Wall clock time and date at job start Mon Mar 30 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00153 * 2 1 4 4 C 1.53002 * 109.47459 * 269.99727 * 3 2 1 5 5 C 1.53003 * 109.46945 * 60.00276 * 4 3 2 6 6 C 1.52993 * 109.47323 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47014 * 300.00564 * 4 3 2 8 8 C 1.34782 * 119.99719 * 179.97438 * 2 1 3 9 9 O 1.21585 * 119.99890 * 183.68623 * 8 2 1 10 10 C 1.47641 * 120.00073 * 3.69032 * 8 2 1 11 11 C 1.40023 * 119.89522 * 328.77300 * 10 8 2 12 12 C 1.36316 * 120.10535 * 180.25481 * 11 10 8 13 13 C 1.40889 * 119.88861 * 359.47309 * 12 11 10 14 14 C 1.41109 * 120.09874 * 180.29530 * 13 12 11 15 15 H 1.08004 * 120.00147 * 334.64971 * 14 13 12 16 16 C 1.40227 * 119.99781 * 154.64312 * 14 13 12 17 17 N 1.30642 * 120.00077 * 342.07237 * 16 14 13 18 18 Si 1.86803 * 119.99917 * 162.07309 * 16 14 13 19 19 H 1.48501 * 109.47023 * 94.98060 * 18 16 14 20 20 H 1.48498 * 109.47273 * 214.98281 * 18 16 14 21 21 H 1.48506 * 109.47309 * 334.98436 * 18 16 14 22 22 C 1.40887 * 119.79759 * 0.27526 * 13 12 11 23 23 C 1.36317 * 119.89016 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47357 * 274.35098 * 1 2 3 25 25 H 1.09006 * 109.46697 * 34.34788 * 1 2 3 26 26 H 1.09001 * 109.47529 * 154.34274 * 1 2 3 27 27 H 1.08999 * 109.47672 * 30.00135 * 3 2 1 28 28 H 1.09006 * 109.47215 * 150.00037 * 3 2 1 29 29 H 1.09000 * 109.46969 * 59.99471 * 5 4 3 30 30 H 1.08990 * 109.47389 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47168 * 300.00404 * 5 4 3 32 32 H 1.09000 * 109.47562 * 60.00676 * 6 4 3 33 33 H 1.09003 * 109.47593 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47325 * 300.00196 * 6 4 3 35 35 H 1.08999 * 109.47515 * 59.99483 * 7 4 3 36 36 H 1.09003 * 109.47095 * 179.97438 * 7 4 3 37 37 H 1.09000 * 109.47099 * 299.98851 * 7 4 3 38 38 H 1.08002 * 119.94510 * 0.02918 * 11 10 8 39 39 H 1.07993 * 120.05409 * 179.74458 * 12 11 10 40 40 H 0.97006 * 119.99887 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.05522 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.94488 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 1.1157 1.8934 -2.1638 6 6 3.2182 3.0350 -1.4425 7 6 3.2794 0.6440 -2.1637 8 6 2.1389 -1.1673 0.0005 9 8 3.3528 -1.1684 0.0682 10 6 1.4029 -2.4446 -0.0812 11 6 0.1219 -2.5487 0.4746 12 6 -0.5593 -3.7275 0.4061 13 6 0.0231 -4.8388 -0.2349 14 6 -0.6807 -6.0593 -0.3137 15 1 -1.4366 -6.2953 0.4208 16 6 -0.3988 -6.9657 -1.3459 17 7 0.2358 -6.5624 -2.4142 18 14 -0.9309 -8.7498 -1.1933 19 1 -2.2409 -8.9351 -1.8676 20 1 0.0835 -9.6253 -1.8333 21 1 -1.0583 -9.1074 0.2424 22 6 1.3100 -4.7275 -0.7972 23 6 1.9861 -3.5464 -0.7184 24 1 -0.3634 0.0780 1.0247 25 1 -0.3633 0.8485 -0.5799 26 1 -0.3634 -0.9263 -0.4450 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 0.5267 2.6530 -1.6499 30 1 1.2974 2.2076 -3.1915 31 1 0.5706 0.9495 -2.1638 32 1 4.1706 2.9042 -0.9288 33 1 3.3996 3.3499 -2.4701 34 1 2.6295 3.7949 -0.9285 35 1 2.7344 -0.3000 -2.1637 36 1 3.4607 0.9585 -3.1915 37 1 4.2318 0.5137 -1.6500 38 1 -0.3256 -1.6948 0.9614 39 1 -1.5456 -3.8081 0.8387 40 1 0.4311 -7.1895 -3.1280 41 1 1.7603 -5.5766 -1.2899 42 1 2.9725 -3.4601 -1.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270294898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:51 Heat of formation + Delta-G solvation = -17.066604 kcal Electronic energy + Delta-G solvation = -21661.721577 eV Core-core repulsion = 18606.507745 eV Total energy + Delta-G solvation = -3055.213832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83001 -37.58497 -36.47701 -34.42441 -33.65991 -30.17215 -29.70557 -27.72562 -27.10211 -26.94230 -26.12481 -24.75247 -21.47300 -21.04231 -19.25235 -18.39300 -17.56338 -16.34360 -15.74372 -15.55216 -15.36338 -14.40019 -14.26822 -13.73554 -13.58626 -13.27995 -13.10749 -12.93558 -12.58073 -12.29435 -12.19975 -12.03472 -11.92098 -11.59619 -11.44067 -11.30245 -11.27926 -11.06126 -10.97232 -10.86379 -10.56659 -10.53229 -10.42892 -9.97941 -9.46160 -9.30290 -8.86762 -8.13528 -7.64190 -7.49078 -6.98588 -4.56361 2.32544 2.92842 2.97231 3.02162 3.03907 3.58681 3.76810 3.84430 4.53424 4.89220 4.91073 5.06296 5.40397 5.46024 5.54850 5.58229 5.64243 5.72608 5.78686 5.83954 5.89633 6.01647 6.04038 6.11661 6.14502 6.19858 6.21855 6.28935 6.33762 6.49654 6.68887 6.82875 6.85338 7.04346 7.08144 7.15159 7.46953 7.63745 7.80908 7.89258 8.06665 8.16692 8.45679 8.67087 8.78789 9.05841 9.93923 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.004054 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.385162 B = 6904.793720 C = 7074.751940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.619 5.619 3 C 0.128 3.872 4 C -0.086 4.086 5 C -0.143 4.143 6 C -0.137 4.137 7 C -0.133 4.133 8 C 0.575 3.425 9 O -0.565 6.565 10 C -0.278 4.278 11 C -0.067 4.067 12 C -0.237 4.237 13 C 0.128 3.872 14 C -0.448 4.448 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.773 5.773 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.179 4.179 23 C -0.040 4.040 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.286 0.714 41 H 0.119 0.881 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 11.253 0.255 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.352 5.352 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.200 4.200 6 C -0.195 4.195 7 C -0.190 4.190 8 C 0.370 3.630 9 O -0.445 6.445 10 C -0.283 4.283 11 C -0.085 4.085 12 C -0.257 4.257 13 C 0.125 3.875 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.396 5.396 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.198 4.198 23 C -0.059 4.059 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.005 11.174 0.057 11.174 hybrid contribution -0.382 -0.731 -0.119 0.833 sum -0.377 10.442 -0.062 10.449 Atomic orbital electron populations 1.22529 0.80489 1.04292 1.00740 1.47648 1.06471 1.05562 1.75568 1.21377 0.97649 0.85141 0.95369 1.20964 0.95886 0.95607 0.96235 1.21981 0.96584 1.01812 0.99625 1.21798 0.99962 0.96088 1.01619 1.21814 1.00163 0.98405 0.98612 1.18659 0.86774 0.83532 0.74027 1.90638 1.14376 1.87628 1.51887 1.18893 0.98028 0.93873 1.17483 1.20951 0.93121 0.97104 0.97372 1.20697 1.00062 0.93524 1.11382 1.17765 0.90741 0.91630 0.87398 1.19795 1.17958 1.00422 1.09410 0.89867 1.26069 0.93171 1.01295 0.94019 1.69747 1.28591 1.37038 1.04272 0.86251 0.79205 0.81003 0.80121 1.19317 1.19762 1.18137 1.20968 0.95277 0.97115 1.06488 1.20397 0.97343 0.92299 0.95892 0.93358 0.92144 0.88115 0.91550 0.90214 0.93124 0.93105 0.91728 0.92606 0.92694 0.92928 0.92282 0.93817 0.92224 0.87401 0.88568 0.90299 0.86361 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 7.82 59.85 0.47 1.35 16 2 N -0.62 -10.35 2.40 -182.77 -0.44 -10.78 16 3 C 0.13 1.82 4.62 -4.04 -0.02 1.80 16 4 C -0.09 -1.11 0.84 -154.51 -0.13 -1.24 16 5 C -0.14 -1.70 7.23 37.16 0.27 -1.43 16 6 C -0.14 -1.44 8.47 37.15 0.31 -1.13 16 7 C -0.13 -2.06 7.20 37.16 0.27 -1.80 16 8 C 0.57 12.09 5.72 -12.42 -0.07 12.02 16 9 O -0.56 -13.21 14.79 5.29 0.08 -13.13 16 10 C -0.28 -6.32 5.50 -104.73 -0.58 -6.90 16 11 C -0.07 -1.42 7.36 -39.61 -0.29 -1.71 16 12 C -0.24 -5.46 9.73 -39.27 -0.38 -5.84 16 13 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 14 C -0.45 -11.20 9.04 -37.75 -0.34 -11.54 16 15 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 16 C 0.08 1.79 5.13 -17.31 -0.09 1.70 16 17 N -0.77 -18.95 11.00 55.56 0.61 -18.34 16 18 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 C -0.18 -4.59 8.63 -39.27 -0.34 -4.92 16 23 C -0.04 -0.98 9.53 -39.61 -0.38 -1.35 16 24 H 0.05 0.62 7.39 -51.93 -0.38 0.23 16 25 H 0.06 0.71 5.87 -51.93 -0.30 0.41 16 26 H 0.10 1.63 4.75 -51.93 -0.25 1.38 16 27 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.08 1.26 7.37 -51.93 -0.38 0.88 16 29 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.87 5.92 -51.93 -0.31 0.56 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.09 6.20 -51.93 -0.32 0.77 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.99 7.81 -51.93 -0.41 0.59 16 38 H 0.11 1.92 4.71 -52.49 -0.25 1.68 16 39 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 40 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 41 H 0.12 3.11 6.21 -52.49 -0.33 2.78 16 42 H 0.09 2.27 7.93 -52.49 -0.42 1.85 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -27.71 326.80 -8.01 -35.72 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.27 Total: 7.46 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.89 Total: -18.34 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.17 Total: -29.13 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.71 -8.01 -35.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270294898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.656 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds