Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.53002 * 109.46960 * 303.02916 * 3 2 1 5 5 C 1.52999 * 109.47328 * 296.49215 * 4 3 2 6 6 C 1.52992 * 109.47498 * 63.03466 * 3 2 1 7 7 N 1.46494 * 109.47273 * 64.99843 * 6 3 2 8 8 C 1.34781 * 120.00231 * 179.97438 * 7 6 3 9 9 O 1.21592 * 119.99729 * 0.02562 * 8 7 6 10 10 C 1.47641 * 120.00242 * 179.97438 * 8 7 6 11 11 C 1.40012 * 119.89549 * 0.25558 * 10 8 7 12 12 C 1.36310 * 120.10665 * 180.25694 * 11 10 8 13 13 C 1.40888 * 119.89435 * 359.46831 * 12 11 10 14 14 C 1.41108 * 120.10772 * 180.30286 * 13 12 11 15 15 H 1.08001 * 119.99696 * 334.78191 * 14 13 12 16 16 C 1.40223 * 120.00170 * 154.78822 * 14 13 12 17 17 N 1.30651 * 119.99984 * 341.18331 * 16 14 13 18 18 Si 1.86798 * 120.00019 * 161.18940 * 16 14 13 19 19 H 1.48506 * 109.47207 * 94.97870 * 18 16 14 20 20 H 1.48502 * 109.47191 * 214.97508 * 18 16 14 21 21 H 1.48496 * 109.47382 * 334.97924 * 18 16 14 22 22 C 1.40895 * 119.79108 * 0.27694 * 13 12 11 23 23 C 1.36317 * 119.88815 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47234 * 300.57182 * 1 2 3 25 25 H 1.09007 * 109.46816 * 60.56260 * 1 2 3 26 26 H 1.08994 * 109.47617 * 180.56070 * 1 2 3 27 27 H 1.08999 * 109.47109 * 239.99628 * 2 1 3 28 28 H 1.09001 * 109.46661 * 119.99492 * 2 1 3 29 29 H 1.09005 * 109.47016 * 183.03519 * 3 2 1 30 30 H 1.09004 * 109.47091 * 56.49438 * 4 3 2 31 31 H 1.08999 * 109.47221 * 176.49203 * 4 3 2 32 32 H 1.08993 * 109.47490 * 64.66262 * 5 4 3 33 33 H 1.09001 * 109.47225 * 184.66543 * 5 4 3 34 34 H 1.09007 * 109.46937 * 304.66162 * 5 4 3 35 35 H 1.09002 * 109.47293 * 304.99799 * 6 3 2 36 36 H 1.09004 * 109.47219 * 184.99660 * 6 3 2 37 37 H 0.96997 * 120.00442 * 0.02562 * 7 6 3 38 38 H 1.08005 * 119.94510 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.05360 * 179.74394 * 12 11 10 40 40 H 0.97001 * 119.99940 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.05522 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.94367 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4687 2.1854 -1.2094 5 6 1.9863 1.5393 -2.4961 6 6 1.5934 2.1414 1.2856 7 7 2.2360 1.5032 2.4370 8 6 1.9896 1.9553 3.6826 9 8 1.2335 2.8926 3.8506 10 6 2.6368 1.3117 4.8430 11 6 3.5104 0.2353 4.6467 12 6 4.1062 -0.3654 5.7154 13 6 3.8506 0.1056 7.0184 14 6 4.4699 -0.5089 8.1274 15 1 4.7932 -1.5374 8.0640 16 6 4.6655 0.2159 9.3118 17 7 4.6262 1.5216 9.2927 18 14 4.9824 -0.6856 10.9169 19 1 6.4458 -0.7804 11.1509 20 1 4.3494 0.0580 12.0356 21 1 4.4039 -2.0512 10.8403 22 6 2.9749 1.1925 7.2105 23 6 2.3789 1.7829 6.1360 24 1 -0.3633 0.5227 0.8848 25 1 -0.3633 0.5051 -0.8951 26 1 -0.3634 -1.0275 0.0101 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1287 1.4430 -0.0544 30 1 0.3802 2.1313 -1.1881 31 1 1.7813 3.2290 -1.1757 32 1 1.6049 0.5209 -2.5702 33 1 1.6468 2.1178 -3.3552 34 1 3.0760 1.5189 -2.4795 35 1 0.5106 2.0633 1.3843 36 1 1.8797 3.1924 1.2461 37 1 2.8395 0.7557 2.3030 38 1 3.7096 -0.1220 3.6471 39 1 4.7767 -1.1983 5.5633 40 1 4.7618 2.0230 10.1120 41 1 2.7761 1.5573 8.2074 42 1 1.7072 2.6158 6.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270318763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -51.762940 kcal Electronic energy + Delta-G solvation = -20671.024760 eV Core-core repulsion = 17614.306382 eV Total energy + Delta-G solvation = -3056.718378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.30655 -37.81734 -36.85089 -33.88111 -33.51392 -31.23445 -30.21460 -29.59598 -28.20718 -25.88838 -24.31205 -23.31745 -21.76654 -20.77483 -19.65059 -19.08812 -17.51722 -16.87077 -16.00937 -15.48277 -15.27176 -15.09667 -14.20253 -13.98540 -13.80616 -13.54901 -13.18226 -13.07181 -12.84909 -12.57642 -12.21937 -12.15326 -12.08291 -11.83855 -11.62528 -11.38239 -11.24997 -11.20362 -10.96800 -10.68840 -10.57616 -10.53663 -10.45082 -10.05130 -9.52705 -9.30984 -8.94007 -8.52058 -7.68446 -7.54817 -7.01620 -4.58313 2.26343 2.91154 2.96247 3.01980 3.04488 3.75404 3.84175 3.90992 4.58956 4.66891 4.71032 4.77158 5.10552 5.18751 5.28039 5.44354 5.54626 5.58471 5.60811 5.67749 5.75972 5.84383 5.86737 5.97166 5.99171 6.06112 6.15456 6.17096 6.22689 6.30464 6.41864 6.81829 6.85212 7.01266 7.07917 7.12512 7.45389 7.63277 7.80128 7.89483 8.06867 8.29300 8.44327 8.64319 8.77047 9.12504 9.91065 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003204 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.196975 B = 8738.097250 C = 9035.942210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.120 4.120 5 C -0.151 4.151 6 C 0.125 3.875 7 N -0.741 5.741 8 C 0.570 3.430 9 O -0.575 6.575 10 C -0.283 4.283 11 C -0.049 4.049 12 C -0.235 4.235 13 C 0.129 3.871 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.769 5.769 18 Si 0.912 3.088 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.183 4.183 23 C -0.036 4.036 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.287 0.713 41 H 0.118 0.882 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -2.574 -13.998 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.119 4.119 4 C -0.158 4.158 5 C -0.209 4.209 6 C 0.001 3.999 7 N -0.394 5.394 8 C 0.364 3.636 9 O -0.457 6.457 10 C -0.287 4.287 11 C -0.068 4.068 12 C -0.255 4.255 13 C 0.126 3.874 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.392 5.392 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.202 4.202 23 C -0.055 4.055 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.682 -13.742 14.201 hybrid contribution 0.591 -0.632 0.648 1.081 sum -2.571 -2.314 -13.094 13.543 Atomic orbital electron populations 1.21888 0.95884 1.01518 1.02128 1.21559 0.96423 0.95882 1.01935 1.21449 1.00681 0.95548 0.94262 1.21546 1.01135 0.99345 0.93724 1.21790 1.01133 1.00866 0.97066 1.21282 0.97841 0.96466 0.84276 1.45915 1.50141 1.37425 1.05941 1.18596 0.80168 0.82168 0.82635 1.90635 1.38927 1.30097 1.86035 1.18925 1.11772 1.05596 0.92456 1.20352 0.95195 0.94570 0.96698 1.20658 1.06919 1.05207 0.92686 1.17772 0.87894 0.90056 0.91698 1.19815 1.32427 0.99281 0.95728 0.89757 1.26100 0.92585 0.94678 1.01351 1.69758 1.31707 1.07222 1.30472 0.86234 0.79391 0.80853 0.80017 1.19273 1.19708 1.18097 1.20974 1.00498 1.00893 0.97853 1.20476 0.96606 0.96898 0.91529 0.92146 0.92523 0.93017 0.91824 0.91761 0.90681 0.91290 0.91864 0.92507 0.92942 0.92771 0.91777 0.92344 0.76970 0.89360 0.88522 0.90174 0.86373 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.21 37.16 0.34 -1.21 16 2 C -0.12 -1.18 5.26 -26.73 -0.14 -1.32 16 3 C -0.10 -1.04 2.22 -90.62 -0.20 -1.24 16 4 C -0.12 -1.06 5.10 -26.73 -0.14 -1.19 16 5 C -0.15 -1.15 9.51 37.16 0.35 -0.79 16 6 C 0.13 1.76 4.90 -4.05 -0.02 1.74 16 7 N -0.74 -12.30 5.20 -61.32 -0.32 -12.62 16 8 C 0.57 12.33 7.76 -12.42 -0.10 12.24 16 9 O -0.57 -14.14 16.32 5.28 0.09 -14.06 16 10 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 11 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 12 C -0.24 -5.46 9.73 -39.27 -0.38 -5.85 16 13 C 0.13 3.31 5.57 -106.80 -0.59 2.71 16 14 C -0.44 -11.12 9.04 -37.75 -0.34 -11.46 16 15 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 16 C 0.07 1.77 5.11 -17.31 -0.09 1.68 16 17 N -0.77 -18.95 11.05 55.56 0.61 -18.33 16 18 Si 0.91 17.46 29.60 -169.99 -5.03 12.42 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 C -0.18 -4.72 8.63 -39.27 -0.34 -5.06 16 23 C -0.04 -0.89 9.52 -39.61 -0.38 -1.26 16 24 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 25 H 0.06 0.49 6.33 -51.92 -0.33 0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.55 6.78 -51.93 -0.35 0.19 16 28 H 0.06 0.69 7.11 -51.93 -0.37 0.32 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.60 6.19 -51.93 -0.32 0.28 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.41 6.83 -51.93 -0.35 0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.95 6.26 -51.93 -0.33 0.62 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 5.78 5.65 -40.82 -0.23 5.55 16 38 H 0.09 1.55 6.37 -52.48 -0.33 1.21 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 41 H 0.12 3.11 6.23 -52.49 -0.33 2.79 16 42 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -28.47 335.30 -8.79 -37.26 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.18 Total: 9.90 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.01 Total: -19.63 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.29 Total: -30.96 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.47 -8.79 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270318763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.503 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds