Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.90722 * 2 1 4 4 C 1.53783 * 113.61763 * 228.75005 * 2 1 3 5 5 H 1.08999 * 113.69108 * 156.32664 * 4 2 1 6 6 O 1.42899 * 113.61070 * 25.43050 * 4 2 1 7 7 C 1.42908 * 113.99627 * 153.00134 * 6 4 2 8 8 C 1.50705 * 109.46785 * 179.97438 * 7 6 4 9 9 C 1.38236 * 119.99830 * 269.72234 * 8 7 6 10 10 C 1.38234 * 119.99500 * 179.78672 * 9 8 7 11 11 C 1.38234 * 120.00503 * 0.46910 * 10 9 8 12 12 C 1.38239 * 119.99645 * 359.76366 * 11 10 9 13 13 C 1.38233 * 119.99594 * 90.00068 * 8 7 6 14 14 C 1.53783 * 87.07957 * 270.88066 * 4 2 1 15 15 C 1.53779 * 87.08406 * 334.56741 * 14 4 2 16 16 H 1.09003 * 113.61143 * 270.80174 * 15 14 4 17 17 N 1.46493 * 113.61783 * 139.97739 * 15 14 4 18 18 C 1.36945 * 119.99892 * 104.50248 * 17 15 14 19 19 H 1.08000 * 119.99422 * 359.72792 * 18 17 15 20 20 C 1.38811 * 120.00031 * 179.72716 * 18 17 15 21 21 N 1.31616 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47389 * 59.99917 * 22 20 18 24 24 H 1.48501 * 109.47057 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47102 * 299.99569 * 22 20 18 26 26 H 1.08999 * 109.47223 * 288.74825 * 1 2 3 27 27 H 1.08994 * 109.47121 * 48.74814 * 1 2 3 28 28 H 1.08997 * 109.46631 * 168.74582 * 1 2 3 29 29 H 1.09000 * 109.47495 * 191.24835 * 3 2 1 30 30 H 1.08998 * 109.47246 * 311.24840 * 3 2 1 31 31 H 1.09001 * 109.47422 * 71.25258 * 3 2 1 32 32 H 1.09005 * 109.46927 * 299.99515 * 7 6 4 33 33 H 1.09001 * 109.47237 * 59.99859 * 7 6 4 34 34 H 1.07997 * 120.00071 * 0.02562 * 9 8 7 35 35 H 1.08008 * 119.99582 * 180.25383 * 10 9 8 36 36 H 1.07992 * 120.00291 * 179.78335 * 11 10 9 37 37 H 1.07997 * 120.00146 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.00539 * 359.97438 * 13 8 7 39 39 H 1.08998 * 113.61594 * 220.01091 * 14 4 2 40 40 H 1.09002 * 113.68830 * 89.12667 * 14 4 2 41 41 H 0.97000 * 120.00738 * 284.23713 * 17 15 14 42 42 H 0.97004 * 119.99151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9290 -1.0594 5 1 3.1591 -0.6508 -1.3500 6 8 1.2919 -1.1644 -2.1805 7 6 1.9903 -1.4737 -3.3884 8 6 0.9970 -1.7023 -4.4984 9 6 0.5062 -2.9726 -4.7359 10 6 -0.4083 -3.1815 -5.7513 11 6 -0.8246 -2.1219 -6.5354 12 6 -0.3302 -0.8525 -6.3010 13 6 0.5811 -0.6427 -5.2827 14 6 2.0931 -2.0425 0.0000 15 6 2.1461 -0.9291 1.0594 16 1 3.1591 -0.6508 1.3500 17 7 1.2704 -1.1704 2.2088 18 6 1.8040 -1.5770 3.4026 19 1 2.8699 -1.7239 3.4955 20 6 0.9749 -1.8001 4.4933 21 7 -0.3241 -1.6215 4.3799 22 14 1.7029 -2.3541 6.1220 23 1 2.6661 -1.3329 6.6066 24 1 0.6151 -2.5217 7.1190 25 1 2.4061 -3.6486 5.9351 26 1 -0.3633 0.3303 0.9731 27 1 -0.3633 0.6776 -0.7726 28 1 -0.3632 -1.0079 -0.2006 29 1 3.1954 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7726 31 1 1.9627 1.8726 0.9731 32 1 2.6456 -0.6434 -3.6520 33 1 2.5861 -2.3748 -3.2431 34 1 0.8343 -3.8011 -4.1258 35 1 -0.7949 -4.1733 -5.9342 36 1 -1.5364 -2.2858 -7.3309 37 1 -0.6551 -0.0247 -6.9138 38 1 0.9676 0.3490 -5.0998 39 1 2.9718 -2.6874 0.0000 40 1 1.1575 -2.6019 0.0010 41 1 0.3130 -1.0385 2.1254 42 1 -0.9035 -1.7778 5.1420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272436138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = 6.974856 kcal Electronic energy + Delta-G solvation = -21029.885090 eV Core-core repulsion = 17975.713774 eV Total energy + Delta-G solvation = -3054.171316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77089 -39.15967 -36.32611 -33.40340 -31.80799 -31.00672 -30.42021 -29.44392 -26.96558 -26.09109 -24.30278 -22.68663 -22.12389 -21.61460 -21.38129 -18.01798 -17.12667 -16.91538 -16.38898 -15.63285 -15.43122 -14.66718 -14.40590 -14.39411 -13.83117 -13.61757 -13.47368 -13.15391 -12.81747 -12.67756 -12.55566 -11.95670 -11.59334 -11.51544 -11.50563 -11.21013 -11.12760 -10.94954 -10.90742 -10.80533 -10.27790 -10.23693 -10.13953 -9.79637 -9.41321 -9.02832 -8.92677 -8.88734 -8.80596 -6.90834 -5.74875 -3.03025 1.17650 1.29864 3.45160 3.49357 3.50547 3.54203 4.17833 4.62133 4.71536 4.78455 4.89539 4.98978 5.06966 5.13435 5.24860 5.26985 5.34063 5.47836 5.50815 5.56666 5.69338 5.78342 5.86430 5.91587 5.93635 6.11168 6.12778 6.19820 6.33345 6.35745 6.38039 6.42837 6.49699 6.52355 6.60212 6.69070 6.84526 6.87487 7.06149 7.12331 7.60475 7.71804 8.44293 9.55389 10.14480 10.49588 11.47614 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.003498 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.921734 B = 8003.089042 C = 8298.946412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.131 4.131 4 C 0.066 3.934 5 H 0.078 0.922 6 O -0.361 6.361 7 C 0.100 3.900 8 C -0.083 4.083 9 C -0.099 4.099 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.125 4.125 13 C -0.100 4.100 14 C -0.182 4.182 15 C 0.174 3.826 16 H 0.075 0.925 17 N -0.709 5.709 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.389 0.611 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 1.658 -21.058 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.189 4.189 4 C 0.008 3.992 5 H 0.095 0.905 6 O -0.280 6.280 7 C 0.023 3.977 8 C -0.083 4.083 9 C -0.117 4.117 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.143 4.143 13 C -0.118 4.118 14 C -0.223 4.223 15 C 0.062 3.938 16 H 0.093 0.907 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.944 1.620 -20.840 21.109 hybrid contribution 0.320 -0.385 0.812 0.954 sum 3.264 1.235 -20.029 20.330 Atomic orbital electron populations 1.21244 0.92733 1.01901 1.01074 1.22617 0.97113 0.94237 0.95384 1.21699 0.99434 0.96027 1.01718 1.23833 0.92930 0.98118 0.84308 0.90451 1.88053 1.33081 1.90214 1.16649 1.21292 0.92526 0.99554 0.84302 1.19705 0.98808 0.93656 0.96178 1.21114 0.96595 0.96789 0.97183 1.21150 0.97909 0.99122 0.96059 1.21165 0.99860 0.93083 0.99646 1.21132 0.97790 0.97150 0.98276 1.21076 0.97135 0.98486 0.95117 1.24340 1.01884 0.98421 0.97660 1.21365 0.94468 0.91963 0.86043 0.90747 1.42402 1.06208 1.79338 1.06850 1.19261 0.92426 1.37569 0.88189 0.91223 1.24746 0.95432 1.02493 0.98182 1.69655 1.02261 1.55425 1.30687 0.86272 0.77677 0.78510 0.83740 1.21288 1.21712 1.21291 0.91869 0.93539 0.92243 0.93298 0.93373 0.92033 0.92927 0.92786 0.85871 0.86023 0.86209 0.86088 0.86009 0.92762 0.89615 0.77521 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 7.47 37.16 0.28 -1.79 16 2 C -0.09 -1.59 1.35 -153.69 -0.21 -1.80 16 3 C -0.13 -2.00 9.20 37.16 0.34 -1.66 16 4 C 0.07 1.04 3.70 -25.92 -0.10 0.94 16 5 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 6 O -0.36 -5.67 9.43 -35.23 -0.33 -6.00 16 7 C 0.10 1.24 5.92 36.01 0.21 1.46 16 8 C -0.08 -1.02 5.51 -104.62 -0.58 -1.60 16 9 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 10 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 11 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 12 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 13 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 14 C -0.18 -3.34 7.36 -25.92 -0.19 -3.53 16 15 C 0.17 3.54 3.92 -67.12 -0.26 3.27 16 16 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 17 N -0.71 -17.98 5.31 -52.64 -0.28 -18.26 16 18 C -0.24 -6.80 9.98 -15.06 -0.15 -6.95 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.06 1.27 7.04 -51.93 -0.37 0.90 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.16 7.18 -51.93 -0.37 0.79 16 29 H 0.05 0.66 7.95 -51.93 -0.41 0.24 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.75 7.66 -51.93 -0.40 1.35 16 41 H 0.39 10.44 5.77 -40.82 -0.24 10.20 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -30.90 344.65 -9.22 -40.13 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.80 Total: 9.06 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.71 Total: -19.97 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.45 Total: -45.86 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.33 Total: -6.00 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.90 -9.22 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.100 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds