Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00153 * 2 1 4 4 C 1.53002 * 109.47459 * 269.99727 * 3 2 1 5 5 C 1.53003 * 109.46945 * 60.00276 * 4 3 2 6 6 C 1.52993 * 109.47323 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47014 * 300.00564 * 4 3 2 8 8 C 1.34782 * 119.99719 * 179.97438 * 2 1 3 9 9 O 1.21585 * 119.99890 * 183.68623 * 8 2 1 10 10 C 1.47641 * 120.00073 * 3.69032 * 8 2 1 11 11 C 1.40023 * 119.89522 * 328.77300 * 10 8 2 12 12 C 1.36316 * 120.10535 * 180.25481 * 11 10 8 13 13 C 1.40889 * 119.88861 * 359.47309 * 12 11 10 14 14 C 1.41109 * 120.09874 * 180.29530 * 13 12 11 15 15 H 1.08004 * 120.00147 * 334.64971 * 14 13 12 16 16 C 1.40227 * 119.99781 * 154.64312 * 14 13 12 17 17 N 1.30642 * 120.00077 * 342.07237 * 16 14 13 18 18 Si 1.86803 * 119.99917 * 162.07309 * 16 14 13 19 19 H 1.48501 * 109.47023 * 94.98060 * 18 16 14 20 20 H 1.48498 * 109.47273 * 214.98281 * 18 16 14 21 21 H 1.48506 * 109.47309 * 334.98436 * 18 16 14 22 22 C 1.40887 * 119.79759 * 0.27526 * 13 12 11 23 23 C 1.36317 * 119.89016 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47357 * 274.35098 * 1 2 3 25 25 H 1.09006 * 109.46697 * 34.34788 * 1 2 3 26 26 H 1.09001 * 109.47529 * 154.34274 * 1 2 3 27 27 H 1.08999 * 109.47672 * 30.00135 * 3 2 1 28 28 H 1.09006 * 109.47215 * 150.00037 * 3 2 1 29 29 H 1.09000 * 109.46969 * 59.99471 * 5 4 3 30 30 H 1.08990 * 109.47389 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47168 * 300.00404 * 5 4 3 32 32 H 1.09000 * 109.47562 * 60.00676 * 6 4 3 33 33 H 1.09003 * 109.47593 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47325 * 300.00196 * 6 4 3 35 35 H 1.08999 * 109.47515 * 59.99483 * 7 4 3 36 36 H 1.09003 * 109.47095 * 179.97438 * 7 4 3 37 37 H 1.09000 * 109.47099 * 299.98851 * 7 4 3 38 38 H 1.08002 * 119.94510 * 0.02918 * 11 10 8 39 39 H 1.07993 * 120.05409 * 179.74458 * 12 11 10 40 40 H 0.97006 * 119.99887 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.05522 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.94488 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 1.1157 1.8934 -2.1638 6 6 3.2182 3.0350 -1.4425 7 6 3.2794 0.6440 -2.1637 8 6 2.1389 -1.1673 0.0005 9 8 3.3528 -1.1684 0.0682 10 6 1.4029 -2.4446 -0.0812 11 6 0.1219 -2.5487 0.4746 12 6 -0.5593 -3.7275 0.4061 13 6 0.0231 -4.8388 -0.2349 14 6 -0.6807 -6.0593 -0.3137 15 1 -1.4366 -6.2953 0.4208 16 6 -0.3988 -6.9657 -1.3459 17 7 0.2358 -6.5624 -2.4142 18 14 -0.9309 -8.7498 -1.1933 19 1 -2.2409 -8.9351 -1.8676 20 1 0.0835 -9.6253 -1.8333 21 1 -1.0583 -9.1074 0.2424 22 6 1.3100 -4.7275 -0.7972 23 6 1.9861 -3.5464 -0.7184 24 1 -0.3634 0.0780 1.0247 25 1 -0.3633 0.8485 -0.5799 26 1 -0.3634 -0.9263 -0.4450 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 0.5267 2.6530 -1.6499 30 1 1.2974 2.2076 -3.1915 31 1 0.5706 0.9495 -2.1638 32 1 4.1706 2.9042 -0.9288 33 1 3.3996 3.3499 -2.4701 34 1 2.6295 3.7949 -0.9285 35 1 2.7344 -0.3000 -2.1637 36 1 3.4607 0.9585 -3.1915 37 1 4.2318 0.5137 -1.6500 38 1 -0.3256 -1.6948 0.9614 39 1 -1.5456 -3.8081 0.8387 40 1 0.4311 -7.1895 -3.1280 41 1 1.7603 -5.5766 -1.2899 42 1 2.9725 -3.4601 -1.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270294898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = -30.784927 kcal Electronic energy + Delta-G solvation = -21662.316448 eV Core-core repulsion = 18606.507745 eV Total energy + Delta-G solvation = -3055.808703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32433 -39.21236 -37.94586 -35.98225 -35.27283 -31.96790 -31.50276 -28.86918 -28.39706 -28.09408 -27.52622 -26.22901 -23.19244 -22.84640 -20.72590 -19.62050 -19.38507 -17.94719 -17.16126 -17.13227 -16.83247 -15.95761 -15.50431 -15.24485 -15.00724 -14.73417 -14.49979 -14.29691 -14.14708 -13.86426 -13.64382 -13.33585 -13.23113 -12.99311 -12.86845 -12.70615 -12.60680 -12.50326 -12.40928 -12.19900 -11.91697 -11.72919 -11.64003 -11.54380 -11.25454 -11.08400 -10.53541 -9.60638 -9.41705 -9.31317 -8.76702 -6.45612 0.53864 1.14794 1.37662 1.42640 1.54235 2.07781 2.16412 2.29103 2.76037 3.67796 3.81525 3.86765 4.02480 4.11145 4.23625 4.39132 4.49607 4.55202 4.62411 4.65090 4.75994 4.78722 4.90630 4.92034 4.96918 4.98218 5.03528 5.06518 5.08987 5.18971 5.21297 5.28537 5.32194 5.44395 5.50580 5.60772 5.76374 5.81449 6.00495 6.02989 6.22559 6.56559 6.59689 6.79822 6.91883 7.45325 8.18822 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.004054 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.385162 B = 6904.793720 C = 7074.751940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.609 5.609 3 C 0.123 3.877 4 C -0.083 4.083 5 C -0.140 4.140 6 C -0.131 4.131 7 C -0.128 4.128 8 C 0.572 3.428 9 O -0.598 6.598 10 C -0.287 4.287 11 C -0.052 4.052 12 C -0.248 4.248 13 C 0.100 3.900 14 C -0.479 4.479 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.807 5.807 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.255 1.255 22 C -0.200 4.200 23 C -0.054 4.054 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.149 0.851 39 H 0.115 0.885 40 H 0.294 0.706 41 H 0.100 0.900 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 13.335 0.916 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.340 5.340 3 C 0.001 3.999 4 C -0.084 4.084 5 C -0.197 4.197 6 C -0.189 4.189 7 C -0.186 4.186 8 C 0.366 3.634 9 O -0.482 6.482 10 C -0.291 4.291 11 C -0.070 4.070 12 C -0.267 4.267 13 C 0.097 3.903 14 C -0.506 4.506 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.431 5.431 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.178 1.178 22 C -0.220 4.220 23 C -0.073 4.073 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.870 13.304 0.717 13.454 hybrid contribution 0.228 -1.234 -0.354 1.303 sum -1.642 12.071 0.363 12.187 Atomic orbital electron populations 1.22683 0.78537 1.04659 1.02703 1.47628 1.07727 1.05106 1.73555 1.21636 0.97245 0.84514 0.96498 1.20968 0.96557 0.95854 0.95061 1.21952 0.95715 1.01679 1.00328 1.21748 0.99695 0.94900 1.02525 1.21765 0.99212 0.97870 0.99741 1.18442 0.86289 0.84377 0.74296 1.90616 1.15702 1.88223 1.53657 1.19201 0.98858 0.94354 1.16725 1.21305 0.92052 0.97722 0.95951 1.20972 1.01030 0.93412 1.11284 1.18118 0.90831 0.93048 0.88258 1.20098 1.18866 1.01295 1.10377 0.89212 1.26963 0.92761 1.05432 0.93098 1.69803 1.29404 1.38815 1.05099 0.85131 0.79076 0.75117 0.80120 1.18198 1.19257 1.17846 1.20871 0.96108 0.97038 1.07974 1.20457 0.97138 0.93062 0.96691 0.90765 0.88903 0.90263 0.87683 0.92187 0.90386 0.92426 0.93571 0.93143 0.91859 0.90535 0.95937 0.92492 0.94242 0.83358 0.86660 0.89547 0.88202 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.39 7.82 127.77 1.00 2.39 16 2 N -0.61 -19.26 2.40 -850.41 -2.04 -21.30 16 3 C 0.12 3.20 4.62 86.38 0.40 3.60 16 4 C -0.08 -1.97 0.84 -52.18 -0.04 -2.02 16 5 C -0.14 -2.86 7.23 71.98 0.52 -2.34 16 6 C -0.13 -2.34 8.47 71.98 0.61 -1.73 16 7 C -0.13 -4.02 7.20 71.98 0.52 -3.51 16 8 C 0.57 24.25 5.72 86.73 0.50 24.74 16 9 O -0.60 -28.93 14.79 -3.98 -0.06 -28.99 16 10 C -0.29 -13.28 5.50 -19.93 -0.11 -13.39 16 11 C -0.05 -2.17 7.36 22.25 0.16 -2.00 16 12 C -0.25 -11.37 9.73 22.47 0.22 -11.15 16 13 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 14 C -0.48 -24.47 9.04 23.46 0.21 -24.26 16 15 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 16 C 0.04 1.71 5.13 85.35 0.44 2.15 16 17 N -0.81 -40.95 11.00 21.87 0.24 -40.71 16 18 Si 0.99 36.02 29.60 68.60 2.03 38.05 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 21 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 22 C -0.20 -10.85 8.63 22.47 0.19 -10.66 16 23 C -0.05 -2.79 9.53 22.25 0.21 -2.58 16 24 H 0.07 1.53 7.39 -2.39 -0.02 1.51 16 25 H 0.09 1.76 5.87 -2.38 -0.01 1.75 16 26 H 0.08 2.38 4.75 -2.39 -0.01 2.37 16 27 H 0.11 1.96 8.07 -2.39 -0.02 1.94 16 28 H 0.06 1.83 7.37 -2.38 -0.02 1.81 16 29 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.12 5.92 -2.39 -0.01 1.10 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.02 0.84 6.20 -2.39 -0.01 0.83 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.36 7.81 -2.39 -0.02 1.34 16 38 H 0.15 4.85 4.71 -2.91 -0.01 4.84 16 39 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.29 13.38 8.29 -92.70 -0.77 12.61 16 41 H 0.10 5.64 6.21 -2.91 -0.02 5.62 16 42 H 0.08 4.38 7.93 -2.91 -0.02 4.36 16 Total: -1.00 -63.97 326.80 5.89 -58.08 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 1.01 Total: 30.45 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.71 Total: -35.59 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -1.80 Total: -62.01 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.06 Total: -28.99 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -63.97 5.89 -58.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270294898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.299 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds