Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 112.90595 * 2 1 4 4 C 1.53782 * 113.61127 * 131.24291 * 2 1 3 5 5 H 1.08992 * 113.61781 * 334.49100 * 4 2 1 6 6 N 1.46500 * 113.61350 * 203.66622 * 4 2 1 7 7 C 1.36943 * 119.99878 * 156.53106 * 6 4 2 8 8 H 1.07996 * 119.99698 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99902 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00319 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 59.99967 * 11 9 7 13 13 H 1.48503 * 109.47261 * 300.00148 * 11 9 7 14 14 H 1.48500 * 109.47454 * 180.02562 * 11 9 7 15 15 C 1.53783 * 87.17233 * 89.07943 * 4 2 1 16 16 C 1.53786 * 87.07831 * 25.47202 * 15 4 2 17 17 H 1.08997 * 113.61433 * 219.93036 * 16 15 4 18 18 O 1.42904 * 113.61269 * 89.11873 * 16 15 4 19 19 C 1.42897 * 114.00049 * 109.50416 * 18 16 15 20 20 C 1.50706 * 109.47203 * 179.97438 * 19 18 16 21 21 C 1.38228 * 119.99960 * 269.72490 * 20 19 18 22 22 C 1.38243 * 120.00020 * 179.76267 * 21 20 19 23 23 C 1.38239 * 119.99478 * 0.51308 * 22 21 20 24 24 C 1.38236 * 119.99913 * 359.74244 * 23 22 21 25 25 C 1.38228 * 120.00483 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47604 * 288.75293 * 1 2 3 27 27 H 1.09005 * 109.47244 * 48.75460 * 1 2 3 28 28 H 1.08999 * 109.47128 * 168.75038 * 1 2 3 29 29 H 1.09001 * 109.47099 * 191.25089 * 3 2 1 30 30 H 1.08999 * 109.46746 * 311.24349 * 3 2 1 31 31 H 1.09000 * 109.47310 * 71.24710 * 3 2 1 32 32 H 0.97000 * 120.00415 * 336.53054 * 6 4 2 33 33 H 0.97001 * 119.99542 * 359.97438 * 10 9 7 34 34 H 1.08995 * 113.61830 * 140.01677 * 15 4 2 35 35 H 1.08994 * 113.61539 * 270.84255 * 15 4 2 36 36 H 1.08998 * 109.47378 * 300.00055 * 19 18 16 37 37 H 1.08999 * 109.47221 * 59.99623 * 19 18 16 38 38 H 1.08004 * 120.00254 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.99984 * 180.23212 * 22 21 20 40 40 H 1.07998 * 119.99357 * 179.71988 * 23 22 21 41 41 H 1.08003 * 119.99363 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00083 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1459 -0.9289 1.0595 5 1 1.4950 -1.1073 1.9153 6 7 3.5075 -0.5536 1.4488 7 6 4.0036 -0.9420 2.6646 8 1 3.3913 -1.5254 3.3363 9 6 5.2939 -0.5869 3.0332 10 7 6.0403 0.1236 2.2144 11 14 5.9710 -1.1173 4.6914 12 1 5.9691 -2.6000 4.7756 13 1 5.1220 -0.5590 5.7744 14 1 7.3599 -0.6142 4.8429 15 6 2.0929 -2.0444 0.0022 16 6 2.1471 -0.9329 -1.0592 17 1 1.4971 -1.1144 -1.9151 18 8 3.4756 -0.5682 -1.4388 19 6 3.8343 -0.9738 -2.7612 20 6 5.2473 -0.5394 -3.0541 21 6 5.4862 0.6974 -3.6235 22 6 6.7827 1.0979 -3.8876 23 6 7.8395 0.2572 -3.5921 24 6 7.6002 -0.9818 -3.0276 25 6 6.3041 -1.3803 -2.7591 26 1 -0.3634 0.3304 0.9731 27 1 -0.3634 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1953 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7727 31 1 1.9626 1.8727 0.9731 32 1 4.0576 -0.0300 0.8453 33 1 5.6888 0.3987 1.3532 34 1 2.9713 -2.6897 0.0038 35 1 1.1572 -2.6033 0.0037 36 1 3.7635 -2.0586 -2.8403 37 1 3.1564 -0.5123 -3.4793 38 1 4.6602 1.3525 -3.8581 39 1 6.9696 2.0657 -4.3290 40 1 8.8521 0.5683 -3.8027 41 1 8.4259 -1.6387 -2.7971 42 1 6.1172 -2.3484 -2.3184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272436134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 13.058275 kcal Electronic energy + Delta-G solvation = -21887.084767 eV Core-core repulsion = 18833.177248 eV Total energy + Delta-G solvation = -3053.907519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80171 -38.93694 -36.06284 -33.62790 -31.57886 -30.71280 -30.35706 -29.14148 -26.91612 -25.73762 -23.97548 -22.56055 -22.39968 -21.63813 -21.10143 -17.90918 -17.30549 -16.74067 -16.02643 -15.42850 -15.18449 -14.89206 -14.34505 -14.18924 -13.68546 -13.50551 -13.23408 -13.06121 -12.83163 -12.66785 -12.49344 -12.04441 -11.87816 -11.75868 -11.27093 -11.13670 -10.91164 -10.84330 -10.65623 -10.62682 -10.13294 -10.00550 -9.86233 -9.46639 -9.01498 -8.84840 -8.73014 -8.71178 -8.61533 -6.85525 -5.96343 -2.94069 1.46077 1.60703 3.56937 3.61048 3.72794 3.78571 4.28546 4.74923 4.90553 4.95838 5.09344 5.15274 5.17537 5.27270 5.39717 5.43969 5.52313 5.54487 5.65928 5.67872 5.72634 5.82888 5.92343 5.97904 6.05547 6.12947 6.14989 6.22004 6.25583 6.32964 6.40812 6.54997 6.61461 6.68120 6.69687 6.79586 6.87914 7.04436 7.08743 7.17133 7.72097 7.95121 8.91962 9.41792 10.28334 10.45863 11.52180 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.007215 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.664147 B = 3879.810239 C = 5591.697427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.120 4.120 4 C 0.190 3.810 5 H 0.058 0.942 6 N -0.708 5.708 7 C -0.332 4.332 8 H 0.061 0.939 9 C -0.044 4.044 10 N -0.942 5.942 11 Si 1.078 2.922 12 H -0.297 1.297 13 H -0.296 1.296 14 H -0.286 1.286 15 C -0.199 4.199 16 C 0.078 3.922 17 H 0.057 0.943 18 O -0.341 6.341 19 C 0.104 3.896 20 C -0.084 4.084 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.091 4.091 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.378 0.622 33 H 0.258 0.742 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -0.902 -13.328 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.110 4.110 3 C -0.177 4.177 4 C 0.077 3.923 5 H 0.076 0.924 6 N -0.348 5.348 7 C -0.463 4.463 8 H 0.079 0.921 9 C -0.242 4.242 10 N -0.587 5.587 11 Si 0.909 3.091 12 H -0.225 1.225 13 H -0.224 1.224 14 H -0.212 1.212 15 C -0.241 4.241 16 C 0.019 3.981 17 H 0.075 0.925 18 O -0.260 6.260 19 C 0.028 3.972 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.109 4.109 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.844 -0.842 -12.009 12.637 hybrid contribution -1.371 -0.201 -1.334 1.924 sum -5.216 -1.044 -13.343 14.364 Atomic orbital electron populations 1.21483 0.93288 1.01183 1.01695 1.22711 0.94642 0.96088 0.97594 1.21390 1.01787 0.94240 1.00304 1.20972 0.88003 0.90957 0.92402 0.92437 1.42188 1.10282 1.63724 1.18651 1.20061 0.99820 1.31915 0.94491 0.92061 1.25685 0.93167 0.99809 1.05589 1.70818 1.38509 1.39090 1.10260 0.83276 0.76111 0.75243 0.74423 1.22466 1.22405 1.21153 1.24342 1.00994 0.98568 1.00174 1.23093 0.83482 0.96700 0.94776 0.92526 1.88059 1.29817 1.78707 1.29416 1.21275 0.92142 0.98303 0.85493 1.19585 0.94381 0.95048 0.99443 1.20996 0.96958 0.95203 0.98662 1.21074 0.92725 0.99509 1.01109 1.21138 0.98864 0.94376 0.99074 1.21125 0.96738 0.96774 0.99181 1.21071 0.92346 0.99936 0.97523 0.92075 0.92994 0.92740 0.91273 0.94393 0.92883 0.78557 0.93026 0.91046 0.90886 0.93000 0.93161 0.86274 0.86230 0.86274 0.86061 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.08 37.16 0.34 -1.30 16 2 C -0.11 -1.90 1.34 -153.56 -0.21 -2.10 16 3 C -0.12 -2.22 8.44 37.16 0.31 -1.91 16 4 C 0.19 4.04 4.00 -67.12 -0.27 3.77 16 5 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 6 N -0.71 -18.60 4.71 -52.64 -0.25 -18.85 16 7 C -0.33 -9.68 9.97 -15.06 -0.15 -9.83 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.04 -1.34 5.50 -17.43 -0.10 -1.43 16 10 N -0.94 -30.20 13.70 55.49 0.76 -29.44 16 11 Si 1.08 26.82 29.92 -169.99 -5.09 21.74 16 12 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C -0.20 -3.70 7.36 -25.91 -0.19 -3.89 16 16 C 0.08 1.33 3.78 -25.78 -0.10 1.23 16 17 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 18 O -0.34 -6.46 7.60 -35.23 -0.27 -6.73 16 19 C 0.10 1.60 5.91 36.01 0.21 1.81 16 20 C -0.08 -1.34 5.51 -104.62 -0.58 -1.92 16 21 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 22 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 25 C -0.09 -1.46 9.70 -39.58 -0.38 -1.84 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.68 7.34 -51.93 -0.38 0.30 16 29 H 0.07 1.47 5.67 -51.93 -0.29 1.18 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.38 10.44 4.11 -40.82 -0.17 10.28 16 33 H 0.26 8.35 6.77 -40.82 -0.28 8.07 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.15 7.66 -51.93 -0.40 0.75 16 36 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -33.10 340.16 -9.02 -42.12 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.62 Total: 11.51 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.68 Total: -25.49 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.51 Total: -48.28 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.27 Total: -6.73 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -5.09 Total: 21.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.10 -9.02 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.177 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds