Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.90722 * 2 1 4 4 C 1.53783 * 113.61763 * 228.75005 * 2 1 3 5 5 H 1.08999 * 113.69108 * 156.32664 * 4 2 1 6 6 O 1.42899 * 113.61070 * 25.43050 * 4 2 1 7 7 C 1.42908 * 113.99627 * 153.00134 * 6 4 2 8 8 C 1.50705 * 109.46785 * 179.97438 * 7 6 4 9 9 C 1.38236 * 119.99830 * 269.72234 * 8 7 6 10 10 C 1.38234 * 119.99500 * 179.78672 * 9 8 7 11 11 C 1.38234 * 120.00503 * 0.46910 * 10 9 8 12 12 C 1.38239 * 119.99645 * 359.76366 * 11 10 9 13 13 C 1.38233 * 119.99594 * 90.00068 * 8 7 6 14 14 C 1.53783 * 87.07957 * 270.88066 * 4 2 1 15 15 C 1.53779 * 87.08406 * 334.56741 * 14 4 2 16 16 H 1.09003 * 113.61143 * 270.80174 * 15 14 4 17 17 N 1.46493 * 113.61783 * 139.97739 * 15 14 4 18 18 C 1.36945 * 119.99892 * 104.50248 * 17 15 14 19 19 H 1.08000 * 119.99422 * 359.72792 * 18 17 15 20 20 C 1.38811 * 120.00031 * 179.72716 * 18 17 15 21 21 N 1.31616 * 119.99707 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47389 * 59.99917 * 22 20 18 24 24 H 1.48501 * 109.47057 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47102 * 299.99569 * 22 20 18 26 26 H 1.08999 * 109.47223 * 288.74825 * 1 2 3 27 27 H 1.08994 * 109.47121 * 48.74814 * 1 2 3 28 28 H 1.08997 * 109.46631 * 168.74582 * 1 2 3 29 29 H 1.09000 * 109.47495 * 191.24835 * 3 2 1 30 30 H 1.08998 * 109.47246 * 311.24840 * 3 2 1 31 31 H 1.09001 * 109.47422 * 71.25258 * 3 2 1 32 32 H 1.09005 * 109.46927 * 299.99515 * 7 6 4 33 33 H 1.09001 * 109.47237 * 59.99859 * 7 6 4 34 34 H 1.07997 * 120.00071 * 0.02562 * 9 8 7 35 35 H 1.08008 * 119.99582 * 180.25383 * 10 9 8 36 36 H 1.07992 * 120.00291 * 179.78335 * 11 10 9 37 37 H 1.07997 * 120.00146 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.00539 * 359.97438 * 13 8 7 39 39 H 1.08998 * 113.61594 * 220.01091 * 14 4 2 40 40 H 1.09002 * 113.68830 * 89.12667 * 14 4 2 41 41 H 0.97000 * 120.00738 * 284.23713 * 17 15 14 42 42 H 0.97004 * 119.99151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9290 -1.0594 5 1 3.1591 -0.6508 -1.3500 6 8 1.2919 -1.1644 -2.1805 7 6 1.9903 -1.4737 -3.3884 8 6 0.9970 -1.7023 -4.4984 9 6 0.5062 -2.9726 -4.7359 10 6 -0.4083 -3.1815 -5.7513 11 6 -0.8246 -2.1219 -6.5354 12 6 -0.3302 -0.8525 -6.3010 13 6 0.5811 -0.6427 -5.2827 14 6 2.0931 -2.0425 0.0000 15 6 2.1461 -0.9291 1.0594 16 1 3.1591 -0.6508 1.3500 17 7 1.2704 -1.1704 2.2088 18 6 1.8040 -1.5770 3.4026 19 1 2.8699 -1.7239 3.4955 20 6 0.9749 -1.8001 4.4933 21 7 -0.3241 -1.6215 4.3799 22 14 1.7029 -2.3541 6.1220 23 1 2.6661 -1.3329 6.6066 24 1 0.6151 -2.5217 7.1190 25 1 2.4061 -3.6486 5.9351 26 1 -0.3633 0.3303 0.9731 27 1 -0.3633 0.6776 -0.7726 28 1 -0.3632 -1.0079 -0.2006 29 1 3.1954 1.3518 -0.2005 30 1 1.6428 2.0077 -0.7726 31 1 1.9627 1.8726 0.9731 32 1 2.6456 -0.6434 -3.6520 33 1 2.5861 -2.3748 -3.2431 34 1 0.8343 -3.8011 -4.1258 35 1 -0.7949 -4.1733 -5.9342 36 1 -1.5364 -2.2858 -7.3309 37 1 -0.6551 -0.0247 -6.9138 38 1 0.9676 0.3490 -5.0998 39 1 2.9718 -2.6874 0.0000 40 1 1.1575 -2.6019 0.0010 41 1 0.3130 -1.0385 2.1254 42 1 -0.9035 -1.7778 5.1420 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272436138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -9.915299 kcal Electronic energy + Delta-G solvation = -21030.617502 eV Core-core repulsion = 17975.713774 eV Total energy + Delta-G solvation = -3054.903728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08848 -40.06011 -37.55519 -35.35587 -32.75297 -32.21099 -31.77502 -31.03137 -28.35306 -27.13231 -26.16531 -23.62519 -23.46074 -23.16878 -22.20948 -19.68291 -18.89596 -17.96036 -17.51770 -16.60529 -16.49022 -16.30123 -15.92388 -15.57428 -15.29668 -15.04932 -14.44208 -14.25858 -14.10571 -13.98415 -13.62186 -13.28431 -13.08635 -12.98776 -12.94166 -12.82824 -12.61609 -12.39887 -12.15620 -11.99824 -11.96167 -11.86518 -11.64052 -11.39048 -11.04155 -10.77413 -10.17588 -9.80870 -9.73015 -8.94697 -7.92917 -5.20926 0.36640 0.51251 1.47161 1.50460 1.56460 2.55325 2.66398 3.18191 3.37679 3.62874 3.75421 3.84371 3.95730 4.06787 4.16388 4.20762 4.26466 4.30440 4.40103 4.42586 4.47218 4.56343 4.67602 4.72741 4.78751 4.83688 4.88594 5.03993 5.09643 5.10158 5.17065 5.17441 5.24220 5.33902 5.49491 5.56147 5.60687 5.61766 5.64196 5.70265 6.11566 6.29021 6.43921 7.35291 8.13746 8.37040 9.30635 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.003498 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.921734 B = 8003.089042 C = 8298.946412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.089 3.911 5 H 0.110 0.890 6 O -0.379 6.379 7 C 0.097 3.903 8 C -0.105 4.105 9 C -0.118 4.118 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.180 4.180 15 C 0.155 3.845 16 H 0.081 0.919 17 N -0.724 5.724 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.279 1.279 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.377 0.623 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 2.240 -22.944 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.031 3.969 5 H 0.128 0.872 6 O -0.299 6.299 7 C 0.021 3.979 8 C -0.105 4.105 9 C -0.137 4.137 10 C -0.151 4.151 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.130 4.130 14 C -0.221 4.221 15 C 0.045 3.955 16 H 0.099 0.901 17 N -0.363 5.363 18 C -0.376 4.376 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.205 1.205 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.210 0.790 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.386 2.204 -22.775 23.298 hybrid contribution -0.128 -0.583 1.252 1.387 sum 4.258 1.621 -21.523 22.000 Atomic orbital electron populations 1.21127 0.93966 1.00922 1.00081 1.22526 0.96145 0.95655 0.94813 1.21663 1.00947 0.94279 1.01468 1.23607 0.94142 0.95290 0.83871 0.87200 1.88032 1.34034 1.90221 1.17565 1.21480 0.92809 1.00594 0.83048 1.19829 0.99686 0.94289 0.96725 1.21293 0.97466 0.96871 0.98028 1.21446 0.97522 1.00417 0.95713 1.21538 0.99818 0.92785 0.99871 1.21483 0.97156 0.98123 0.98053 1.21311 0.97537 0.98724 0.95410 1.24164 1.00941 0.98600 0.98368 1.21726 0.94244 0.94099 0.85401 0.90070 1.42587 1.06266 1.79718 1.07757 1.19700 0.92832 1.35929 0.89135 0.90423 1.25576 0.95839 1.03760 1.01758 1.69828 1.03600 1.57520 1.31281 0.85205 0.76766 0.78357 0.79389 1.20226 1.22362 1.20484 0.94428 0.91712 0.94254 0.90957 0.91614 0.93671 0.90898 0.92232 0.85992 0.84276 0.83694 0.83750 0.84940 0.91597 0.92457 0.78952 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.86 7.47 71.98 0.54 -3.32 16 2 C -0.09 -3.03 1.35 -51.65 -0.07 -3.10 16 3 C -0.13 -3.55 9.20 71.98 0.66 -2.89 16 4 C 0.09 2.62 3.70 31.12 0.12 2.73 16 5 H 0.11 2.57 7.72 -2.39 -0.02 2.55 16 6 O -0.38 -11.33 9.43 -148.98 -1.40 -12.73 16 7 C 0.10 2.22 5.92 71.24 0.42 2.64 16 8 C -0.11 -2.44 5.51 -19.86 -0.11 -2.55 16 9 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 10 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 11 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 12 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 13 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 14 C -0.18 -6.53 7.36 31.12 0.23 -6.30 16 15 C 0.16 6.27 3.92 45.52 0.18 6.44 16 16 H 0.08 3.14 8.08 -2.39 -0.02 3.12 16 17 N -0.72 -37.62 5.31 -320.44 -1.70 -39.32 16 18 C -0.24 -13.79 9.98 84.03 0.84 -12.95 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 22 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H 0.04 1.57 7.04 -2.39 -0.02 1.55 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.58 7.18 -2.39 -0.02 1.57 16 29 H 0.07 1.69 7.95 -2.39 -0.02 1.67 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 33 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 41 H 0.38 21.11 5.77 -92.71 -0.53 20.57 16 42 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -67.68 344.65 4.03 -63.65 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.45 Total: 34.21 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.37 Total: -34.04 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -1.42 Total: -99.89 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.40 Total: -12.73 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -67.68 4.03 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.737 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds