Wall clock time and date at job start Mon Mar 30 2020 01:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 112.85492 * 2 1 4 4 C 1.53781 * 113.61642 * 131.20391 * 2 1 3 5 5 H 1.09002 * 113.61228 * 254.52565 * 4 2 1 6 6 N 1.46500 * 113.61339 * 25.34511 * 4 2 1 7 7 C 1.36936 * 119.99618 * 203.47656 * 6 4 2 8 8 H 1.07990 * 120.00427 * 359.97438 * 7 6 4 9 9 C 1.38824 * 119.99622 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00063 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99662 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47100 * 90.00073 * 11 9 7 13 13 H 1.48504 * 109.47148 * 209.99685 * 11 9 7 14 14 H 1.48493 * 109.47533 * 329.99863 * 11 9 7 15 15 C 1.53785 * 87.08241 * 139.97533 * 4 2 1 16 16 C 1.53777 * 87.08241 * 334.56547 * 15 4 2 17 17 H 1.08994 * 113.61814 * 270.88533 * 16 15 4 18 18 O 1.42905 * 113.68830 * 139.98830 * 16 15 4 19 19 C 1.42901 * 113.99576 * 112.46821 * 18 16 15 20 20 C 1.50700 * 109.46930 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99718 * 269.72444 * 20 19 18 22 22 C 1.38232 * 119.99538 * 179.81103 * 21 20 19 23 23 C 1.38235 * 120.00185 * 0.41961 * 22 21 20 24 24 C 1.38237 * 119.99875 * 359.81136 * 23 22 21 25 25 C 1.38223 * 119.99993 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46891 * 288.80171 * 1 2 3 27 27 H 1.08995 * 109.47133 * 48.79452 * 1 2 3 28 28 H 1.08991 * 109.47721 * 168.80184 * 1 2 3 29 29 H 1.09000 * 109.47442 * 191.19778 * 3 2 1 30 30 H 1.08998 * 109.47308 * 311.20233 * 3 2 1 31 31 H 1.09001 * 109.46385 * 71.20000 * 3 2 1 32 32 H 0.96998 * 120.00149 * 23.46564 * 6 4 2 33 33 H 0.96996 * 120.00147 * 180.02562 * 10 9 7 34 34 H 1.08999 * 113.61060 * 89.11970 * 15 4 2 35 35 H 1.08997 * 113.61198 * 220.01763 * 15 4 2 36 36 H 1.09001 * 109.47199 * 300.00206 * 19 18 16 37 37 H 1.09000 * 109.47104 * 59.99689 * 19 18 16 38 38 H 1.07994 * 119.99992 * 0.02562 * 21 20 19 39 39 H 1.08003 * 120.00136 * 180.21212 * 22 21 20 40 40 H 1.08004 * 120.00088 * 179.78988 * 23 22 21 41 41 H 1.08003 * 119.99389 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99996 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9282 1.0601 5 1 2.5651 -0.3972 1.9148 6 7 1.2696 -2.0348 1.4518 7 6 1.4348 -2.6414 2.6683 8 1 2.2114 -2.3044 3.3387 9 6 0.6040 -3.6897 3.0396 10 7 -0.3428 -4.1002 2.2227 11 14 0.8298 -4.5177 4.6988 12 1 -0.0030 -3.8254 5.7149 13 1 0.4134 -5.9399 4.6031 14 1 2.2584 -4.4460 5.0975 15 6 3.1923 -1.3137 0.0010 16 6 2.1460 -0.9301 -1.0586 17 1 1.4944 -1.7547 -1.3475 18 8 2.6936 -0.2360 -2.1814 19 6 2.6444 -0.9763 -3.4027 20 6 3.2454 -0.1537 -4.5132 21 6 2.4430 0.6843 -5.2647 22 6 2.9950 1.4417 -6.2807 23 6 4.3479 1.3547 -6.5510 24 6 5.1494 0.5131 -5.8025 25 6 4.5981 -0.2418 -4.7843 26 1 -0.3633 0.3312 0.9729 27 1 -0.3633 0.6770 -0.7731 28 1 -0.3634 -1.0080 -0.1996 29 1 3.1943 1.3532 -0.1996 30 1 1.6416 2.0076 -0.7732 31 1 1.9601 1.8732 0.9729 32 1 0.5722 -2.3377 0.8495 33 1 -0.9236 -4.8324 2.4823 34 1 4.0711 -0.6688 0.0005 35 1 3.4442 -2.3742 0.0020 36 1 3.2093 -1.9016 -3.2897 37 1 1.6076 -1.2108 -3.6439 38 1 1.3855 0.7497 -5.0557 39 1 2.3687 2.0990 -6.8657 40 1 4.7786 1.9440 -7.3470 41 1 6.2064 0.4448 -6.0140 42 1 5.2242 -0.8996 -4.1999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272436131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:56 Heat of formation + Delta-G solvation = -8.632471 kcal Electronic energy + Delta-G solvation = -21084.634206 eV Core-core repulsion = 18029.786106 eV Total energy + Delta-G solvation = -3054.848101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15848 -40.08153 -37.57521 -35.34959 -32.76518 -32.28001 -31.78043 -30.91385 -28.24591 -27.16755 -26.05341 -24.16553 -23.46219 -23.08913 -22.22089 -19.58193 -18.98726 -17.89116 -17.48779 -16.62933 -16.57584 -16.36600 -15.87469 -15.54388 -15.32112 -15.10743 -14.33072 -14.23893 -14.05693 -13.92487 -13.91474 -13.43458 -13.09059 -12.99707 -12.89370 -12.84491 -12.61507 -12.42311 -12.18854 -12.11460 -11.93711 -11.85490 -11.61505 -11.42030 -10.93442 -10.82508 -10.19741 -9.81191 -9.73627 -9.00311 -7.95456 -5.23709 0.35989 0.51104 1.47734 1.48879 1.57347 2.55140 2.62828 3.14703 3.36514 3.57146 3.70916 3.82420 3.92758 3.98771 4.16336 4.18255 4.19659 4.31400 4.35835 4.40078 4.48220 4.56206 4.67605 4.77445 4.79958 4.89000 4.90630 5.01899 5.08302 5.10764 5.13937 5.17009 5.24756 5.32046 5.49766 5.55927 5.58332 5.61587 5.63333 5.70145 6.11052 6.26248 6.35406 7.33297 8.08334 8.32555 9.27876 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.003471 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.983965 B = 8064.372978 C = 8249.698175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 C -0.104 4.104 4 C 0.159 3.841 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.242 4.242 8 H 0.076 0.924 9 C -0.073 4.073 10 N -0.969 5.969 11 Si 0.973 3.027 12 H -0.287 1.287 13 H -0.297 1.297 14 H -0.270 1.270 15 C -0.176 4.176 16 C 0.085 3.915 17 H 0.069 0.931 18 O -0.370 6.370 19 C 0.096 3.904 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.116 4.116 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 12.072 -16.777 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 C -0.161 4.161 4 C 0.049 3.951 5 H 0.084 0.916 6 N -0.354 5.354 7 C -0.374 4.374 8 H 0.094 0.906 9 C -0.265 4.265 10 N -0.619 5.619 11 Si 0.802 3.198 12 H -0.214 1.214 13 H -0.223 1.223 14 H -0.195 1.195 15 C -0.217 4.217 16 C 0.028 3.972 17 H 0.087 0.913 18 O -0.289 6.289 19 C 0.020 3.980 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.134 4.134 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.536 12.194 -16.571 22.274 hybrid contribution -0.547 -1.398 0.787 1.695 sum 7.988 10.796 -15.784 20.724 Atomic orbital electron populations 1.21493 0.94293 1.00688 1.01283 1.22620 0.95451 0.96409 0.94547 1.21282 1.00651 0.92642 1.01529 1.21260 0.91167 0.88817 0.93864 0.91647 1.42315 1.37749 1.37181 1.18189 1.19660 1.12450 1.10896 0.94366 0.90582 1.25530 0.98552 1.00478 1.01973 1.69806 1.22889 1.31151 1.38052 0.85152 0.77869 0.77110 0.79699 1.21411 1.22320 1.19507 1.24146 0.98834 1.00526 0.98206 1.23615 0.95055 0.94244 0.84314 0.91296 1.87958 1.82122 1.42693 1.16144 1.21417 0.99667 0.93538 0.83362 1.19734 0.94701 0.99281 0.96566 1.21275 1.00314 0.95772 0.95856 1.21461 0.96061 0.99419 0.97683 1.21556 0.93856 0.98446 0.99907 1.21452 1.01119 0.96545 0.95564 1.21269 0.94202 0.99836 0.98055 0.93299 0.91558 0.94430 0.92216 0.91835 0.92215 0.79026 0.94003 0.88890 0.93343 0.92785 0.92413 0.85564 0.83764 0.83430 0.83856 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.58 71.98 0.62 -3.57 16 2 C -0.09 -3.02 1.34 -51.65 -0.07 -3.09 16 3 C -0.10 -2.96 8.46 71.98 0.61 -2.35 16 4 C 0.16 6.47 4.01 45.52 0.18 6.66 16 5 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 6 N -0.72 -36.11 4.85 -320.44 -1.55 -37.66 16 7 C -0.24 -13.44 9.97 84.04 0.84 -12.60 16 8 H 0.08 4.07 7.83 -2.92 -0.02 4.04 16 9 C -0.07 -4.18 5.50 84.87 0.47 -3.72 16 10 N -0.97 -58.99 13.06 21.66 0.28 -58.70 16 11 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C -0.18 -6.43 7.37 31.12 0.23 -6.20 16 16 C 0.09 2.92 3.61 31.12 0.11 3.03 16 17 H 0.07 2.55 7.69 -2.39 -0.02 2.53 16 18 O -0.37 -11.50 9.44 -148.98 -1.41 -12.90 16 19 C 0.10 2.59 5.90 71.24 0.42 3.01 16 20 C -0.10 -2.49 5.51 -19.87 -0.11 -2.60 16 21 C -0.11 -2.45 9.70 22.27 0.22 -2.24 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.46 6.60 -2.39 -0.02 1.44 16 29 H 0.06 1.68 7.20 -2.39 -0.02 1.66 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.38 20.20 6.32 -92.71 -0.59 19.62 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.09 3.05 7.66 -2.39 -0.02 3.03 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -63.83 344.83 4.15 -59.68 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.40 Total: 33.11 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.40 Total: -31.72 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -1.27 Total: -96.37 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.41 Total: -12.90 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -63.83 4.15 -59.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.051 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds