Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 110.37116 * 2 1 4 4 C 1.54262 * 110.31943 * 122.18258 * 2 1 3 5 5 C 1.54375 * 105.06247 * 118.89496 * 4 2 1 6 6 N 1.48556 * 104.59437 * 336.14616 * 5 4 2 7 7 C 1.46899 * 111.00192 * 159.03694 * 6 5 4 8 8 C 1.50706 * 109.46983 * 69.87697 * 7 6 5 9 9 C 1.38303 * 119.93034 * 90.00068 * 8 7 6 10 10 C 1.38099 * 120.06408 * 180.02562 * 9 8 7 11 11 C 1.38873 * 119.93656 * 359.97438 * 10 9 8 12 12 O 1.35754 * 120.07268 * 180.02562 * 11 10 9 13 13 C 1.34829 * 116.99935 * 354.46689 * 12 11 10 14 14 H 1.07998 * 119.99409 * 5.05327 * 13 12 11 15 15 C 1.38651 * 120.00088 * 185.05715 * 13 12 11 16 16 N 1.31552 * 120.00423 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00037 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46940 * 89.99867 * 17 15 13 19 19 H 1.48497 * 109.47214 * 210.00348 * 17 15 13 20 20 H 1.48504 * 109.47273 * 330.00405 * 17 15 13 21 21 C 1.38882 * 119.85929 * 0.28297 * 11 10 9 22 22 C 1.38105 * 119.92822 * 359.41605 * 21 11 10 23 23 C 1.48561 * 104.22200 * 39.48556 * 6 5 4 24 24 H 1.08996 * 109.46886 * 299.27556 * 1 2 3 25 25 H 1.09009 * 109.46447 * 59.27195 * 1 2 3 26 26 H 1.08995 * 109.46996 * 179.26958 * 1 2 3 27 27 H 1.09003 * 109.47163 * 180.72001 * 3 2 1 28 28 H 1.08996 * 109.47056 * 300.72531 * 3 2 1 29 29 H 1.09003 * 109.46814 * 60.72711 * 3 2 1 30 30 H 1.09003 * 110.32598 * 0.02562 * 4 2 1 31 31 H 1.08998 * 110.40919 * 237.83347 * 4 2 1 32 32 H 1.09003 * 110.41596 * 217.36830 * 5 4 2 33 33 H 1.09000 * 110.51472 * 94.97372 * 5 4 2 34 34 H 1.08999 * 109.47612 * 309.87774 * 7 6 5 35 35 H 1.09000 * 109.47408 * 189.87221 * 7 6 5 36 36 H 1.07996 * 119.96532 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.03112 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00417 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.03715 * 179.72094 * 21 11 10 40 40 H 1.08002 * 119.95948 * 180.32276 * 22 21 11 41 41 H 1.08998 * 110.41541 * 79.29559 * 23 6 5 42 42 H 1.09007 * 110.41276 * 201.74136 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0657 -0.7705 1.2244 5 6 2.8805 -1.9423 0.6359 6 7 2.3147 -2.1468 -0.7223 7 6 3.2649 -2.8595 -1.5867 8 6 3.3924 -4.2876 -1.1225 9 6 2.5520 -5.2581 -1.6371 10 6 2.6661 -6.5675 -1.2133 11 6 3.6262 -6.9095 -0.2700 12 8 3.7411 -8.1959 0.1481 13 6 2.8203 -9.0710 -0.3038 14 1 2.0867 -8.7554 -1.0308 15 6 2.8152 -10.3759 0.1650 16 7 1.9171 -11.2299 -0.2762 17 14 4.0846 -10.9217 1.4221 18 1 3.5567 -10.6909 2.7908 19 1 4.3722 -12.3671 1.2396 20 1 5.3339 -10.1409 1.2353 21 6 4.4650 -5.9317 0.2487 22 6 4.3501 -4.6251 -0.1837 23 6 2.0663 -0.7711 -1.2252 24 1 -0.3633 0.5025 0.8964 25 1 -0.3632 0.5252 -0.8835 26 1 -0.3633 -1.0275 -0.0131 27 1 3.1524 1.4172 -0.0129 28 1 1.6969 1.9576 -0.8834 29 1 1.7180 1.9498 0.8965 30 1 1.2387 -1.1491 1.8250 31 1 2.7077 -0.1279 1.8268 32 1 2.7488 -2.8389 1.2416 33 1 3.9364 -1.6793 0.5722 34 1 4.2387 -2.3725 -1.5354 35 1 2.9039 -2.8426 -2.6150 36 1 1.8059 -4.9916 -2.3709 37 1 2.0098 -7.3250 -1.6158 38 1 1.9137 -12.1428 0.0514 39 1 5.2097 -6.1937 0.9858 40 1 5.0057 -3.8653 0.2155 41 1 2.9942 -0.3227 -1.5803 42 1 1.3214 -0.7859 -2.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266578581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -24.267339 kcal Electronic energy + Delta-G solvation = -20928.728215 eV Core-core repulsion = 17873.202136 eV Total energy + Delta-G solvation = -3055.526079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03664 -40.29933 -38.42643 -35.32866 -34.41727 -31.94921 -31.55369 -30.36833 -28.13271 -27.77304 -26.54683 -24.90114 -23.73136 -22.49930 -21.54320 -19.85057 -19.80712 -19.07967 -16.88773 -16.62064 -16.52929 -16.20658 -15.69943 -15.63186 -15.27476 -14.95744 -14.73535 -14.43748 -14.32189 -14.25202 -14.07053 -13.77192 -13.48320 -13.10378 -12.86065 -12.67396 -12.58709 -12.43770 -12.24436 -12.13357 -11.99917 -11.89652 -11.46742 -11.43714 -11.33818 -11.26513 -10.90153 -9.79791 -9.37223 -8.96195 -8.50385 -6.23129 0.57148 0.62829 1.30731 1.35176 1.51592 2.27790 2.71626 2.99085 3.13764 3.36597 3.63809 3.75369 3.98140 4.04622 4.08488 4.17036 4.35164 4.42925 4.45247 4.53165 4.58075 4.65877 4.73530 4.81250 4.83936 4.87078 4.92475 4.96544 4.98325 5.12010 5.16533 5.21502 5.25818 5.35806 5.38244 5.41177 5.50735 5.57853 5.75334 5.81301 5.90781 6.03639 6.14220 6.26051 6.83903 7.58360 8.61463 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.003388 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.726506 B = 8263.253869 C = 8341.573695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.133 4.133 4 C -0.115 4.115 5 C 0.033 3.967 6 N -0.522 5.522 7 C 0.103 3.897 8 C -0.143 4.143 9 C -0.057 4.057 10 C -0.238 4.238 11 C 0.120 3.880 12 O -0.245 6.245 13 C -0.400 4.400 14 H 0.079 0.921 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.262 1.262 21 C -0.191 4.191 22 C -0.061 4.061 23 C 0.040 3.960 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.052 0.948 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 25.471 0.709 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.191 4.191 4 C -0.153 4.153 5 C -0.094 4.094 6 N -0.246 5.246 7 C -0.024 4.024 8 C -0.144 4.144 9 C -0.075 4.075 10 C -0.257 4.257 11 C 0.071 3.929 12 O -0.153 6.153 13 C -0.476 4.476 14 H 0.097 0.903 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.210 4.210 22 C -0.079 4.079 23 C -0.087 4.087 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.071 0.929 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.217 24.838 0.845 24.951 hybrid contribution 0.593 -0.741 0.114 0.956 sum 2.810 24.096 0.959 24.279 Atomic orbital electron populations 1.21803 0.93789 1.01337 1.01964 1.21306 0.96185 0.95478 0.93938 1.21849 1.00743 0.94012 1.02487 1.22475 0.99593 0.95988 0.97275 1.23094 0.97161 0.98443 0.90748 1.65379 1.41235 1.15502 1.02493 1.20976 0.94933 0.89456 0.97044 1.19603 0.98396 0.95476 1.00925 1.20861 0.97489 0.90912 0.98250 1.21268 1.02977 0.98259 1.03190 1.19660 0.95231 0.84292 0.93742 1.83510 1.49922 1.15604 1.66267 1.20705 1.10275 0.91557 1.25084 0.90340 1.25296 0.99384 0.94413 0.99799 1.69730 1.35783 1.05989 1.45042 0.85199 0.79152 0.77709 0.78519 1.19062 1.19117 1.18668 1.20485 1.03010 0.92248 1.05281 1.20894 0.97400 0.94242 0.95365 1.23287 1.00224 0.87691 0.97521 0.92202 0.92049 0.93729 0.92467 0.91902 0.91832 0.91843 0.89983 0.92072 0.93044 0.92692 0.89676 0.85282 0.87644 0.90555 0.85372 0.83502 0.92938 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.23 71.98 0.59 -1.48 16 2 C -0.07 -1.06 1.03 -51.28 -0.05 -1.11 16 3 C -0.13 -1.52 8.25 71.98 0.59 -0.93 16 4 C -0.12 -2.01 6.29 31.49 0.20 -1.81 16 5 C 0.03 0.71 5.47 86.45 0.47 1.18 16 6 N -0.52 -11.94 5.36 -886.04 -4.75 -16.69 16 7 C 0.10 2.40 4.96 85.56 0.42 2.83 16 8 C -0.14 -4.41 5.10 -19.83 -0.10 -4.51 16 9 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 10 C -0.24 -10.85 9.17 22.39 0.21 -10.65 16 11 C 0.12 5.75 6.65 22.58 0.15 5.90 16 12 O -0.25 -13.65 8.59 -22.78 -0.20 -13.85 16 13 C -0.40 -24.14 9.95 67.92 0.68 -23.47 16 14 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 15 C 0.01 0.55 5.49 84.83 0.47 1.01 16 16 N -0.92 -56.21 13.96 21.61 0.30 -55.91 16 17 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.19 -7.43 9.99 22.39 0.22 -7.20 16 22 C -0.06 -1.88 8.72 22.25 0.19 -1.69 16 23 C 0.04 0.71 5.58 86.45 0.48 1.19 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 1.21 7.71 -2.39 -0.02 1.19 16 31 H 0.08 1.17 7.71 -2.39 -0.02 1.15 16 32 H 0.06 1.58 7.81 -2.39 -0.02 1.56 16 33 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 34 H 0.05 1.10 7.82 -2.39 -0.02 1.08 16 35 H 0.08 1.84 8.07 -2.39 -0.02 1.82 16 36 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.11 5.31 5.64 -2.91 -0.02 5.30 16 38 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.05 0.82 7.70 -2.39 -0.02 0.80 16 42 H 0.08 1.39 7.86 -2.38 -0.02 1.37 16 Total: -1.00 -66.41 337.34 3.04 -63.37 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.98 Total: 17.56 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 4.74 Total: -42.58 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -4.45 Total: -72.60 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.20 Total: -13.85 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -66.41 3.04 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266578581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.099 kcal (2) G-P(sol) polarization free energy of solvation -66.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds