Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46981 * 2 1 4 4 C 1.52999 * 109.47306 * 119.99472 * 2 1 3 5 5 C 1.53010 * 109.46523 * 65.00100 * 4 2 1 6 6 C 1.53005 * 109.46802 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46802 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47226 * 300.00168 * 1 2 3 25 25 H 1.08997 * 109.46905 * 60.00060 * 1 2 3 26 26 H 1.08996 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47227 * 240.00344 * 2 1 3 28 28 H 1.08999 * 109.46864 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47074 * 300.00250 * 3 2 1 30 30 H 1.09002 * 109.46545 * 59.99847 * 3 2 1 31 31 H 1.09000 * 109.47256 * 305.00453 * 4 2 1 32 32 H 1.08994 * 109.47508 * 184.99983 * 4 2 1 33 33 H 1.09000 * 109.47066 * 60.00237 * 5 4 2 34 34 H 1.08994 * 109.47133 * 300.00112 * 5 4 2 35 35 H 1.09000 * 109.47033 * 60.00319 * 6 5 4 36 36 H 1.09002 * 109.46906 * 300.00307 * 6 5 4 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1880 6 6 2.1458 -2.9168 2.4370 7 7 1.7588 -4.3285 2.3780 8 6 2.1024 -5.1638 3.3784 9 8 2.7341 -4.7457 4.3295 10 6 1.7129 -6.5866 3.3187 11 6 0.9908 -7.0670 2.2195 12 6 0.6244 -8.3787 2.1625 13 6 0.9828 -9.2539 3.2068 14 6 0.6112 -10.6140 3.1493 15 1 1.1902 -11.3548 3.6806 16 6 -0.5098 -11.0035 2.4024 17 7 -1.3935 -10.1130 2.0379 18 14 -0.7395 -12.7958 1.9286 19 1 -0.8208 -13.6261 3.1571 20 1 -1.9937 -12.9445 1.1475 21 1 0.4130 -13.2418 1.1051 22 6 1.7139 -8.7669 4.3083 23 6 2.0706 -7.4523 4.3593 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 2.0699 -2.6549 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 1.7115 -2.4574 3.3249 36 1 3.2322 -2.8398 2.4824 37 1 1.2552 -4.6621 1.6191 38 1 0.7206 -6.3964 1.4172 39 1 0.0639 -8.7474 1.3161 40 1 -2.1688 -10.3825 1.5209 41 1 1.9912 -9.4342 5.1110 42 1 2.6306 -7.0781 5.2035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270225983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -72.573455 kcal Electronic energy + Delta-G solvation = -20103.228563 eV Core-core repulsion = 17045.607773 eV Total energy + Delta-G solvation = -3057.620790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78222 -38.98689 -38.05147 -35.79997 -35.66271 -32.71278 -31.50746 -31.27444 -28.09147 -27.96190 -26.45049 -23.69750 -22.95528 -22.47522 -21.34602 -20.65941 -19.36373 -18.40015 -17.30960 -16.89831 -16.72889 -15.85339 -15.75505 -15.56843 -15.11238 -15.00252 -14.74245 -14.39062 -14.26569 -13.88656 -13.66738 -13.34592 -13.19845 -13.05993 -12.84895 -12.64099 -12.60689 -12.55708 -12.36046 -11.99925 -11.78856 -11.57217 -11.43071 -11.36827 -11.34916 -11.12145 -10.69048 -10.06259 -9.57724 -9.39860 -8.78537 -6.48515 0.43844 1.14543 1.39456 1.44826 1.52573 2.12326 2.18382 2.41534 2.79043 3.68686 3.77971 3.96413 4.03460 4.21039 4.22871 4.31539 4.40194 4.44209 4.54937 4.68962 4.74488 4.84203 4.90004 4.91899 4.97252 5.03513 5.05044 5.11540 5.15691 5.23418 5.25987 5.29866 5.36680 5.52429 5.56463 5.57256 5.61744 5.82100 5.94408 5.99159 6.22671 6.53752 6.71934 6.77137 6.88806 7.44212 8.16649 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.002994 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.217263 B = 9349.974985 C =10242.949191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.122 4.122 6 C 0.121 3.879 7 N -0.726 5.726 8 C 0.568 3.432 9 O -0.609 6.609 10 C -0.294 4.294 11 C -0.053 4.053 12 C -0.197 4.197 13 C 0.101 3.899 14 C -0.474 4.474 15 H 0.085 0.915 16 C 0.037 3.963 17 N -0.799 5.799 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.253 4.253 23 C -0.034 4.034 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 13.224 -8.447 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.002 4.002 7 N -0.378 5.378 8 C 0.362 3.638 9 O -0.494 6.494 10 C -0.298 4.298 11 C -0.072 4.072 12 C -0.216 4.216 13 C 0.098 3.902 14 C -0.501 4.501 15 H 0.103 0.897 16 C -0.182 4.182 17 N -0.423 5.423 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.182 1.182 22 C -0.272 4.272 23 C -0.054 4.054 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.478 13.607 -7.922 15.752 hybrid contribution -0.356 -0.913 -0.112 0.987 sum 0.122 12.693 -8.034 15.023 Atomic orbital electron populations 1.21917 0.95161 1.01929 1.01848 1.21106 0.96022 0.96445 0.97826 1.21838 1.01056 0.95570 1.01972 1.21548 1.01222 0.93355 0.98566 1.21805 1.02061 0.95928 0.96129 1.21386 0.99501 0.79948 0.99383 1.45810 1.58500 1.09784 1.23670 1.18452 0.77584 0.86334 0.81457 1.90608 1.44087 1.79030 1.35658 1.19203 1.16311 0.92760 1.01572 1.20734 0.95074 0.95548 0.95869 1.21023 1.06659 0.93806 1.00146 1.18150 0.88228 0.94014 0.89841 1.20087 1.09998 0.93622 1.26406 0.89659 1.26928 0.93735 1.04957 0.92539 1.69753 1.08019 1.38626 1.25859 0.85149 0.78936 0.75667 0.79462 1.18342 1.18758 1.18208 1.20868 1.11030 0.95269 1.00063 1.20519 0.95398 0.93172 0.96273 0.92856 0.92299 0.92582 0.90993 0.92559 0.92192 0.92747 0.91807 0.91563 0.90519 0.90461 0.92994 0.92804 0.75498 0.85733 0.86714 0.89164 0.87765 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.95 71.98 0.64 -1.43 16 2 C -0.10 -1.32 2.92 -10.79 -0.03 -1.35 16 3 C -0.15 -1.81 9.19 71.99 0.66 -1.15 16 4 C -0.11 -1.74 4.68 30.60 0.14 -1.60 16 5 C -0.12 -2.26 5.08 30.60 0.16 -2.10 16 6 C 0.12 3.26 5.67 86.38 0.49 3.75 16 7 N -0.73 -23.64 5.50 -466.14 -2.57 -26.21 16 8 C 0.57 24.48 7.76 86.72 0.67 25.16 16 9 O -0.61 -29.88 16.32 -4.00 -0.07 -29.95 16 10 C -0.29 -13.62 5.89 -19.94 -0.12 -13.74 16 11 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 12 C -0.20 -9.75 8.63 22.47 0.19 -9.55 16 13 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 14 C -0.47 -23.97 9.05 23.46 0.21 -23.76 16 15 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.73 5.15 85.35 0.44 2.17 16 17 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 18 Si 0.99 34.68 29.59 68.60 2.03 36.71 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 22 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 23 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.37 6.56 -2.39 -0.02 1.36 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.41 11.37 6.47 -92.71 -0.60 10.77 16 38 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 39 H 0.12 5.72 6.18 -2.91 -0.02 5.70 16 40 H 0.30 12.59 8.29 -92.70 -0.77 11.82 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -60.85 344.57 4.03 -56.83 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.40 Total: 35.01 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.99 Total: -34.53 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -2.33 Total: -64.07 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -60.85 4.03 -56.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270225983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.747 kcal (2) G-P(sol) polarization free energy of solvation -60.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds