Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46965 * 2 1 4 4 C 1.52997 * 109.46715 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47550 * 59.99943 * 4 3 2 6 6 C 1.52996 * 109.47161 * 299.99892 * 4 3 2 7 7 N 1.46499 * 109.47047 * 179.97438 * 4 3 2 8 8 C 1.34778 * 120.00128 * 179.97438 * 7 4 3 9 9 O 1.21588 * 119.99834 * 0.02562 * 8 7 4 10 10 C 1.47640 * 120.00034 * 180.02562 * 8 7 4 11 11 C 1.40011 * 119.89766 * 180.02562 * 10 8 7 12 12 C 1.36318 * 120.11332 * 180.25731 * 11 10 8 13 13 C 1.40888 * 119.88287 * 359.52115 * 12 11 10 14 14 C 1.41111 * 120.10193 * 180.23331 * 13 12 11 15 15 H 1.08006 * 120.00143 * 205.23811 * 14 13 12 16 16 C 1.40223 * 120.00060 * 25.23253 * 14 13 12 17 17 N 1.30648 * 119.99932 * 17.90847 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 197.91112 * 16 14 13 19 19 H 1.48504 * 109.47210 * 94.52286 * 18 16 14 20 20 H 1.48498 * 109.47308 * 214.52473 * 18 16 14 21 21 H 1.48498 * 109.47073 * 334.52576 * 18 16 14 22 22 C 1.40892 * 119.79886 * 0.49910 * 13 12 11 23 23 C 1.36312 * 119.88562 * 359.73200 * 22 13 12 24 24 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46942 * 300.00435 * 1 2 3 26 26 H 1.09006 * 109.46727 * 60.00184 * 1 2 3 27 27 H 1.08997 * 109.46942 * 239.99565 * 2 1 3 28 28 H 1.08998 * 109.46651 * 120.00124 * 2 1 3 29 29 H 1.08999 * 109.47138 * 59.99915 * 3 2 1 30 30 H 1.08998 * 109.46661 * 299.99320 * 3 2 1 31 31 H 1.08992 * 109.47332 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46920 * 300.00273 * 5 4 3 33 33 H 1.09002 * 109.47046 * 59.99434 * 5 4 3 34 34 H 1.08997 * 109.47047 * 299.99761 * 6 4 3 35 35 H 1.09000 * 109.47577 * 60.00336 * 6 4 3 36 36 H 1.09005 * 109.46820 * 180.02562 * 6 4 3 37 37 H 0.97005 * 120.00088 * 0.02562 * 7 4 3 38 38 H 1.08002 * 119.94370 * 359.97438 * 11 10 8 39 39 H 1.07992 * 120.05843 * 179.72000 * 12 11 10 40 40 H 0.97006 * 120.00000 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.05487 * 179.71249 * 22 13 12 42 42 H 1.08006 * 119.94498 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0806 0.7210 -1.2483 6 6 4.0794 0.7214 1.2502 7 7 4.0583 2.8237 0.0000 8 6 5.3834 3.0699 0.0010 9 8 6.1735 2.1457 0.0018 10 6 5.8756 4.4619 0.0009 11 6 7.2526 4.7152 0.0013 12 6 7.7118 5.9987 0.0066 13 6 6.7982 7.0712 0.0014 14 6 7.2685 8.4016 0.0018 15 1 6.6491 9.1932 0.3970 16 6 8.5401 8.6959 -0.5108 17 7 9.1433 7.8404 -1.2925 18 14 9.3717 10.3110 -0.0758 19 1 10.2675 10.1081 1.0911 20 1 10.1691 10.7852 -1.2354 21 1 8.3397 11.3237 0.2626 22 6 5.4134 6.8113 0.0014 23 6 4.9639 5.5245 0.0010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9562 -0.8900 31 1 5.1705 0.7213 -1.2480 32 1 3.7172 -0.3066 -1.2483 33 1 3.7176 1.2346 -2.1385 34 1 3.7158 1.2354 2.1399 35 1 3.7161 -0.3063 1.2503 36 1 5.1694 0.7218 1.2508 37 1 3.4280 3.5610 -0.0003 38 1 7.9521 3.8924 0.0021 39 1 8.7741 6.1931 0.0115 40 1 10.0228 8.0441 -1.6474 41 1 4.7094 7.6303 0.0021 42 1 3.9026 5.3242 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270355443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -59.971748 kcal Electronic energy + Delta-G solvation = -20957.072870 eV Core-core repulsion = 17899.998532 eV Total energy + Delta-G solvation = -3057.074339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15203 -39.27116 -37.88852 -35.68171 -34.57204 -32.57533 -31.67553 -30.91672 -28.22268 -27.67418 -27.51836 -24.26223 -23.15302 -22.52660 -21.03863 -20.26341 -19.30941 -18.56321 -17.16513 -16.71268 -16.09910 -15.90420 -15.70402 -15.70187 -15.11772 -14.77394 -14.45593 -14.44195 -14.05001 -13.93807 -13.69385 -13.26731 -13.10926 -12.99376 -12.83716 -12.72870 -12.62521 -12.46356 -12.32968 -12.08611 -11.94473 -11.72811 -11.58842 -11.33967 -11.31701 -11.12853 -10.35175 -9.96752 -9.56187 -9.39757 -8.78768 -6.47807 0.47155 1.15335 1.37557 1.43055 1.53215 2.13912 2.19949 2.42331 2.81583 3.70212 3.75420 3.98370 4.12153 4.22605 4.32234 4.34072 4.39429 4.41650 4.62786 4.77051 4.77578 4.86402 4.90014 4.97316 5.01667 5.02255 5.04354 5.08952 5.20563 5.24012 5.27221 5.29050 5.42734 5.53401 5.53745 5.59967 5.79410 5.80319 5.98470 6.02937 6.21151 6.56629 6.77365 6.83226 6.91324 7.56238 8.16834 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.003356 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.599262 B = 8342.459754 C = 8711.994545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.113 4.113 4 C 0.170 3.830 5 C -0.161 4.161 6 C -0.160 4.160 7 N -0.720 5.720 8 C 0.573 3.427 9 O -0.595 6.595 10 C -0.293 4.293 11 C -0.050 4.050 12 C -0.203 4.203 13 C 0.101 3.899 14 C -0.475 4.475 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.805 5.805 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.246 4.246 23 C -0.039 4.039 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.405 0.595 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.295 0.705 41 H 0.115 0.885 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.188 -7.977 1.843 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.150 4.150 4 C 0.085 3.915 5 C -0.218 4.218 6 C -0.218 4.218 7 N -0.372 5.372 8 C 0.366 3.634 9 O -0.479 6.479 10 C -0.297 4.297 11 C -0.070 4.070 12 C -0.223 4.223 13 C 0.098 3.902 14 C -0.502 4.502 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.429 5.429 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.174 1.174 22 C -0.266 4.266 23 C -0.058 4.058 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.242 0.758 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.471 -8.684 1.681 15.290 hybrid contribution 0.746 0.975 -0.065 1.229 sum -11.725 -7.709 1.616 14.125 Atomic orbital electron populations 1.21756 0.94786 1.02148 1.02036 1.21612 0.96526 0.95095 1.02801 1.21812 0.90844 0.99167 1.03216 1.20437 0.94842 0.80871 0.95396 1.22228 1.01572 1.01157 0.96889 1.22221 1.01594 1.01136 0.96828 1.45966 1.06105 1.08912 1.76229 1.18306 0.82414 0.88411 0.74227 1.90569 1.56850 1.46791 1.53683 1.19292 0.93903 0.92159 1.24341 1.20543 0.94615 0.95801 0.96019 1.20920 0.99368 0.91925 1.10076 1.18140 0.92189 0.93805 0.86105 1.20143 1.01019 0.94292 1.34733 0.89058 1.27019 0.97013 1.02839 0.91654 1.69810 1.14613 1.37709 1.20780 0.85079 0.78562 0.76513 0.78971 1.18747 1.19126 1.17401 1.20945 0.94843 0.96383 1.14383 1.20705 0.98104 0.91866 0.95119 0.92004 0.92518 0.92594 0.91352 0.91261 0.90649 0.90774 0.93883 0.89726 0.92853 0.92690 0.89749 0.93844 0.75824 0.89163 0.88047 0.89434 0.86673 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.80 5.23 30.60 0.16 -1.64 16 3 C -0.11 -2.02 4.38 30.59 0.13 -1.89 16 4 C 0.17 4.38 0.83 3.60 0.00 4.39 16 5 C -0.16 -4.39 8.05 71.98 0.58 -3.81 16 6 C -0.16 -4.30 8.05 71.98 0.58 -3.72 16 7 N -0.72 -22.50 5.05 -425.94 -2.15 -24.66 16 8 C 0.57 23.97 7.18 86.73 0.62 24.60 16 9 O -0.59 -28.17 12.53 -3.99 -0.05 -28.22 16 10 C -0.29 -13.45 5.89 -19.94 -0.12 -13.57 16 11 C -0.05 -2.59 9.52 22.25 0.21 -2.38 16 12 C -0.20 -10.97 8.63 22.47 0.19 -10.78 16 13 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 14 C -0.47 -24.12 9.04 23.46 0.21 -23.91 16 15 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 16 C 0.03 1.59 5.13 85.35 0.44 2.03 16 17 N -0.81 -40.89 11.00 21.87 0.24 -40.65 16 18 Si 0.99 35.83 29.60 68.60 2.03 37.86 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 21 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 22 C -0.25 -11.31 9.73 22.47 0.22 -11.10 16 23 C -0.04 -1.62 9.47 22.25 0.21 -1.41 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 28 H 0.07 1.00 6.43 -2.39 -0.02 0.99 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.51 6.16 -2.39 -0.01 1.50 16 32 H 0.08 1.82 6.43 -2.39 -0.02 1.81 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.79 6.43 -2.39 -0.02 1.77 16 36 H 0.04 1.51 6.16 -2.38 -0.01 1.49 16 37 H 0.40 10.68 6.47 -92.70 -0.60 10.08 16 38 H 0.09 4.67 7.63 -2.91 -0.02 4.65 16 39 H 0.10 5.69 6.20 -2.91 -0.02 5.67 16 40 H 0.29 13.42 8.29 -92.70 -0.77 12.65 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.13 4.21 6.37 -2.91 -0.02 4.19 16 Total: -1.00 -62.45 332.09 4.53 -57.92 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.42 Total: 36.89 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.04 Total: -39.15 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -1.91 Total: -65.31 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -62.45 4.53 -57.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270355443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.056 kcal (2) G-P(sol) polarization free energy of solvation -62.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds