Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46981 * 2 1 4 4 C 1.52999 * 109.47306 * 119.99472 * 2 1 3 5 5 C 1.53010 * 109.46523 * 65.00100 * 4 2 1 6 6 C 1.53005 * 109.46802 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47226 * 300.00168 * 1 2 3 25 25 H 1.08997 * 109.46905 * 60.00060 * 1 2 3 26 26 H 1.08996 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47227 * 240.00344 * 2 1 3 28 28 H 1.08999 * 109.46864 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47074 * 300.00250 * 3 2 1 30 30 H 1.09002 * 109.46545 * 59.99847 * 3 2 1 31 31 H 1.09000 * 109.47256 * 305.00453 * 4 2 1 32 32 H 1.08994 * 109.47508 * 184.99983 * 4 2 1 33 33 H 1.09000 * 109.47066 * 60.00237 * 5 4 2 34 34 H 1.08994 * 109.47133 * 300.00112 * 5 4 2 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 5 4 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 5 4 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4370 7 7 1.7588 -4.3285 2.3780 8 6 2.1024 -5.1638 3.3784 9 8 2.7341 -4.7457 4.3295 10 6 1.7129 -6.5866 3.3187 11 6 0.9908 -7.0670 2.2195 12 6 0.6244 -8.3787 2.1625 13 6 0.9828 -9.2539 3.2068 14 6 0.6112 -10.6140 3.1493 15 1 1.1902 -11.3548 3.6806 16 6 -0.5098 -11.0035 2.4024 17 7 -1.3935 -10.1130 2.0379 18 14 -0.7395 -12.7958 1.9286 19 1 -0.8208 -13.6261 3.1571 20 1 -1.9937 -12.9445 1.1475 21 1 0.4130 -13.2418 1.1051 22 6 1.7139 -8.7669 4.3083 23 6 2.0706 -7.4523 4.3593 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0699 -2.6549 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 1.7115 -2.4574 3.3249 36 1 3.2322 -2.8398 2.4824 37 1 1.2552 -4.6621 1.6191 38 1 0.7206 -6.3964 1.4172 39 1 0.0639 -8.7474 1.3161 40 1 -2.1688 -10.3825 1.5209 41 1 1.9912 -9.4342 5.1110 42 1 2.6306 -7.0781 5.2035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270225983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -58.397577 kcal Electronic energy + Delta-G solvation = -20102.613850 eV Core-core repulsion = 17045.607773 eV Total energy + Delta-G solvation = -3057.006078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.10368 -37.48600 -36.93515 -34.47544 -33.85481 -31.38932 -29.93349 -29.43059 -27.40841 -26.53078 -25.13615 -22.18825 -21.53962 -20.83216 -20.24311 -19.41776 -17.51927 -16.75717 -15.92339 -15.60741 -15.27037 -14.82855 -14.35622 -14.00589 -13.91500 -13.62541 -13.40405 -13.16508 -12.71984 -12.47090 -12.32353 -12.11002 -11.91735 -11.90583 -11.66490 -11.37597 -11.27372 -11.20198 -10.98142 -10.88409 -10.72638 -10.65447 -10.58003 -10.05012 -9.54847 -9.35338 -8.94111 -8.55253 -7.71459 -7.52725 -7.02226 -4.59914 2.24735 2.93006 2.94442 2.98550 3.03978 3.74270 3.82368 3.89435 4.57697 4.58384 4.66801 4.72151 5.04622 5.13275 5.33603 5.40985 5.46749 5.54367 5.58289 5.60262 5.68653 5.76807 5.78378 5.95643 5.97258 6.02980 6.05507 6.14432 6.24711 6.29557 6.32800 6.77399 6.83493 6.96808 7.08097 7.14203 7.44309 7.66211 7.79928 7.86368 8.07885 8.27398 8.40387 8.63668 8.75860 9.10823 9.89946 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.002994 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.217263 B = 9349.974985 C =10242.949191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.123 3.877 7 N -0.743 5.743 8 C 0.570 3.430 9 O -0.577 6.577 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.238 4.238 23 C -0.023 4.023 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 12.818 -6.816 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.001 4.001 7 N -0.396 5.396 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.288 4.288 11 C -0.082 4.082 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.738 3.262 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.117 13.163 -6.262 14.620 hybrid contribution -0.551 -0.885 -0.632 1.219 sum 0.565 12.278 -6.894 14.092 Atomic orbital electron populations 1.21908 0.95258 1.02073 1.01538 1.21125 0.95973 0.96063 0.98447 1.21846 1.00920 0.96102 1.01625 1.21563 1.01065 0.94370 0.97944 1.21868 1.01775 0.95481 0.97962 1.21187 0.99688 0.81609 0.97600 1.45923 1.59855 1.09013 1.24818 1.18596 0.77650 0.86395 0.80877 1.90629 1.42522 1.78610 1.34166 1.18923 1.16477 0.91765 1.01614 1.20476 0.96541 0.95800 0.95414 1.20975 1.05587 0.92843 1.00264 1.17787 0.87465 0.93070 0.89148 1.19807 1.08861 0.93613 1.24876 0.89767 1.26092 0.94760 1.00476 0.93366 1.69734 1.07563 1.36493 1.25928 0.86257 0.78648 0.81554 0.79768 1.18676 1.20073 1.18493 1.20728 1.10483 0.94806 0.99774 1.20369 0.95136 0.93016 0.95684 0.92720 0.92981 0.92236 0.91228 0.92741 0.92866 0.92724 0.91672 0.91710 0.91429 0.91109 0.92257 0.92280 0.76827 0.89336 0.86198 0.90213 0.88369 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.95 37.16 0.33 -0.86 16 2 C -0.10 -0.78 2.92 -90.61 -0.26 -1.04 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.11 -1.00 4.68 -26.73 -0.13 -1.12 16 5 C -0.13 -1.39 5.08 -26.72 -0.14 -1.52 16 6 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 7 N -0.74 -12.69 5.50 -61.31 -0.34 -13.03 16 8 C 0.57 12.44 7.76 -12.43 -0.10 12.34 16 9 O -0.58 -14.13 16.32 5.29 0.09 -14.04 16 10 C -0.28 -6.58 5.89 -104.73 -0.62 -7.20 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 13 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 14 C -0.44 -11.08 9.05 -37.75 -0.34 -11.42 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 17 N -0.77 -18.58 10.95 55.56 0.61 -17.97 16 18 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 22 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 23 C -0.02 -0.55 9.52 -39.61 -0.38 -0.92 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.40 6.01 6.47 -40.82 -0.26 5.75 16 38 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 39 H 0.12 2.97 6.18 -52.48 -0.32 2.65 16 40 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 41 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -28.29 344.57 -9.19 -37.48 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.63 Total: 9.19 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.09 Total: -19.09 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.27 Total: -31.00 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.29 -9.19 -37.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270225983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds