Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46931 * 2 1 4 4 C 1.53008 * 109.46827 * 60.00252 * 3 2 1 5 5 C 1.52997 * 109.47214 * 300.00462 * 3 2 1 6 6 N 1.46493 * 109.47105 * 180.02562 * 3 2 1 7 7 C 1.46495 * 120.00237 * 37.60356 * 6 3 2 8 8 C 1.34778 * 120.00070 * 217.60488 * 6 3 2 9 9 O 1.21590 * 119.99857 * 147.49109 * 8 6 3 10 10 C 1.47639 * 120.00073 * 327.49664 * 8 6 3 11 11 C 1.40017 * 119.89510 * 7.89725 * 10 8 6 12 12 C 1.36316 * 120.10593 * 180.26001 * 11 10 8 13 13 C 1.40887 * 119.89336 * 359.47957 * 12 11 10 14 14 C 1.41111 * 120.10518 * 180.30011 * 13 12 11 15 15 H 1.08005 * 119.99978 * 146.64783 * 14 13 12 16 16 C 1.40220 * 119.99801 * 326.64253 * 14 13 12 17 17 N 1.30650 * 120.00231 * 0.31948 * 16 14 13 18 18 Si 1.86801 * 119.99916 * 180.31505 * 16 14 13 19 19 H 1.48497 * 109.47196 * 90.00418 * 18 16 14 20 20 H 1.48501 * 109.47124 * 210.00478 * 18 16 14 21 21 H 1.48499 * 109.47169 * 330.00006 * 18 16 14 22 22 C 1.40888 * 119.79093 * 0.27405 * 13 12 11 23 23 C 1.36313 * 119.89447 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47051 * 299.99348 * 1 2 3 25 25 H 1.09001 * 109.47056 * 59.99860 * 1 2 3 26 26 H 1.09000 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47051 * 240.00652 * 2 1 3 28 28 H 1.08995 * 109.47428 * 120.00382 * 2 1 3 29 29 H 1.08994 * 109.46734 * 133.87713 * 4 3 2 30 30 H 1.08999 * 109.46947 * 253.87702 * 4 3 2 31 31 H 1.09001 * 109.46860 * 13.87725 * 4 3 2 32 32 H 1.08997 * 109.47137 * 317.83189 * 5 3 2 33 33 H 1.09001 * 109.47573 * 77.83522 * 5 3 2 34 34 H 1.08999 * 109.47205 * 197.83546 * 5 3 2 35 35 H 1.09004 * 109.47362 * 273.35482 * 7 6 3 36 36 H 1.09000 * 109.46914 * 33.35524 * 7 6 3 37 37 H 1.09005 * 109.47469 * 153.35378 * 7 6 3 38 38 H 1.08000 * 119.94771 * 0.03813 * 11 10 8 39 39 H 1.08001 * 120.05483 * 179.75186 * 12 11 10 40 40 H 0.96993 * 120.00222 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.05233 * 180.02562 * 22 13 12 42 42 H 1.08004 * 119.94772 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 6 1.5299 2.1638 -1.2492 6 7 3.5049 1.4426 -0.0006 7 6 4.2372 0.4376 -0.7752 8 6 4.1791 2.3672 0.7115 9 8 5.2523 2.0871 1.2096 10 6 3.6144 3.7200 0.8867 11 6 2.3100 3.9928 0.4572 12 6 1.7862 5.2417 0.6121 13 6 2.5557 6.2560 1.2154 14 6 2.0157 7.5488 1.3837 15 1 2.2935 8.1425 2.2421 16 6 1.1184 8.0625 0.4365 17 7 0.7776 7.3418 -0.5986 18 14 0.4103 9.7773 0.6547 19 1 1.2942 10.7664 -0.0127 20 1 -0.9437 9.8346 0.0476 21 1 0.3173 10.0939 2.1025 22 6 3.8659 5.9753 1.6507 23 6 4.3834 4.7250 1.4860 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3494 2.7147 1.7107 30 1 0.7373 2.8578 0.9700 31 1 1.1399 1.4323 1.9572 32 1 1.6130 1.5013 -2.1106 33 1 0.4865 2.4446 -1.1060 34 1 2.1269 3.0595 -1.4208 35 1 4.3671 -0.4616 -0.1730 36 1 3.6751 0.1932 -1.6765 37 1 5.2142 0.8335 -1.0525 38 1 1.7191 3.2133 -0.0007 39 1 0.7813 5.4522 0.2769 40 1 0.1566 7.6970 -1.2536 41 1 4.4594 6.7496 2.1141 42 1 5.3878 4.5090 1.8189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270351987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = 63.867692 kcal Electronic energy + Delta-G solvation = -22433.453686 eV Core-core repulsion = 19381.749428 eV Total energy + Delta-G solvation = -3051.704258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59387 -38.98536 -38.74351 -35.71568 -34.27509 -33.37327 -31.51191 -30.04027 -29.00220 -27.71382 -26.78886 -25.40227 -23.37731 -22.41134 -21.51443 -19.40413 -19.22510 -17.97473 -17.42611 -16.96593 -16.57917 -16.36569 -15.88303 -15.50513 -14.97753 -14.82804 -14.47950 -14.18315 -13.85586 -13.56482 -13.55092 -13.35283 -13.28704 -13.11824 -12.84940 -12.76563 -12.63800 -12.58822 -12.25055 -12.13875 -11.94700 -11.71147 -11.59513 -11.48326 -11.08663 -10.74135 -10.50159 -9.51916 -9.29295 -8.99157 -8.63109 -6.49687 0.38665 1.20976 1.40123 1.41686 1.53213 2.02190 2.17481 2.19761 2.79313 3.61212 3.66194 3.87212 3.94194 3.99378 4.33004 4.43406 4.45765 4.48982 4.57662 4.66454 4.69453 4.76405 4.79483 4.84192 4.88606 5.05656 5.07383 5.12216 5.14468 5.18268 5.21552 5.29105 5.39722 5.45650 5.54909 5.66862 5.79136 5.90110 6.01867 6.05233 6.28252 6.55808 6.61090 6.83396 6.93890 7.30765 8.27116 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.005630 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.927770 B = 4972.464321 C = 5799.887704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.169 3.831 4 C -0.199 4.199 5 C -0.182 4.182 6 N -0.633 5.633 7 C 0.094 3.906 8 C 0.581 3.419 9 O -0.595 6.595 10 C -0.305 4.305 11 C -0.090 4.090 12 C -0.206 4.206 13 C 0.105 3.895 14 C -0.481 4.481 15 H 0.078 0.922 16 C 0.034 3.966 17 N -0.812 5.812 18 Si 0.990 3.010 19 H -0.265 1.265 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.260 4.260 23 C -0.040 4.040 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.206 0.794 39 H 0.121 0.879 40 H 0.293 0.707 41 H 0.099 0.901 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -10.316 -4.074 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.085 3.915 4 C -0.254 4.254 5 C -0.240 4.240 6 N -0.367 5.367 7 C -0.048 4.048 8 C 0.377 3.623 9 O -0.479 6.479 10 C -0.310 4.310 11 C -0.106 4.106 12 C -0.225 4.225 13 C 0.102 3.898 14 C -0.510 4.510 15 H 0.096 0.904 16 C -0.182 4.182 17 N -0.437 5.437 18 Si 0.811 3.189 19 H -0.190 1.190 20 H -0.185 1.185 21 H -0.183 1.183 22 C -0.280 4.280 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.221 0.779 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.513 -10.490 -4.047 12.522 hybrid contribution 0.313 1.156 0.303 1.236 sum -5.199 -9.333 -3.743 11.321 Atomic orbital electron populations 1.21842 0.93446 1.02866 1.02774 1.21853 0.97560 0.92702 1.03114 1.20676 0.78160 0.97525 0.95120 1.23640 1.03435 1.00591 0.97782 1.22673 1.02309 1.01061 0.97942 1.47665 1.06539 1.31891 1.50653 1.21623 0.96373 0.91038 0.95721 1.18395 0.82963 0.84873 0.76064 1.90590 1.26630 1.81906 1.48747 1.19432 0.98761 0.93802 1.18964 1.23682 0.94361 0.98593 0.94008 1.21180 1.01212 0.91969 1.08161 1.18243 0.90240 0.93585 0.87688 1.20029 1.22620 1.00163 1.08189 0.90358 1.26849 0.93950 1.04013 0.93415 1.69722 1.26103 1.38921 1.08990 0.85072 0.78128 0.75931 0.79818 1.19036 1.18541 1.18297 1.20864 0.96772 0.96749 1.13584 1.20542 0.97676 0.92875 0.94812 0.92690 0.91388 0.90920 0.89607 0.92090 0.90268 0.90072 0.92011 0.89604 0.89580 0.92543 0.92601 0.88380 0.93137 0.77859 0.86125 0.89634 0.88311 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.35 71.98 0.67 -1.82 16 2 C -0.11 -2.28 4.26 30.60 0.13 -2.15 16 3 C 0.17 4.67 0.56 3.61 0.00 4.67 16 4 C -0.20 -6.39 6.47 71.98 0.47 -5.92 16 5 C -0.18 -4.72 6.71 71.98 0.48 -4.24 16 6 N -0.63 -21.24 2.75 -803.93 -2.21 -23.45 16 7 C 0.09 2.48 9.17 127.77 1.17 3.65 16 8 C 0.58 25.48 6.31 86.73 0.55 26.03 16 9 O -0.60 -29.54 16.57 -4.00 -0.07 -29.61 16 10 C -0.31 -14.36 4.58 -19.93 -0.09 -14.45 16 11 C -0.09 -3.95 4.19 22.25 0.09 -3.86 16 12 C -0.21 -10.23 8.56 22.47 0.19 -10.04 16 13 C 0.11 5.62 5.55 -21.28 -0.12 5.50 16 14 C -0.48 -25.04 9.04 23.46 0.21 -24.83 16 15 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 16 C 0.03 1.62 5.39 85.35 0.46 2.08 16 17 N -0.81 -39.27 10.63 21.87 0.23 -39.04 16 18 Si 0.99 35.98 29.56 68.60 2.03 38.01 16 19 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 C -0.26 -13.45 9.73 22.47 0.22 -13.23 16 23 C -0.04 -2.00 9.52 22.25 0.21 -1.78 16 24 H 0.05 0.98 6.76 -2.39 -0.02 0.97 16 25 H 0.07 1.03 6.86 -2.39 -0.02 1.01 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.39 6.86 -2.39 -0.02 1.37 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 3.23 3.38 -3.40 -0.01 3.22 16 30 H 0.08 2.59 5.83 -2.39 -0.01 2.58 16 31 H 0.06 1.74 6.90 -2.39 -0.02 1.72 16 32 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.09 2.01 6.94 -2.39 -0.02 1.99 16 34 H 0.06 1.88 5.92 -2.39 -0.01 1.86 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.85 7.33 -2.39 -0.02 1.84 16 37 H 0.05 1.47 7.90 -2.38 -0.02 1.45 16 38 H 0.21 7.37 0.52 -74.49 -0.04 7.33 16 39 H 0.12 6.08 6.16 -2.91 -0.02 6.06 16 40 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 41 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.10 4.74 7.65 -2.91 -0.02 4.72 16 Total: -1.00 -63.63 315.88 5.63 -58.01 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 0.99 Total: 36.45 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 4.65 Total: -40.37 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -1.98 Total: -62.49 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.07 Total: -29.61 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -63.63 5.63 -58.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270351987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.877 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds