O 1.35754 * 120.07268 * 180.02562 * 11 10 9 13 13 C 1.34829 * 116.99935 * 354.46689 * 12 11 10 14 14 H 1.07998 * 119.99409 * 5.05327 * 13 12 11 15 15 C 1.38651 * 120.00088 * 185.05715 * 13 12 11 16 16 N 1.31552 * 120.00423 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00037 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46940 * 89.99867 * 17 15 13 19 19 H 1.48497 * 109.47214 * 210.00348 * 17 15 13 20 20 H 1.48504 * 109.47273 * 330.00405 * 17 15 13 21 21 C 1.38882 * 119.85929 * 0.28297 * 11 10 9 22 22 C 1.38105 * 119.92822 * 359.41605 * 21 11 10 23 23 C 1.48561 * 104.22200 * 39.48556 * 6 5 4 24 24 H 1.08996 * 109.46886 * 299.27556 * 1 2 3 25 25 H 1.09009 * 109.46447 * 59.27195 * 1 2 3 26 26 H 1.08995 * 109.46996 * 179.26958 * 1 2 3 27 27 H 1.09003 * 109.47163 * 180.72001 * 3 2 1 28 28 H 1.08996 * 109.47056 * 300.72531 * 3 2 1 29 29 H 1.09003 * 109.46814 * 60.72711 * 3 2 1 30 30 H 1.09003 * 110.32598 * 0.02562 * 4 2 1 31 31 H 1.08998 * 110.40919 * 237.83347 * 4 2 1 32 32 H 1.09003 * 110.41596 * 217.36830 * 5 4 2 33 33 H 1.09000 * 110.51472 * 94.97372 * 5 4 2 34 34 H 1.08999 * 109.47612 * 309.87774 * 7 6 5 35 35 H 1.09000 * 109.47408 * 189.87221 * 7 6 5 36 36 H 1.07996 * 119.96532 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.03112 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00417 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.03715 * 179.72094 * 21 11 10 40 40 H 1.08002 * 119.95948 * 180.32276 * 22 21 11 41 41 H 1.08998 * 110.41541 * 79.29559 * 23 6 5 42 42 H 1.09007 * 110.41276 * 201.74136 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0657 -0.7705 1.2244 5 6 2.8805 -1.9423 0.6359 6 7 2.3147 -2.1468 -0.7223 7 6 3.2649 -2.8595 -1.5867 8 6 3.3924 -4.2876 -1.1225 9 6 2.5520 -5.2581 -1.6371 10 6 2.6661 -6.5675 -1.2133 11 6 3.6262 -6.9095 -0.2700 12 8 3.7411 -8.1959 0.1481 13 6 2.8203 -9.0710 -0.3038 14 1 2.0867 -8.7554 -1.0308 15 6 2.8152 -10.3759 0.1650 16 7 1.9171 -11.2299 -0.2762 17 14 4.0846 -10.9217 1.4221 18 1 3.5567 -10.6909 2.7908 19 1 4.3722 -12.3671 1.2396 20 1 5.3339 -10.1409 1.2353 21 6 4.4650 -5.9317 0.2487 22 6 4.3501 -4.6251 -0.1837 23 6 2.0663 -0.7711 -1.2252 24 1 -0.3633 0.5025 0.8964 25 1 -0.3632 0.5252 -0.8835 26 1 -0.3633 -1.0275 -0.0131 27 1 3.1524 1.4172 -0.0129 28 1 1.6969 1.9576 -0.8834 29 1 1.7180 1.9498 0.8965 30 1 1.2387 -1.1491 1.8250 31 1 2.7077 -0.1279 1.8268 32 1 2.7488 -2.8389 1.2416 33 1 3.9364 -1.6793 0.5722 34 1 4.2387 -2.3725 -1.5354 35 1 2.9039 -2.8426 -2.6150 36 1 1.8059 -4.9916 -2.3709 37 1 2.0098 -7.3250 -1.6158 38 1 1.9137 -12.1428 0.0514 39 1 5.2097 -6.1937 0.9858 40 1 5.0057 -3.8653 0.2155 41 1 2.9942 -0.3227 -1.5803 42 1 1.3214 -0.7859 -2.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266578581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -7.202019 kcal Electronic energy + Delta-G solvation = -20927.988207 eV Core-core repulsion = 17873.202136 eV Total energy + Delta-G solvation = -3054.786072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.75143 -38.95898 -36.82901 -34.27820 -32.36841 -30.58248 -30.12481 -29.28226 -27.49661 -26.24692 -25.07899 -23.78819 -22.15720 -21.25244 -20.23729 -19.05461 -17.86229 -17.22857 -15.80145 -15.62927 -14.95099 -14.77735 -14.17129 -14.05915 -13.86840 -13.78341 -13.62771 -13.47314 -13.18131 -12.74482 -12.61976 -12.33901 -12.20021 -11.95863 -11.80566 -11.58491 -11.34310 -11.14062 -10.93591 -10.75032 -10.70594 -10.61707 -10.58672 -10.48354 -10.12557 -9.36009 -8.85368 -8.39384 -8.21541 -7.28518 -6.39969 -4.06508 2.16063 2.21738 3.22834 3.26560 3.41138 4.07440 4.24942 4.38447 4.55851 4.60200 4.78535 4.87850 5.12462 5.12577 5.19181 5.22590 5.31466 5.36485 5.43993 5.51460 5.53897 5.66691 5.68298 5.70398 5.75998 5.82835 5.84814 5.91254 6.02393 6.10088 6.13601 6.16496 6.24293 6.36890 6.59507 6.80272 6.90325 7.05489 7.13584 7.29294 7.37045 7.64069 7.82684 8.05930 8.95442 9.58220 10.67796 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.003388 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.726506 B = 8263.253869 C = 8341.573695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.117 4.117 5 C 0.036 3.964 6 N -0.502 5.502 7 C 0.101 3.899 8 C -0.168 4.168 9 C -0.052 4.052 10 C -0.222 4.222 11 C 0.161 3.839 12 O -0.219 6.219 13 C -0.389 4.389 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.193 4.193 22 C -0.070 4.070 23 C 0.039 3.961 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 21.909 0.189 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.155 4.155 5 C -0.092 4.092 6 N -0.226 5.226 7 C -0.026 4.026 8 C -0.169 4.169 9 C -0.071 4.071 10 C -0.241 4.241 11 C 0.108 3.892 12 O -0.124 6.124 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.212 4.212 22 C -0.089 4.089 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.705 21.224 0.338 21.238 hybrid contribution 1.108 0.000 0.377 1.170 sum 1.812 21.224 0.714 21.313 Atomic orbital electron populations 1.21826 0.93729 1.02444 1.01072 1.21293 0.96232 0.94583 0.94983 1.21890 1.00585 0.95368 1.01709 1.22478 0.99821 0.96353 0.96887 1.23090 0.96131 0.98624 0.91349 1.65461 1.41300 1.13693 1.02116 1.20968 0.93397 0.91789 0.96465 1.19112 1.00700 0.93876 1.03259 1.20614 0.96575 0.92053 0.97832 1.21276 1.03053 0.97125 1.02613 1.19123 0.93273 0.84543 0.92211 1.83569 1.49709 1.14408 1.64686 1.20774 1.09994 0.90533 1.25145 0.87620 1.24461 0.97264 0.94536 0.97740 1.69645 1.33756 1.05361 1.43088 0.86185 0.82093 0.77621 0.81017 1.19895 1.20810 1.18393 1.20158 1.03756 0.91865 1.05470 1.20465 0.97371 0.94775 0.96289 1.23239 0.99570 0.89079 0.97037 0.92981 0.92981 0.91665 0.92829 0.92658 0.92536 0.90948 0.91584 0.89776 0.94265 0.94774 0.90777 0.87264 0.85005 0.91075 0.86690 0.87468 0.94147 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.23 37.16 0.31 -0.89 16 2 C -0.07 -0.65 1.03 -153.12 -0.16 -0.81 16 3 C -0.14 -1.05 8.25 37.16 0.31 -0.75 16 4 C -0.12 -1.19 6.29 -25.35 -0.16 -1.35 16 5 C 0.04 0.44 5.47 -2.19 -0.01 0.43 16 6 N -0.50 -6.52 5.36 -231.41 -1.24 -7.76 16 7 C 0.10 1.37 4.96 -4.97 -0.02 1.35 16 8 C -0.17 -2.81 5.10 -104.57 -0.53 -3.35 16 9 C -0.05 -0.96 9.69 -39.61 -0.38 -1.35 16 10 C -0.22 -4.85 9.17 -39.40 -0.36 -5.21 16 11 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 12 O -0.22 -5.83 8.59 0.04 0.00 -5.83 16 13 C -0.39 -11.07 9.95 30.88 0.31 -10.76 16 14 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 15 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 17 Si 0.91 21.84 28.62 -169.99 -4.86 16.97 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.19 -3.86 9.99 -39.39 -0.39 -4.25 16 22 C -0.07 -1.20 8.72 -39.61 -0.35 -1.54 16 23 C 0.04 0.41 5.58 -2.18 -0.01 0.40 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.75 7.71 -51.93 -0.40 0.35 16 31 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 33 H 0.04 0.46 7.82 -51.93 -0.41 0.05 16 34 H 0.03 0.43 7.82 -51.93 -0.41 0.03 16 35 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 3.04 5.64 -52.48 -0.30 2.74 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.04 0.41 7.70 -51.93 -0.40 0.01 16 42 H 0.08 0.81 7.86 -51.92 -0.41 0.40 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -29.19 337.34 -8.83 -38.02 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.77 Total: 1.30 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.82 Total: -22.91 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: -0.47 Total: -32.63 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: 0.00 Total: -5.83 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.19 -8.83 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266578581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.818 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds