Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47428 * 2 1 4 4 C 1.38235 * 120.00244 * 89.99771 * 3 2 1 5 5 C 1.38232 * 120.00183 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00043 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99960 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47025 * 50.92574 * 7 6 5 9 9 C 1.52994 * 109.47564 * 290.92444 * 7 6 5 10 10 C 1.50701 * 109.46851 * 170.92087 * 7 6 5 11 11 O 1.21294 * 119.99599 * 115.52912 * 10 7 6 12 12 N 1.34774 * 120.00125 * 295.24854 * 10 7 6 13 13 C 1.46497 * 120.00153 * 6.98928 * 12 10 7 14 14 C 1.37099 * 119.99871 * 186.98098 * 12 10 7 15 15 H 1.07998 * 119.99924 * 2.35014 * 14 12 10 16 16 C 1.38954 * 119.99934 * 182.34939 * 14 12 10 17 17 N 1.31410 * 120.00059 * 5.19209 * 16 14 12 18 18 Si 1.86795 * 120.00019 * 185.19531 * 16 14 12 19 19 H 1.48501 * 109.47266 * 59.99695 * 18 16 14 20 20 H 1.48497 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47159 * 300.00014 * 18 16 14 22 22 C 1.38231 * 119.99927 * 0.25423 * 6 5 4 23 23 C 1.38234 * 119.99945 * 270.02478 * 3 2 1 24 24 H 1.08999 * 109.47568 * 59.99664 * 1 2 3 25 25 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47241 * 300.00232 * 1 2 3 27 27 H 1.09002 * 109.47241 * 239.99767 * 2 1 3 28 28 H 1.08999 * 109.47568 * 120.00336 * 2 1 3 29 29 H 1.08003 * 119.99737 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.00120 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.47203 * 174.44214 * 8 7 6 32 32 H 1.09001 * 109.46883 * 294.44732 * 8 7 6 33 33 H 1.08999 * 109.47005 * 54.44284 * 8 7 6 34 34 H 1.08992 * 109.47309 * 304.99782 * 9 7 6 35 35 H 1.09000 * 109.47228 * 64.99435 * 9 7 6 36 36 H 1.09001 * 109.47592 * 184.99366 * 9 7 6 37 37 H 1.08999 * 109.47046 * 5.47973 * 13 12 10 38 38 H 1.08997 * 109.47327 * 125.48672 * 13 12 10 39 39 H 1.09003 * 109.47180 * 245.48625 * 13 12 10 40 40 H 0.96998 * 120.00510 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00357 * 179.72217 * 22 6 5 42 42 H 1.07999 * 120.00458 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7241 3.3755 1.1971 6 6 2.9546 4.0272 -0.0001 7 6 3.4570 5.4479 -0.0001 8 6 4.6828 5.5554 0.9092 9 6 2.3568 6.3780 0.5150 10 6 3.8359 5.8467 -1.4031 11 8 3.2257 6.7296 -1.9683 12 7 4.8563 5.2262 -2.0277 13 6 5.4975 4.0646 -1.4068 14 6 5.2941 5.6821 -3.2443 15 1 4.8467 6.5610 -3.6845 16 6 6.3134 5.0133 -3.9110 17 7 6.7877 3.8878 -3.4262 18 14 7.0095 5.7141 -5.4965 19 1 7.5755 7.0620 -5.2354 20 1 8.0782 4.8181 -6.0065 21 1 5.9276 5.8192 -6.5082 22 6 2.7187 3.3775 -1.1972 23 6 2.2623 2.0726 -1.1972 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0831 1.5632 2.1324 30 1 2.9045 3.8845 2.1324 31 1 5.1050 6.5574 0.8330 32 1 4.3879 5.3628 1.9408 33 1 5.4286 4.8225 0.6017 34 1 1.4539 6.2364 -0.0788 35 1 2.1450 6.1470 1.5590 36 1 2.6877 7.4133 0.4319 37 1 4.9570 3.7927 -0.5002 38 1 5.4838 3.2264 -2.1034 39 1 6.5291 4.3106 -1.1547 40 1 7.4995 3.4210 -3.8913 41 1 2.8944 3.8880 -2.1325 42 1 2.0823 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267319275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -15.631554 kcal Electronic energy + Delta-G solvation = -22313.805265 eV Core-core repulsion = 19258.653661 eV Total energy + Delta-G solvation = -3055.151604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80223 -39.68297 -36.88470 -36.56267 -33.95727 -33.47364 -31.75660 -29.58427 -28.83218 -27.58756 -26.73723 -25.02235 -23.91646 -22.78102 -21.64179 -19.93600 -18.97855 -18.20234 -17.15248 -16.65106 -16.19750 -15.93186 -15.73438 -15.54273 -14.86951 -14.74427 -14.55223 -14.44640 -14.07084 -13.95912 -13.68902 -13.35172 -13.28838 -13.06884 -12.84987 -12.70236 -12.63751 -12.51039 -12.27551 -12.19718 -12.11150 -12.04595 -11.72856 -11.60764 -11.42082 -11.05831 -10.24360 -9.86712 -9.73390 -9.29123 -8.18464 -5.91831 0.46628 0.57392 1.35041 1.36519 1.47646 2.00379 2.23539 2.88236 3.06047 3.10835 3.74173 3.77178 4.00954 4.06907 4.16065 4.21691 4.29567 4.40802 4.57067 4.61533 4.69977 4.73010 4.75922 4.78050 4.89999 4.92262 5.01428 5.10891 5.12331 5.13413 5.19259 5.25983 5.27897 5.36651 5.41113 5.44177 5.57511 5.63561 5.78687 5.79717 6.04807 6.19065 6.48809 7.15449 7.50340 8.03546 8.65823 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.006141 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.786243 B = 4558.547006 C = 5400.598285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.087 4.087 4 C -0.113 4.113 5 C -0.106 4.106 6 C -0.078 4.078 7 C -0.032 4.032 8 C -0.144 4.144 9 C -0.108 4.108 10 C 0.440 3.560 11 O -0.642 6.642 12 N -0.453 5.453 13 C 0.120 3.880 14 C -0.342 4.342 15 H 0.074 0.926 16 C -0.004 4.004 17 N -0.896 5.896 18 Si 0.991 3.009 19 H -0.272 1.272 20 H -0.266 1.266 21 H -0.276 1.276 22 C -0.127 4.127 23 C -0.127 4.127 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.270 0.730 41 H 0.080 0.920 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -9.039 12.448 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.131 4.131 5 C -0.124 4.124 6 C -0.078 4.078 7 C -0.035 4.035 8 C -0.201 4.201 9 C -0.165 4.165 10 C 0.230 3.770 11 O -0.531 6.531 12 N -0.170 5.170 13 C -0.023 4.023 14 C -0.470 4.470 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.536 5.536 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.191 1.191 21 H -0.201 1.201 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.669 -8.791 12.098 16.374 hybrid contribution 0.624 0.744 -1.720 1.976 sum -6.044 -8.047 10.377 14.456 Atomic orbital electron populations 1.21728 0.94145 1.02407 1.01777 1.20570 0.96560 0.91056 1.03640 1.20156 0.98663 0.97359 0.92487 1.21306 0.99154 0.94329 0.98276 1.21170 0.99071 0.95191 0.96920 1.19547 1.00173 0.94033 0.94076 1.19639 0.98044 0.93702 0.92117 1.22183 0.95694 1.02277 0.99952 1.21533 0.96001 0.97796 1.01217 1.20727 0.82132 0.84638 0.89539 1.90445 1.56164 1.37033 1.69466 1.43840 1.28873 1.26850 1.17470 1.22105 0.94939 0.88632 0.96598 1.19731 1.18165 1.11719 0.97409 0.90845 1.26038 0.96468 0.95707 1.02279 1.70251 1.27593 1.15322 1.40432 0.85032 0.77949 0.78223 0.77320 1.19700 1.19074 1.20112 1.21137 0.99959 0.96076 0.97358 1.21036 1.00686 0.94011 0.98768 0.93990 0.90845 0.92160 0.91343 0.89057 0.82626 0.82990 0.93285 0.87973 0.91567 0.94326 0.88578 0.93314 0.90934 0.91250 0.95165 0.91927 0.90181 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.68 16 2 C -0.08 -1.52 6.06 29.85 0.18 -1.34 16 3 C -0.09 -2.22 5.13 -19.87 -0.10 -2.32 16 4 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 5 C -0.11 -2.73 8.97 22.27 0.20 -2.53 16 6 C -0.08 -2.72 2.98 -19.87 -0.06 -2.78 16 7 C -0.03 -1.22 0.60 -53.68 -0.03 -1.25 16 8 C -0.14 -4.63 7.71 71.98 0.55 -4.08 16 9 C -0.11 -3.69 7.64 71.98 0.55 -3.14 16 10 C 0.44 22.87 4.85 87.66 0.43 23.29 16 11 O -0.64 -38.60 15.57 -3.07 -0.05 -38.65 16 12 N -0.45 -24.68 2.42 -658.90 -1.60 -26.28 16 13 C 0.12 5.78 5.73 127.77 0.73 6.51 16 14 C -0.34 -20.37 9.57 84.04 0.80 -19.56 16 15 H 0.07 4.67 7.19 -2.91 -0.02 4.65 16 16 C 0.00 -0.24 5.44 84.93 0.46 0.22 16 17 N -0.90 -48.41 9.48 21.66 0.21 -48.20 16 18 Si 0.99 44.06 29.56 68.60 2.03 46.08 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 22 C -0.13 -5.08 7.38 22.27 0.16 -4.91 16 23 C -0.13 -4.21 9.70 22.27 0.22 -4.00 16 24 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.15 2.90 7.14 -2.91 -0.02 2.88 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 2.32 7.17 -2.39 -0.02 2.30 16 33 H 0.07 2.27 4.85 -2.39 -0.01 2.25 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 36 H 0.05 1.76 8.02 -2.39 -0.02 1.74 16 37 H 0.07 3.02 2.97 -2.39 -0.01 3.01 16 38 H 0.07 3.66 6.31 -2.39 -0.02 3.64 16 39 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 40 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.08 4.00 6.03 -2.91 -0.02 3.98 16 42 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -71.15 326.37 6.61 -64.53 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.00 Total: 22.42 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 5.02 Total: -19.91 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.39 Total: -74.48 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.05 Total: -38.65 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.15 6.61 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267319275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.903 kcal (2) G-P(sol) polarization free energy of solvation -71.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds