Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 112.90595 * 2 1 4 4 C 1.53782 * 113.61127 * 131.24291 * 2 1 3 5 5 H 1.08992 * 113.61781 * 334.49100 * 4 2 1 6 6 N 1.46500 * 113.61350 * 203.66622 * 4 2 1 7 7 C 1.36943 * 119.99878 * 156.53106 * 6 4 2 8 8 H 1.07996 * 119.99698 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99902 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00319 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 59.99967 * 11 9 7 13 13 H 1.48503 * 109.47261 * 300.00148 * 11 9 7 14 14 H 1.48500 * 109.47454 * 180.02562 * 11 9 7 15 15 C 1.53783 * 87.17233 * 89.07943 * 4 2 1 16 16 C 1.53786 * 87.07831 * 25.47202 * 15 4 2 17 17 H 1.08997 * 113.61433 * 219.93036 * 16 15 4 18 18 O 1.42904 * 113.61269 * 89.11873 * 16 15 4 19 19 C 1.42897 * 114.00049 * 109.50416 * 18 16 15 20 20 C 1.50706 * 109.47203 * 179.97438 * 19 18 16 21 21 C 1.38228 * 119.99960 * 269.72490 * 20 19 18 22 22 C 1.38243 * 120.00020 * 179.76267 * 21 20 19 23 23 C 1.38239 * 119.99478 * 0.51308 * 22 21 20 24 24 C 1.38236 * 119.99913 * 359.74244 * 23 22 21 25 25 C 1.38228 * 120.00483 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47604 * 288.75293 * 1 2 3 27 27 H 1.09005 * 109.47244 * 48.75460 * 1 2 3 28 28 H 1.08999 * 109.47128 * 168.75038 * 1 2 3 29 29 H 1.09001 * 109.47099 * 191.25089 * 3 2 1 30 30 H 1.08999 * 109.46746 * 311.24349 * 3 2 1 31 31 H 1.09000 * 109.47310 * 71.24710 * 3 2 1 32 32 H 0.97000 * 120.00415 * 336.53054 * 6 4 2 33 33 H 0.97001 * 119.99542 * 359.97438 * 10 9 7 34 34 H 1.08995 * 113.61830 * 140.01677 * 15 4 2 35 35 H 1.08994 * 113.61539 * 270.84255 * 15 4 2 36 36 H 1.08998 * 109.47378 * 300.00055 * 19 18 16 37 37 H 1.08999 * 109.47221 * 59.99623 * 19 18 16 38 38 H 1.08004 * 120.00254 * 0.02562 * 21 20 19 39 39 H 1.07997 * 119.99984 * 180.23212 * 22 21 20 40 40 H 1.07998 * 119.99357 * 179.71988 * 23 22 21 41 41 H 1.08003 * 119.99363 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00083 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1459 -0.9289 1.0595 5 1 1.4950 -1.1073 1.9153 6 7 3.5075 -0.5536 1.4488 7 6 4.0036 -0.9420 2.6646 8 1 3.3913 -1.5254 3.3363 9 6 5.2939 -0.5869 3.0332 10 7 6.0403 0.1236 2.2144 11 14 5.9710 -1.1173 4.6914 12 1 5.9691 -2.6000 4.7756 13 1 5.1220 -0.5590 5.7744 14 1 7.3599 -0.6142 4.8429 15 6 2.0929 -2.0444 0.0022 16 6 2.1471 -0.9329 -1.0592 17 1 1.4971 -1.1144 -1.9151 18 8 3.4756 -0.5682 -1.4388 19 6 3.8343 -0.9738 -2.7612 20 6 5.2473 -0.5394 -3.0541 21 6 5.4862 0.6974 -3.6235 22 6 6.7827 1.0979 -3.8876 23 6 7.8395 0.2572 -3.5921 24 6 7.6002 -0.9818 -3.0276 25 6 6.3041 -1.3803 -2.7591 26 1 -0.3634 0.3304 0.9731 27 1 -0.3634 0.6775 -0.7727 28 1 -0.3633 -1.0079 -0.2005 29 1 3.1953 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7727 31 1 1.9626 1.8727 0.9731 32 1 4.0576 -0.0300 0.8453 33 1 5.6888 0.3987 1.3532 34 1 2.9713 -2.6897 0.0038 35 1 1.1572 -2.6033 0.0037 36 1 3.7635 -2.0586 -2.8403 37 1 3.1564 -0.5123 -3.4793 38 1 4.6602 1.3525 -3.8581 39 1 6.9696 2.0657 -4.3290 40 1 8.8521 0.5683 -3.8027 41 1 8.4259 -1.6387 -2.7971 42 1 6.1172 -2.3484 -2.3184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272436134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -5.801571 kcal Electronic energy + Delta-G solvation = -21887.902591 eV Core-core repulsion = 18833.177248 eV Total energy + Delta-G solvation = -3054.725344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23304 -40.08751 -37.45077 -35.68766 -32.73601 -32.13491 -31.81945 -30.87597 -28.19762 -26.98063 -25.92497 -24.29688 -23.52149 -23.15756 -22.24342 -19.43789 -19.36738 -17.96111 -17.39551 -16.63608 -16.60261 -16.39105 -15.87359 -15.57919 -15.46434 -15.21209 -14.49509 -14.35423 -14.22953 -13.99519 -13.75231 -13.38434 -13.08965 -13.03521 -12.78739 -12.72904 -12.58673 -12.41081 -11.99614 -11.96315 -11.89740 -11.60119 -11.51832 -11.35905 -10.79069 -10.68922 -10.24315 -9.84288 -9.76050 -8.98906 -8.34133 -5.24285 0.32833 0.47610 1.54785 1.66014 1.82173 2.53972 2.72608 3.08839 3.42300 3.53599 3.72201 3.80029 3.90523 4.09147 4.13411 4.16773 4.18542 4.25427 4.33022 4.34978 4.40014 4.52656 4.63332 4.73867 4.76293 4.81107 4.84687 4.95141 5.05424 5.07535 5.10638 5.11588 5.22031 5.30055 5.50888 5.54075 5.57005 5.60011 5.65055 5.66021 6.08028 6.44996 6.55279 7.19645 8.14438 8.26093 9.17087 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.007215 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.664147 B = 3879.810239 C = 5591.697427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.114 4.114 4 C 0.160 3.840 5 H 0.049 0.951 6 N -0.723 5.723 7 C -0.330 4.330 8 H 0.062 0.938 9 C -0.107 4.107 10 N -0.972 5.972 11 Si 1.127 2.873 12 H -0.280 1.280 13 H -0.277 1.277 14 H -0.293 1.293 15 C -0.188 4.188 16 C 0.083 3.917 17 H 0.096 0.904 18 O -0.375 6.375 19 C 0.103 3.897 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.119 4.119 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.369 0.631 33 H 0.241 0.759 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -0.733 -14.374 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.172 4.172 4 C 0.049 3.951 5 H 0.067 0.933 6 N -0.364 5.364 7 C -0.462 4.462 8 H 0.080 0.920 9 C -0.298 4.298 10 N -0.620 5.620 11 Si 0.952 3.048 12 H -0.206 1.206 13 H -0.203 1.203 14 H -0.219 1.219 15 C -0.229 4.229 16 C 0.025 3.975 17 H 0.113 0.887 18 O -0.294 6.294 19 C 0.027 3.973 20 C -0.105 4.105 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.203 0.797 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.594 -0.699 -13.079 14.242 hybrid contribution -0.898 -0.262 -1.042 1.400 sum -6.492 -0.960 -14.121 15.572 Atomic orbital electron populations 1.21491 0.89731 1.03170 1.02688 1.22685 0.97060 0.94461 0.95530 1.21304 1.00014 0.95606 1.00236 1.21391 0.85855 0.94145 0.93713 0.93275 1.42312 1.12230 1.64094 1.17765 1.20427 0.99843 1.30487 0.95454 0.92015 1.27158 0.94077 1.00077 1.08531 1.70946 1.39163 1.41637 1.10278 0.82643 0.75236 0.75831 0.71067 1.20642 1.20320 1.21942 1.24230 1.01265 0.97848 0.99573 1.23130 0.83553 0.95151 0.95660 0.88666 1.88048 1.30946 1.79019 1.31388 1.21437 0.92485 0.98780 0.84632 1.19814 0.94699 0.95829 1.00144 1.21298 0.98206 0.94908 0.98419 1.21496 0.92268 1.00605 1.00303 1.21526 1.00457 0.93770 0.98195 1.21407 0.96620 0.97848 0.99416 1.21219 0.93530 1.00140 0.98851 0.92150 0.90482 0.90794 0.94763 0.91268 0.94696 0.79655 0.94844 0.94392 0.87304 0.92671 0.90385 0.84546 0.83305 0.83542 0.84816 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 9.08 71.98 0.65 -2.04 16 2 C -0.10 -3.18 1.34 -51.57 -0.07 -3.25 16 3 C -0.11 -4.17 8.44 71.98 0.61 -3.57 16 4 C 0.16 6.79 4.00 45.52 0.18 6.97 16 5 H 0.05 2.12 8.07 -2.39 -0.02 2.10 16 6 N -0.72 -39.24 4.71 -320.45 -1.51 -40.75 16 7 C -0.33 -19.78 9.97 84.03 0.84 -18.94 16 8 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 9 C -0.11 -6.59 5.50 84.86 0.47 -6.12 16 10 N -0.97 -64.61 13.70 21.65 0.30 -64.32 16 11 Si 1.13 54.83 29.92 68.60 2.05 56.88 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 15 C -0.19 -6.78 7.36 31.12 0.23 -6.55 16 16 C 0.08 2.67 3.78 31.21 0.12 2.79 16 17 H 0.10 2.36 7.86 -2.39 -0.02 2.35 16 18 O -0.37 -14.16 7.60 -148.98 -1.13 -15.29 16 19 C 0.10 3.08 5.91 71.24 0.42 3.51 16 20 C -0.10 -3.37 5.51 -19.86 -0.11 -3.48 16 21 C -0.11 -3.12 9.70 22.27 0.22 -2.91 16 22 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 23 C -0.12 -3.20 10.05 22.27 0.22 -2.97 16 24 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 25 C -0.12 -4.00 9.70 22.27 0.22 -3.79 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 1.49 7.34 -2.39 -0.02 1.47 16 29 H 0.03 1.48 5.67 -2.39 -0.01 1.47 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.37 21.36 4.11 -92.71 -0.38 20.98 16 33 H 0.24 16.41 6.77 -92.71 -0.63 15.78 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 3.09 7.66 -2.39 -0.02 3.08 16 36 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 39 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.98 340.16 4.90 -70.08 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.75 Total: 40.64 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 4.44 Total: -47.25 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -1.21 Total: -105.07 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.13 Total: -15.29 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 2.05 Total: 56.88 kcal Total: -74.98 4.90 -70.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.281 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds