Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46965 * 2 1 4 4 C 1.52997 * 109.46715 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47550 * 59.99943 * 4 3 2 6 6 C 1.52996 * 109.47161 * 299.99892 * 4 3 2 7 7 N 1.46499 * 109.47047 * 179.97438 * 4 3 2 8 8 C 1.34778 * 120.00128 * 179.97438 * 7 4 3 9 9 O 1.21588 * 119.99834 * 0.02562 * 8 7 4 10 10 C 1.47640 * 120.00034 * 180.02562 * 8 7 4 11 11 C 1.40011 * 119.89766 * 180.02562 * 10 8 7 12 12 C 1.36318 * 120.11332 * 180.25731 * 11 10 8 13 13 C 1.40888 * 119.88287 * 359.52115 * 12 11 10 14 14 C 1.41111 * 120.10193 * 180.23331 * 13 12 11 15 15 H 1.08006 * 120.00143 * 205.23811 * 14 13 12 16 16 C 1.40223 * 120.00060 * 25.23253 * 14 13 12 17 17 N 1.30648 * 119.99932 * 17.90847 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 197.91112 * 16 14 13 19 19 H 1.48504 * 109.47210 * 94.52286 * 18 16 14 20 20 H 1.48498 * 109.47308 * 214.52473 * 18 16 14 21 21 H 1.48498 * 109.47073 * 334.52576 * 18 16 14 22 22 C 1.40892 * 119.79886 * 0.49910 * 13 12 11 23 23 C 1.36312 * 119.88562 * 359.73200 * 22 13 12 24 24 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46942 * 300.00435 * 1 2 3 26 26 H 1.09006 * 109.46727 * 60.00184 * 1 2 3 27 27 H 1.08997 * 109.46942 * 239.99565 * 2 1 3 28 28 H 1.08998 * 109.46651 * 120.00124 * 2 1 3 29 29 H 1.08999 * 109.47138 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.46661 * 299.99320 * 3 2 1 31 31 H 1.08992 * 109.47332 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46920 * 300.00273 * 5 4 3 33 33 H 1.09002 * 109.47046 * 59.99434 * 5 4 3 34 34 H 1.08997 * 109.47047 * 299.99761 * 6 4 3 35 35 H 1.09000 * 109.47577 * 60.00336 * 6 4 3 36 36 H 1.09005 * 109.46820 * 180.02562 * 6 4 3 37 37 H 0.97005 * 120.00088 * 0.02562 * 7 4 3 38 38 H 1.08002 * 119.94370 * 359.97438 * 11 10 8 39 39 H 1.07992 * 120.05843 * 179.72000 * 12 11 10 40 40 H 0.97006 * 120.00000 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.05487 * 179.71249 * 22 13 12 42 42 H 1.08006 * 119.94498 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0806 0.7210 -1.2483 6 6 4.0794 0.7214 1.2502 7 7 4.0583 2.8237 0.0000 8 6 5.3834 3.0699 0.0010 9 8 6.1735 2.1457 0.0018 10 6 5.8756 4.4619 0.0009 11 6 7.2526 4.7152 0.0013 12 6 7.7118 5.9987 0.0066 13 6 6.7982 7.0712 0.0014 14 6 7.2685 8.4016 0.0018 15 1 6.6491 9.1932 0.3970 16 6 8.5401 8.6959 -0.5108 17 7 9.1433 7.8404 -1.2925 18 14 9.3717 10.3110 -0.0758 19 1 10.2675 10.1081 1.0911 20 1 10.1691 10.7852 -1.2354 21 1 8.3397 11.3237 0.2626 22 6 5.4134 6.8113 0.0014 23 6 4.9639 5.5245 0.0010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 5.1705 0.7213 -1.2480 32 1 3.7172 -0.3066 -1.2483 33 1 3.7176 1.2346 -2.1385 34 1 3.7158 1.2354 2.1399 35 1 3.7161 -0.3063 1.2503 36 1 5.1694 0.7218 1.2508 37 1 3.4280 3.5610 -0.0003 38 1 7.9521 3.8924 0.0021 39 1 8.7741 6.1931 0.0115 40 1 10.0228 8.0441 -1.6474 41 1 4.7094 7.6303 0.0021 42 1 3.9026 5.3242 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270355443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -45.599453 kcal Electronic energy + Delta-G solvation = -20956.449641 eV Core-core repulsion = 17899.998532 eV Total energy + Delta-G solvation = -3056.451109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66726 -37.63166 -36.46099 -33.87288 -33.44631 -31.19071 -29.87598 -29.22163 -27.07132 -26.68008 -25.85139 -22.90999 -21.68286 -20.88623 -19.57293 -18.95107 -17.48842 -17.00840 -15.54996 -15.31824 -15.21443 -14.41238 -14.25138 -13.95118 -13.81191 -13.28941 -13.19743 -13.11588 -12.76288 -12.20703 -12.17796 -12.10763 -11.80088 -11.79702 -11.47965 -11.33272 -11.24763 -11.11230 -11.01111 -10.90581 -10.63958 -10.56296 -10.50144 -10.00451 -9.51441 -9.32665 -8.72285 -8.52163 -7.68029 -7.54214 -7.00345 -4.58367 2.26680 2.92754 2.97070 2.99942 3.04898 3.75828 3.77550 3.91493 4.59439 4.72461 4.83137 4.97123 5.20290 5.27830 5.37644 5.58492 5.62292 5.63230 5.73565 5.83257 5.88779 5.89800 5.99890 6.07235 6.07391 6.14714 6.19120 6.24965 6.31692 6.59430 6.63833 6.82433 6.86173 7.08113 7.10160 7.16719 7.45878 7.63892 7.81950 7.90312 8.07604 8.33238 8.45210 8.64967 8.77532 9.16109 9.92018 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.003356 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.599262 B = 8342.459754 C = 8711.994545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C 0.176 3.824 5 C -0.164 4.164 6 C -0.163 4.163 7 N -0.737 5.737 8 C 0.575 3.425 9 O -0.569 6.569 10 C -0.283 4.283 11 C -0.036 4.036 12 C -0.183 4.183 13 C 0.129 3.871 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.235 4.235 23 C -0.050 4.050 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.394 0.606 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.287 0.713 41 H 0.096 0.904 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 -8.109 1.592 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C 0.090 3.910 5 C -0.222 4.222 6 C -0.221 4.221 7 N -0.389 5.389 8 C 0.369 3.631 9 O -0.451 6.451 10 C -0.287 4.287 11 C -0.055 4.055 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.393 5.393 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.255 4.255 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.229 0.771 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.896 -8.801 1.433 13.321 hybrid contribution 0.019 1.153 0.029 1.154 sum -9.878 -7.648 1.461 12.577 Atomic orbital electron populations 1.21779 0.95961 1.01431 1.01764 1.21613 0.95544 0.96408 1.02614 1.21853 0.94041 0.97654 1.02373 1.20149 0.92464 0.82679 0.95711 1.22270 1.04039 0.99281 0.96561 1.22267 1.04030 0.99291 0.96534 1.46070 1.07668 1.07035 1.78145 1.18513 0.80958 0.89599 0.74001 1.90566 1.55633 1.46360 1.52515 1.18969 0.94360 0.90263 1.25137 1.20476 0.93333 0.96430 0.95294 1.20998 0.99925 0.91128 1.08138 1.17779 0.90910 0.93450 0.85328 1.19837 0.99600 0.94223 1.33639 0.89773 1.26098 0.96952 0.99192 0.92504 1.69756 1.13936 1.35626 1.20001 0.86206 0.79716 0.81166 0.79220 1.18995 1.19997 1.18289 1.20668 0.95468 0.94903 1.14443 1.20366 0.96122 0.93153 0.97276 0.92867 0.92814 0.92812 0.91471 0.91481 0.91551 0.91532 0.90161 0.92381 0.93099 0.93124 0.92374 0.90166 0.77133 0.88208 0.86299 0.90207 0.88560 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.13 5.23 -26.73 -0.14 -1.27 16 3 C -0.12 -1.30 4.38 -26.73 -0.12 -1.42 16 4 C 0.18 2.46 0.83 -131.82 -0.11 2.35 16 5 C -0.16 -2.35 8.05 37.16 0.30 -2.05 16 6 C -0.16 -2.32 8.05 37.16 0.30 -2.02 16 7 N -0.74 -12.16 5.05 -48.60 -0.25 -12.41 16 8 C 0.57 12.04 7.18 -12.42 -0.09 11.95 16 9 O -0.57 -13.12 12.53 5.29 0.07 -13.05 16 10 C -0.28 -6.47 5.89 -104.73 -0.62 -7.08 16 11 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 12 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 13 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 14 C -0.45 -11.14 9.04 -37.75 -0.34 -11.48 16 15 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 16 C 0.07 1.75 5.13 -17.31 -0.09 1.67 16 17 N -0.77 -18.99 11.00 55.56 0.61 -18.38 16 18 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 22 C -0.24 -5.47 9.73 -39.27 -0.38 -5.85 16 23 C -0.05 -1.07 9.47 -39.61 -0.38 -1.45 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 28 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.41 6.16 -51.93 -0.32 1.09 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 36 H 0.08 1.39 6.16 -51.93 -0.32 1.07 16 37 H 0.39 5.79 6.47 -40.82 -0.26 5.53 16 38 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 39 H 0.12 3.13 6.20 -52.49 -0.33 2.80 16 40 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.09 1.55 6.37 -52.48 -0.33 1.22 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -27.65 332.09 -8.43 -36.08 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.23 Total: 11.35 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.60 Total: -21.09 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.37 Total: -30.78 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.65 -8.43 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270355443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.521 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds