Wall clock time and date at job start Mon Mar 30 2020 02:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37094 * 119.99587 * 2 1 4 4 H 1.07996 * 119.99876 * 201.69806 * 3 2 1 5 5 C 1.38949 * 120.00194 * 21.70820 * 3 2 1 6 6 N 1.31410 * 120.00125 * 11.33694 * 5 3 2 7 7 Si 1.86800 * 120.00008 * 191.34053 * 5 3 2 8 8 H 1.48505 * 109.46940 * 85.06538 * 7 5 3 9 9 H 1.48492 * 109.47148 * 205.06743 * 7 5 3 10 10 H 1.48506 * 109.47076 * 325.07099 * 7 5 3 11 11 C 1.34778 * 120.00137 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99885 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99853 * 0.02562 * 11 2 1 14 14 C 1.50703 * 109.46858 * 179.97438 * 13 11 2 15 15 C 1.38232 * 119.99595 * 270.27237 * 14 13 11 16 16 C 1.38236 * 120.00061 * 180.28336 * 15 14 13 17 17 C 1.38234 * 119.99837 * 359.46290 * 16 15 14 18 18 C 1.50700 * 120.00397 * 180.27914 * 17 16 15 19 19 C 1.53003 * 109.46689 * 59.99840 * 18 17 16 20 20 C 1.52997 * 109.47210 * 179.97438 * 18 17 16 21 21 C 1.52999 * 109.46916 * 300.00360 * 18 17 16 22 22 C 1.38235 * 119.99834 * 0.25553 * 17 16 15 23 23 C 1.38227 * 120.00223 * 89.99715 * 14 13 11 24 24 H 1.08997 * 109.47509 * 272.17327 * 1 2 3 25 25 H 1.09003 * 109.47499 * 32.17877 * 1 2 3 26 26 H 1.09004 * 109.47104 * 152.17813 * 1 2 3 27 27 H 0.96999 * 120.00017 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47285 * 59.99621 * 13 11 2 29 29 H 1.09007 * 109.47111 * 299.99168 * 13 11 2 30 30 H 1.08001 * 120.00609 * 0.02562 * 15 14 13 31 31 H 1.07997 * 120.00411 * 179.74230 * 16 15 14 32 32 H 1.09002 * 109.47134 * 60.00942 * 19 18 17 33 33 H 1.09001 * 109.47189 * 179.97438 * 19 18 17 34 34 H 1.08994 * 109.47524 * 300.00271 * 19 18 17 35 35 H 1.09006 * 109.46675 * 60.00516 * 20 18 17 36 36 H 1.09008 * 109.46912 * 179.97438 * 20 18 17 37 37 H 1.08991 * 109.47630 * 300.00017 * 20 18 17 38 38 H 1.08994 * 109.47227 * 59.99772 * 21 18 17 39 39 H 1.09001 * 109.46649 * 179.97438 * 21 18 17 40 40 H 1.08998 * 109.46931 * 299.99476 * 21 18 17 41 41 H 1.08002 * 119.99870 * 180.02562 * 22 17 16 42 42 H 1.08000 * 120.00578 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1730 1.2205 -0.3458 5 6 1.5295 2.3480 0.4451 6 7 0.3755 2.2777 1.0698 7 14 2.3352 4.0082 0.1553 8 1 1.9735 4.5047 -1.1967 9 1 1.8623 4.9734 1.1799 10 1 3.8102 3.8663 0.2523 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3648 -3.6177 0.0005 15 6 2.8182 -4.1393 -1.1966 16 6 3.7120 -5.1938 -1.1968 17 6 4.1610 -5.7194 0.0003 18 6 5.1403 -6.8649 0.0003 19 6 6.4213 -6.4405 -0.7207 20 6 5.4719 -7.2524 1.4427 21 6 4.5223 -8.0641 -0.7214 22 6 3.7120 -5.1940 1.1975 23 6 2.8140 -4.1430 1.1976 24 1 -0.3634 0.0390 1.0269 25 1 -0.3634 0.8698 -0.5473 26 1 -0.3633 -0.9089 -0.4797 27 1 -0.0581 3.0880 1.3801 28 1 0.7591 -2.5302 -0.8896 29 1 0.7585 -2.5299 0.8904 30 1 2.4710 -3.7257 -2.1320 31 1 4.0631 -5.6040 -2.1321 32 1 6.8616 -5.5862 -0.2065 33 1 7.1299 -7.2688 -0.7204 34 1 6.1854 -6.1641 -1.7483 35 1 4.5593 -7.5546 1.9566 36 1 6.1799 -8.0813 1.4427 37 1 5.9123 -6.3980 1.9565 38 1 4.2864 -7.7877 -1.7490 39 1 5.2308 -8.8924 -0.7218 40 1 3.6096 -8.3664 -0.2078 41 1 4.0631 -5.6044 2.1328 42 1 2.4635 -3.7324 2.1330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268838152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:56 Heat of formation + Delta-G solvation = -20.407520 kcal Electronic energy + Delta-G solvation = -21071.561751 eV Core-core repulsion = 18016.203046 eV Total energy + Delta-G solvation = -3055.358705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.76172 -38.34480 -36.31284 -34.56019 -31.86604 -31.15261 -30.78097 -27.40257 -27.28790 -27.22236 -25.96717 -24.15353 -22.02198 -21.86638 -19.16261 -18.73614 -16.82527 -16.27645 -15.92713 -15.26512 -14.69247 -14.53221 -14.27708 -14.12345 -13.98180 -13.57069 -13.48325 -13.13272 -12.68334 -12.35216 -12.17905 -11.94233 -11.79695 -11.72050 -11.48633 -11.40900 -11.28991 -11.12991 -10.96448 -10.92550 -10.84101 -10.43473 -10.34104 -10.30484 -10.15682 -8.99012 -8.50894 -8.46220 -8.01418 -7.64654 -6.27216 -3.83398 1.73217 1.81343 3.18926 3.26618 3.32246 3.95311 4.05804 4.21939 4.63660 4.75964 4.96412 5.03555 5.15037 5.28629 5.30020 5.34360 5.34919 5.49724 5.55308 5.69950 5.76225 5.77658 5.80699 5.85729 5.96077 5.98794 6.00944 6.04788 6.09762 6.24203 6.27620 6.32997 6.46342 6.49050 6.81630 6.91685 6.92664 7.09018 7.26156 7.39687 7.60061 8.17319 8.53615 9.23883 9.47650 10.04406 10.76282 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.003605 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.128090 B = 7765.034794 C = 8023.768000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.304 4.304 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.450 3.550 12 O -0.582 6.582 13 C -0.097 4.097 14 C -0.045 4.045 15 C -0.106 4.106 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.027 4.027 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.121 4.121 23 C -0.105 4.105 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -17.015 -1.987 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.432 4.432 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.195 1.195 11 C 0.237 3.763 12 O -0.466 6.466 13 C -0.138 4.138 14 C -0.046 4.046 15 C -0.124 4.124 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.027 4.027 19 C -0.195 4.195 20 C -0.200 4.200 21 C -0.193 4.193 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.155 -16.845 -1.901 17.244 hybrid contribution 0.063 1.102 -0.030 1.104 sum 3.218 -15.744 -1.931 16.185 Atomic orbital electron populations 1.21510 0.81174 0.98757 1.01658 1.43607 1.05500 1.04731 1.63173 1.19662 0.99080 0.83771 1.40657 0.88441 1.25321 0.96530 0.99981 0.95560 1.70001 1.16859 1.29063 1.36670 0.85940 0.79616 0.81218 0.77916 1.20359 1.20981 1.19457 1.19913 0.88069 0.84417 0.83858 1.90537 1.13859 1.87024 1.55197 1.20657 0.97234 0.92443 1.03428 1.19444 0.97066 0.94810 0.93234 1.20913 0.97748 0.96206 0.97495 1.20793 0.98250 0.97198 0.97177 1.19640 0.98144 0.97364 0.93311 1.19445 0.94027 0.93188 0.96069 1.21887 0.96092 1.01151 1.00413 1.21951 1.01335 1.01207 0.95510 1.21873 1.00485 0.96694 1.00293 1.21025 0.98155 0.97222 0.97501 1.20966 0.97595 0.96150 0.97578 0.92505 0.91225 0.95595 0.92340 0.89699 0.89500 0.86594 0.86782 0.92357 0.92735 0.92465 0.92344 0.92727 0.92188 0.92505 0.92721 0.92595 0.86190 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.52 59.85 0.51 3.05 16 2 N -0.45 -11.76 3.02 -122.19 -0.37 -12.13 16 3 C -0.30 -8.65 9.31 -14.93 -0.14 -8.79 16 4 H 0.10 2.92 7.39 -52.49 -0.39 2.53 16 5 C 0.03 0.77 5.12 -17.47 -0.09 0.68 16 6 N -0.89 -23.87 10.56 55.50 0.59 -23.29 16 7 Si 0.93 21.13 29.57 -169.99 -5.03 16.10 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.45 11.17 7.62 -10.98 -0.08 11.08 16 12 O -0.58 -16.59 15.72 5.55 0.09 -16.51 16 13 C -0.10 -1.83 4.35 -29.03 -0.13 -1.96 16 14 C -0.05 -0.82 4.37 -104.63 -0.46 -1.27 16 15 C -0.11 -1.76 9.70 -39.58 -0.38 -2.14 16 16 C -0.12 -1.70 8.71 -39.58 -0.34 -2.05 16 17 C -0.08 -1.18 4.76 -104.62 -0.50 -1.68 16 18 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 19 C -0.14 -1.46 8.29 37.16 0.31 -1.16 16 20 C -0.14 -1.40 7.13 37.16 0.27 -1.13 16 21 C -0.14 -1.28 8.29 37.16 0.31 -0.98 16 22 C -0.12 -1.80 8.98 -39.58 -0.36 -2.16 16 23 C -0.10 -1.78 9.70 -39.58 -0.38 -2.16 16 24 H 0.06 1.32 7.56 -51.93 -0.39 0.93 16 25 H 0.07 1.65 7.00 -51.93 -0.36 1.29 16 26 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.08 1.41 7.35 -51.93 -0.38 1.03 16 29 H 0.09 1.50 8.05 -51.92 -0.42 1.08 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.11 1.42 7.10 -52.49 -0.37 1.05 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 35 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 38 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.12 1.52 5.90 -52.49 -0.31 1.21 16 42 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.78 337.55 -7.84 -39.62 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.60 Total: 2.21 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.60 Total: -11.10 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.22 Total: -35.41 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.78 -7.84 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268838152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.212 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds