Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.53002 * 109.46960 * 303.02916 * 3 2 1 5 5 C 1.52999 * 109.47328 * 296.49215 * 4 3 2 6 6 C 1.52992 * 109.47498 * 63.03466 * 3 2 1 7 7 N 1.46494 * 109.47273 * 64.99843 * 6 3 2 8 8 C 1.34781 * 120.00231 * 179.97438 * 7 6 3 9 9 O 1.21592 * 119.99729 * 0.02562 * 8 7 6 10 10 C 1.47641 * 120.00242 * 179.97438 * 8 7 6 11 11 C 1.40012 * 119.89549 * 0.25558 * 10 8 7 12 12 C 1.36310 * 120.10665 * 180.25694 * 11 10 8 13 13 C 1.40888 * 119.89435 * 359.46831 * 12 11 10 14 14 C 1.41108 * 120.10772 * 180.30286 * 13 12 11 15 15 H 1.08001 * 119.99696 * 334.78191 * 14 13 12 16 16 C 1.40223 * 120.00170 * 154.78822 * 14 13 12 17 17 N 1.30651 * 119.99984 * 341.18331 * 16 14 13 18 18 Si 1.86798 * 120.00019 * 161.18940 * 16 14 13 19 19 H 1.48506 * 109.47207 * 94.97870 * 18 16 14 20 20 H 1.48502 * 109.47191 * 214.97508 * 18 16 14 21 21 H 1.48496 * 109.47382 * 334.97924 * 18 16 14 22 22 C 1.40895 * 119.79108 * 0.27694 * 13 12 11 23 23 C 1.36317 * 119.88815 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47234 * 300.57182 * 1 2 3 25 25 H 1.09007 * 109.46816 * 60.56260 * 1 2 3 26 26 H 1.08994 * 109.47617 * 180.56070 * 1 2 3 27 27 H 1.08999 * 109.47109 * 239.99628 * 2 1 3 28 28 H 1.09001 * 109.46661 * 119.99492 * 2 1 3 29 29 H 1.09005 * 109.47016 * 183.03519 * 3 2 1 30 30 H 1.09004 * 109.47091 * 56.49438 * 4 3 2 31 31 H 1.08999 * 109.47221 * 176.49203 * 4 3 2 32 32 H 1.08993 * 109.47490 * 64.66262 * 5 4 3 33 33 H 1.09001 * 109.47225 * 184.66543 * 5 4 3 34 34 H 1.09007 * 109.46937 * 304.66162 * 5 4 3 35 35 H 1.09002 * 109.47293 * 304.99799 * 6 3 2 36 36 H 1.09004 * 109.47219 * 184.99660 * 6 3 2 37 37 H 0.96997 * 120.00442 * 0.02562 * 7 6 3 38 38 H 1.08005 * 119.94510 * 0.02562 * 11 10 8 39 39 H 1.08002 * 120.05360 * 179.74394 * 12 11 10 40 40 H 0.97001 * 119.99940 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.05522 * 180.02562 * 22 13 12 42 42 H 1.08002 * 119.94367 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4687 2.1854 -1.2094 5 6 1.9863 1.5393 -2.4961 6 6 1.5934 2.1414 1.2856 7 7 2.2360 1.5032 2.4370 8 6 1.9896 1.9553 3.6826 9 8 1.2335 2.8926 3.8506 10 6 2.6368 1.3117 4.8430 11 6 3.5104 0.2353 4.6467 12 6 4.1062 -0.3654 5.7154 13 6 3.8506 0.1056 7.0184 14 6 4.4699 -0.5089 8.1274 15 1 4.7932 -1.5374 8.0640 16 6 4.6655 0.2159 9.3118 17 7 4.6262 1.5216 9.2927 18 14 4.9824 -0.6856 10.9169 19 1 6.4458 -0.7804 11.1509 20 1 4.3494 0.0580 12.0356 21 1 4.4039 -2.0512 10.8403 22 6 2.9749 1.1925 7.2105 23 6 2.3789 1.7829 6.1360 24 1 -0.3633 0.5227 0.8848 25 1 -0.3633 0.5051 -0.8951 26 1 -0.3634 -1.0275 0.0101 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1287 1.4430 -0.0544 30 1 0.3802 2.1313 -1.1881 31 1 1.7813 3.2290 -1.1757 32 1 1.6049 0.5209 -2.5702 33 1 1.6468 2.1178 -3.3552 34 1 3.0760 1.5189 -2.4795 35 1 0.5106 2.0633 1.3843 36 1 1.8797 3.1924 1.2461 37 1 2.8395 0.7557 2.3030 38 1 3.7096 -0.1220 3.6471 39 1 4.7767 -1.1983 5.5633 40 1 4.7618 2.0230 10.1120 41 1 2.7761 1.5573 8.2074 42 1 1.7072 2.6158 6.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270318763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -66.645511 kcal Electronic energy + Delta-G solvation = -20671.670117 eV Core-core repulsion = 17614.306382 eV Total energy + Delta-G solvation = -3057.363735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87934 -39.19055 -38.37310 -35.69550 -34.92660 -32.09120 -31.89838 -31.40562 -29.40207 -27.55093 -25.32385 -24.33833 -23.39149 -22.57059 -21.25958 -20.04673 -19.35633 -18.44438 -17.16539 -16.99046 -16.77855 -16.09487 -15.75140 -15.58843 -15.25540 -15.03442 -14.46487 -14.40825 -14.02195 -13.83073 -13.68199 -13.49729 -13.34119 -13.15319 -12.82284 -12.75006 -12.64822 -12.37889 -12.33998 -12.03329 -11.80036 -11.49173 -11.36493 -11.31537 -11.23236 -11.10813 -10.69672 -10.02040 -9.57194 -9.40741 -8.80219 -6.47946 0.44601 1.14881 1.37437 1.42266 1.54927 2.11391 2.18163 2.42963 2.79242 3.69011 3.77219 3.89893 3.96447 4.28141 4.32078 4.38134 4.40663 4.42740 4.58017 4.61381 4.71498 4.79583 4.88877 4.96894 5.00142 5.01888 5.08009 5.13249 5.20178 5.25760 5.30218 5.33705 5.37880 5.44075 5.58038 5.60439 5.64824 5.78609 5.95753 6.01660 6.19997 6.55530 6.74617 6.76398 6.89504 7.46511 8.15705 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003204 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.196975 B = 8738.097250 C = 9035.942210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.118 4.118 5 C -0.148 4.148 6 C 0.123 3.877 7 N -0.719 5.719 8 C 0.568 3.432 9 O -0.611 6.611 10 C -0.294 4.294 11 C -0.037 4.037 12 C -0.245 4.245 13 C 0.102 3.898 14 C -0.473 4.473 15 H 0.093 0.907 16 C 0.034 3.966 17 N -0.803 5.803 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.203 4.203 23 C -0.050 4.050 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.408 0.592 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.295 0.705 41 H 0.102 0.898 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 -4.213 -15.634 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.109 4.109 4 C -0.156 4.156 5 C -0.205 4.205 6 C 0.000 4.000 7 N -0.372 5.372 8 C 0.361 3.639 9 O -0.496 6.496 10 C -0.299 4.299 11 C -0.055 4.055 12 C -0.265 4.265 13 C 0.098 3.902 14 C -0.500 4.500 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.223 4.223 23 C -0.070 4.070 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.245 0.755 38 H 0.151 0.849 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.282 -3.340 -15.432 15.953 hybrid contribution 0.288 -0.074 1.055 1.096 sum -1.993 -3.414 -14.377 14.910 Atomic orbital electron populations 1.21882 0.96094 1.01744 1.01665 1.21576 0.96216 0.95357 1.02540 1.21407 1.01177 0.95717 0.92605 1.21540 1.01183 0.99203 0.93697 1.21765 1.01269 1.01144 0.96341 1.21478 0.97327 0.96346 0.84892 1.45736 1.49354 1.37043 1.05031 1.18455 0.79800 0.81779 0.83827 1.90614 1.40542 1.31713 1.86770 1.19193 1.12158 1.06176 0.92353 1.20685 0.93329 0.93060 0.98476 1.20942 1.07430 1.05908 0.92186 1.18139 0.88296 0.90357 0.93363 1.20146 1.33239 0.99878 0.96706 0.88897 1.27029 0.91675 0.95226 1.04569 1.69810 1.32131 1.08836 1.31901 0.85096 0.79602 0.79390 0.75161 1.18226 1.19200 1.17660 1.20898 1.01897 1.02127 0.97352 1.20541 0.96815 0.96962 0.92664 0.94377 0.91267 0.92438 0.89767 0.92567 0.89846 0.91229 0.92076 0.91924 0.92154 0.92523 0.92533 0.93297 0.75488 0.84874 0.86487 0.89360 0.88051 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.21 71.98 0.66 -2.13 16 2 C -0.12 -2.01 5.26 30.59 0.16 -1.85 16 3 C -0.09 -1.65 2.22 -10.80 -0.02 -1.67 16 4 C -0.12 -1.81 5.10 30.59 0.16 -1.66 16 5 C -0.15 -1.78 9.51 71.98 0.68 -1.10 16 6 C 0.12 3.30 4.90 86.38 0.42 3.73 16 7 N -0.72 -22.88 5.20 -466.16 -2.43 -25.31 16 8 C 0.57 24.54 7.76 86.73 0.67 25.21 16 9 O -0.61 -30.69 16.32 -4.01 -0.07 -30.75 16 10 C -0.29 -13.67 5.89 -19.93 -0.12 -13.79 16 11 C -0.04 -1.52 9.47 22.25 0.21 -1.31 16 12 C -0.25 -11.19 9.73 22.47 0.22 -10.98 16 13 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 14 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 15 H 0.09 4.36 7.92 -2.91 -0.02 4.34 16 16 C 0.03 1.61 5.11 85.35 0.44 2.04 16 17 N -0.80 -40.52 11.05 21.87 0.24 -40.28 16 18 Si 0.99 35.46 29.60 68.60 2.03 37.49 16 19 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 20 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 22 C -0.20 -10.95 8.63 22.47 0.19 -10.75 16 23 C -0.05 -2.61 9.52 22.25 0.21 -2.39 16 24 H 0.04 0.84 6.37 -2.39 -0.02 0.83 16 25 H 0.07 1.04 6.33 -2.38 -0.02 1.03 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.12 6.78 -2.39 -0.02 1.11 16 28 H 0.06 1.05 7.11 -2.39 -0.02 1.03 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.06 6.19 -2.38 -0.01 1.05 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.69 6.83 -2.39 -0.02 0.67 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 1.64 6.26 -2.39 -0.01 1.63 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.41 10.82 5.65 -92.71 -0.52 10.30 16 38 H 0.13 4.19 6.37 -2.91 -0.02 4.17 16 39 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.30 13.34 8.29 -92.71 -0.77 12.58 16 41 H 0.10 5.67 6.23 -2.91 -0.02 5.65 16 42 H 0.09 4.68 7.63 -2.91 -0.02 4.66 16 Total: -1.00 -63.24 335.30 4.26 -58.98 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.50 Total: 34.94 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.98 Total: -35.07 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -2.18 Total: -65.58 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.07 Total: -30.75 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -63.24 4.26 -58.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270318763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.666 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds