Wall clock time and date at job start Mon Mar 30 2020 01:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47428 * 2 1 4 4 C 1.38235 * 120.00244 * 89.99771 * 3 2 1 5 5 C 1.38232 * 120.00183 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00043 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99960 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47025 * 50.92574 * 7 6 5 9 9 C 1.52994 * 109.47564 * 290.92444 * 7 6 5 10 10 C 1.50701 * 109.46851 * 170.92087 * 7 6 5 11 11 O 1.21294 * 119.99599 * 115.52912 * 10 7 6 12 12 N 1.34774 * 120.00125 * 295.24854 * 10 7 6 13 13 C 1.46497 * 120.00153 * 6.98928 * 12 10 7 14 14 C 1.37099 * 119.99871 * 186.98098 * 12 10 7 15 15 H 1.07998 * 119.99924 * 2.35014 * 14 12 10 16 16 C 1.38954 * 119.99934 * 182.34939 * 14 12 10 17 17 N 1.31410 * 120.00059 * 5.19209 * 16 14 12 18 18 Si 1.86795 * 120.00019 * 185.19531 * 16 14 12 19 19 H 1.48501 * 109.47266 * 59.99695 * 18 16 14 20 20 H 1.48497 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47159 * 300.00014 * 18 16 14 22 22 C 1.38231 * 119.99927 * 0.25423 * 6 5 4 23 23 C 1.38234 * 119.99945 * 270.02478 * 3 2 1 24 24 H 1.08999 * 109.47568 * 59.99664 * 1 2 3 25 25 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47241 * 300.00232 * 1 2 3 27 27 H 1.09002 * 109.47241 * 239.99767 * 2 1 3 28 28 H 1.08999 * 109.47568 * 120.00336 * 2 1 3 29 29 H 1.08003 * 119.99737 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.00120 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.47203 * 174.44214 * 8 7 6 32 32 H 1.09001 * 109.46883 * 294.44732 * 8 7 6 33 33 H 1.08999 * 109.47005 * 54.44284 * 8 7 6 34 34 H 1.08992 * 109.47309 * 304.99782 * 9 7 6 35 35 H 1.09000 * 109.47228 * 64.99435 * 9 7 6 36 36 H 1.09001 * 109.47592 * 184.99366 * 9 7 6 37 37 H 1.08999 * 109.47046 * 5.47973 * 13 12 10 38 38 H 1.08997 * 109.47327 * 125.48672 * 13 12 10 39 39 H 1.09003 * 109.47180 * 245.48625 * 13 12 10 40 40 H 0.96998 * 120.00510 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00357 * 179.72217 * 22 6 5 42 42 H 1.07999 * 120.00458 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9546 4.0272 -0.0001 7 6 3.4570 5.4479 -0.0001 8 6 4.6828 5.5554 0.9092 9 6 2.3568 6.3780 0.5150 10 6 3.8359 5.8467 -1.4031 11 8 3.2257 6.7296 -1.9683 12 7 4.8563 5.2262 -2.0277 13 6 5.4975 4.0646 -1.4068 14 6 5.2941 5.6821 -3.2443 15 1 4.8467 6.5610 -3.6845 16 6 6.3134 5.0133 -3.9110 17 7 6.7877 3.8878 -3.4262 18 14 7.0095 5.7141 -5.4965 19 1 7.5755 7.0620 -5.2354 20 1 8.0782 4.8181 -6.0065 21 1 5.9276 5.8192 -6.5082 22 6 2.7187 3.3775 -1.1972 23 6 2.2623 2.0726 -1.1972 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0831 1.5632 2.1324 30 1 2.9045 3.8845 2.1324 31 1 5.1050 6.5574 0.8330 32 1 4.3879 5.3628 1.9408 33 1 5.4286 4.8225 0.6017 34 1 1.4539 6.2364 -0.0788 35 1 2.1450 6.1470 1.5590 36 1 2.6877 7.4133 0.4319 37 1 4.9570 3.7927 -0.5002 38 1 5.4838 3.2264 -2.1034 39 1 6.5291 4.3106 -1.1547 40 1 7.4995 3.4210 -3.8913 41 1 2.8944 3.8880 -2.1325 42 1 2.0823 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267319275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:14 Heat of formation + Delta-G solvation = 0.276387 kcal Electronic energy + Delta-G solvation = -22313.115445 eV Core-core repulsion = 19258.653661 eV Total energy + Delta-G solvation = -3054.461784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24348 -38.16602 -35.22706 -34.73636 -32.80164 -31.47779 -30.48638 -28.45300 -27.13893 -25.88656 -24.86443 -23.82094 -22.55904 -21.42912 -20.31821 -18.25669 -16.95476 -16.56048 -15.55221 -15.21147 -14.72665 -14.28044 -14.16051 -14.03760 -13.44374 -13.40180 -13.28401 -13.08333 -12.75029 -12.44517 -12.29015 -11.89598 -11.73240 -11.48393 -11.33958 -11.21767 -11.09826 -10.99307 -10.93181 -10.80994 -10.48247 -10.37889 -10.32971 -10.17165 -9.95659 -9.02311 -8.48853 -8.28103 -8.02013 -7.80515 -6.14422 -3.77555 1.70074 1.81925 3.18993 3.24831 3.29072 3.89517 4.11573 4.13445 4.83987 4.90971 5.01757 5.11698 5.29467 5.31096 5.37514 5.43280 5.51546 5.62806 5.67447 5.79869 5.84066 5.86186 5.91739 6.06226 6.13773 6.18771 6.25366 6.30346 6.36149 6.41199 6.49892 6.55551 6.62421 6.78097 6.85634 6.98501 7.09117 7.12808 7.40607 7.51121 7.65316 8.11001 8.54233 9.22223 9.50019 10.03134 10.73171 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.006141 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.786243 B = 4558.547006 C = 5400.598285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.060 4.060 7 C -0.037 4.037 8 C -0.149 4.149 9 C -0.113 4.113 10 C 0.449 3.551 11 O -0.595 6.595 12 N -0.442 5.442 13 C 0.097 3.903 14 C -0.299 4.299 15 H 0.102 0.898 16 C 0.027 3.973 17 N -0.887 5.887 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.097 4.097 23 C -0.114 4.114 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.264 0.736 41 H 0.132 0.868 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -7.017 9.471 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.061 4.061 7 C -0.040 4.040 8 C -0.206 4.206 9 C -0.171 4.171 10 C 0.237 3.763 11 O -0.480 6.480 12 N -0.160 5.160 13 C -0.046 4.046 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.175 4.175 17 N -0.528 5.528 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.115 4.115 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.502 -6.739 9.104 13.060 hybrid contribution 0.646 0.181 -0.788 1.035 sum -5.856 -6.558 8.316 12.102 Atomic orbital electron populations 1.21743 0.95131 1.01203 1.02200 1.20487 0.95837 0.93134 1.02458 1.19781 1.00332 0.95961 0.93306 1.20832 1.01332 0.94899 0.97040 1.20862 1.00491 0.94720 0.97292 1.19641 0.98366 0.94796 0.93252 1.19653 0.96406 0.92181 0.95767 1.22201 0.97207 1.03144 0.98031 1.21533 0.97604 0.98929 0.98994 1.19599 0.83456 0.85852 0.87443 1.90501 1.54910 1.35012 1.67610 1.43678 1.28303 1.26221 1.17763 1.22337 0.95611 0.90370 0.96237 1.19776 1.16353 1.11265 0.95341 0.87987 1.25289 0.97001 0.95619 0.99567 1.70131 1.27858 1.15202 1.39621 0.85938 0.78531 0.78595 0.81269 1.19983 1.20950 1.19921 1.21431 0.96801 0.94652 0.98631 1.20965 1.00135 0.94848 0.97262 0.92556 0.92804 0.92713 0.91255 0.91435 0.86733 0.86384 0.92288 0.92656 0.90461 0.92391 0.93158 0.91976 0.94007 0.88870 0.93707 0.92458 0.85052 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.15 0.37 -1.08 16 2 C -0.08 -0.91 6.06 -27.89 -0.17 -1.08 16 3 C -0.09 -1.33 5.13 -104.62 -0.54 -1.87 16 4 C -0.12 -1.69 9.70 -39.58 -0.38 -2.07 16 5 C -0.12 -1.73 8.97 -39.58 -0.36 -2.09 16 6 C -0.06 -1.08 2.98 -104.63 -0.31 -1.39 16 7 C -0.04 -0.70 0.60 -156.81 -0.09 -0.80 16 8 C -0.15 -2.53 7.71 37.16 0.29 -2.24 16 9 C -0.11 -1.98 7.64 37.15 0.28 -1.69 16 10 C 0.45 11.03 4.85 -10.99 -0.05 10.97 16 11 O -0.59 -16.64 15.57 5.55 0.09 -16.55 16 12 N -0.44 -11.35 2.42 -122.19 -0.30 -11.64 16 13 C 0.10 2.26 5.73 59.85 0.34 2.61 16 14 C -0.30 -8.37 9.57 -14.93 -0.14 -8.51 16 15 H 0.10 2.99 7.19 -52.49 -0.38 2.61 16 16 C 0.03 0.70 5.44 -17.47 -0.09 0.61 16 17 N -0.89 -23.37 9.48 55.50 0.53 -22.85 16 18 Si 0.93 20.96 29.56 -169.99 -5.02 15.94 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 C -0.10 -1.87 7.38 -39.58 -0.29 -2.16 16 23 C -0.11 -1.88 9.70 -39.58 -0.38 -2.26 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.12 1.52 7.14 -52.49 -0.37 1.14 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.08 1.38 4.85 -51.93 -0.25 1.12 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.06 1.12 8.02 -51.93 -0.42 0.70 16 37 H 0.04 0.86 2.97 -51.93 -0.15 0.71 16 38 H 0.09 2.35 6.31 -51.93 -0.33 2.02 16 39 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.13 2.99 6.03 -52.49 -0.32 2.67 16 42 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -29.95 326.37 -7.67 -37.62 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.34 Total: 5.62 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.54 Total: -13.05 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.23 Total: -34.49 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.09 Total: -16.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.95 -7.67 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267319275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.893 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds