Wall clock time and date at job start Mon Mar 30 2020 01:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 112.90770 * 2 1 4 4 C 1.53780 * 113.61824 * 131.25385 * 2 1 3 5 5 H 1.09004 * 113.69025 * 334.55793 * 4 2 1 6 6 N 1.46496 * 113.61795 * 203.66153 * 4 2 1 7 7 C 1.36939 * 120.00077 * 157.99611 * 6 4 2 8 8 H 1.07997 * 119.99728 * 359.72656 * 7 6 4 9 9 C 1.38815 * 119.99845 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99884 * 359.72042 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 179.72678 * 9 7 6 12 12 H 1.48493 * 109.47326 * 89.99909 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99659 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99370 * 11 9 7 15 15 C 1.53780 * 87.08217 * 89.11103 * 4 2 1 16 16 C 1.53782 * 113.61359 * 228.75275 * 2 1 3 17 17 H 1.09000 * 113.69323 * 156.32455 * 16 2 1 18 18 O 1.42904 * 113.61568 * 25.42915 * 16 2 1 19 19 C 1.42897 * 114.00027 * 152.99985 * 18 16 2 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 16 21 21 C 1.38235 * 120.00211 * 269.72410 * 20 19 18 22 22 C 1.38234 * 119.99977 * 179.78422 * 21 20 19 23 23 C 1.38234 * 119.99956 * 0.47461 * 22 21 20 24 24 C 1.38237 * 120.00003 * 359.75695 * 23 22 21 25 25 C 1.38232 * 119.99887 * 90.00262 * 20 19 18 26 26 H 1.08999 * 109.46948 * 288.74639 * 1 2 3 27 27 H 1.09001 * 109.47269 * 48.74503 * 1 2 3 28 28 H 1.09001 * 109.47486 * 168.74744 * 1 2 3 29 29 H 1.09002 * 109.47153 * 191.25701 * 3 2 1 30 30 H 1.08998 * 109.47161 * 311.25117 * 3 2 1 31 31 H 1.08993 * 109.47312 * 71.25560 * 3 2 1 32 32 H 0.97004 * 120.00009 * 338.00228 * 6 4 2 33 33 H 0.97000 * 119.99517 * 180.02562 * 10 9 7 34 34 H 1.09002 * 113.61402 * 139.97839 * 15 4 2 35 35 H 1.08993 * 113.61950 * 270.88471 * 15 4 2 36 36 H 1.08997 * 109.47301 * 300.00432 * 19 18 16 37 37 H 1.09000 * 109.47325 * 59.99985 * 19 18 16 38 38 H 1.08002 * 119.99811 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.99913 * 180.24771 * 22 21 20 40 40 H 1.07997 * 120.00039 * 179.78235 * 23 22 21 41 41 H 1.08001 * 120.00184 * 179.97438 * 24 23 22 42 42 H 1.08009 * 120.00130 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 1.0593 5 1 1.4956 -1.1094 1.9152 6 7 3.5076 -0.5539 1.4485 7 6 4.0146 -0.9679 2.6513 8 1 3.4090 -1.5672 3.3150 9 6 5.3046 -0.6119 3.0203 10 7 6.0423 0.1189 2.2116 11 14 5.9933 -1.1702 4.6645 12 1 6.6691 -2.4819 4.4984 13 1 6.9722 -0.1679 5.1570 14 1 4.8862 -1.3042 5.6451 15 6 2.0929 -2.0426 -0.0001 16 6 2.1459 -0.9290 -1.0594 17 1 3.1590 -0.6508 -1.3501 18 8 1.2918 -1.1644 -2.1806 19 6 1.9900 -1.4736 -3.3885 20 6 0.9966 -1.7022 -4.4984 21 6 0.5058 -2.9725 -4.7360 22 6 -0.4088 -3.1814 -5.7513 23 6 -0.8251 -2.1217 -6.5353 24 6 -0.3306 -0.8523 -6.3009 25 6 0.5807 -0.6427 -5.2827 26 1 -0.3633 0.3303 0.9731 27 1 -0.3634 0.6777 -0.7726 28 1 -0.3634 -1.0079 -0.2005 29 1 3.1953 1.3517 -0.2006 30 1 1.6428 2.0078 -0.7726 31 1 1.9628 1.8726 0.9731 32 1 4.0501 -0.0122 0.8541 33 1 6.9439 0.3673 2.4693 34 1 2.9716 -2.6875 -0.0002 35 1 1.1568 -2.6010 0.0000 36 1 2.6453 -0.6435 -3.6520 37 1 2.5858 -2.3748 -3.2432 38 1 0.8339 -3.8010 -4.1258 39 1 -0.7953 -4.1731 -5.9343 40 1 -1.5369 -2.2855 -7.3308 41 1 -0.6555 -0.0245 -6.9137 42 1 0.9673 0.3491 -5.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272436141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:08 Heat of formation + Delta-G solvation = 6.923838 kcal Electronic energy + Delta-G solvation = -21085.163538 eV Core-core repulsion = 18030.990010 eV Total energy + Delta-G solvation = -3054.173528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77583 -39.16909 -36.29150 -33.41506 -31.78768 -31.00219 -30.50794 -29.28312 -26.87849 -26.09862 -24.19250 -22.68099 -22.55057 -21.55579 -21.34184 -17.88656 -17.26854 -16.86867 -16.21608 -15.59092 -15.42924 -14.75341 -14.48217 -14.29316 -13.79644 -13.53896 -13.46515 -13.13582 -12.83647 -12.59908 -12.40926 -12.21855 -11.73320 -11.59678 -11.53718 -11.24496 -11.03064 -10.94557 -10.89636 -10.80805 -10.44464 -10.16506 -10.09409 -9.61395 -9.44526 -9.02538 -8.90848 -8.86771 -8.82620 -6.98462 -5.80380 -3.08937 1.18701 1.30119 3.42218 3.47680 3.49168 3.56090 4.22041 4.55975 4.73752 4.80628 4.90451 5.00313 5.11747 5.15214 5.28635 5.36695 5.39170 5.46639 5.53339 5.58971 5.72540 5.87157 5.88129 5.92587 5.94787 6.00699 6.18848 6.25323 6.33754 6.37159 6.37915 6.42873 6.52239 6.52882 6.54880 6.69407 6.87897 6.88155 7.02934 7.06648 7.62682 7.70873 8.39069 9.49776 10.06931 10.41525 11.42217 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003480 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.864972 B = 8044.102943 C = 8233.086988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 C -0.126 4.126 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.705 5.705 7 C -0.240 4.240 8 H 0.072 0.928 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.188 4.188 16 C 0.074 3.926 17 H 0.083 0.917 18 O -0.368 6.368 19 C 0.099 3.901 20 C -0.081 4.081 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -2.614 -15.641 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.183 4.183 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.344 5.344 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.209 4.209 10 N -0.581 5.581 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.230 4.230 16 C 0.017 3.983 17 H 0.101 0.899 18 O -0.287 6.287 19 C 0.023 3.977 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.221 0.779 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.536 -2.646 -15.420 20.048 hybrid contribution 0.978 -0.196 0.559 1.144 sum -11.558 -2.843 -14.861 19.040 Atomic orbital electron populations 1.21317 0.93162 1.01745 1.00578 1.22660 0.95938 0.95174 0.96046 1.21568 1.00639 0.95008 1.01135 1.21030 0.88081 0.91653 0.92865 0.91524 1.42225 1.09955 1.61674 1.20580 1.19286 0.96661 1.26580 0.94607 0.91000 1.24748 0.96948 1.00549 0.98608 1.69658 1.09918 1.41798 1.36755 0.86171 0.78675 0.77730 0.83506 1.21722 1.21785 1.20704 1.24302 1.01301 0.98554 0.98812 1.23919 0.93263 0.97331 0.83787 0.89936 1.87978 1.33559 1.90276 1.16879 1.21293 0.92449 0.99858 0.84149 1.19735 0.98561 0.93610 0.96195 1.21110 0.96623 0.96772 0.97293 1.21135 0.98023 0.99044 0.96114 1.21154 0.99980 0.93094 0.99645 1.21134 0.97806 0.97151 0.98236 1.21103 0.97029 0.98614 0.95071 0.93064 0.93017 0.92438 0.92213 0.93938 0.92233 0.77927 0.93460 0.91444 0.90702 0.92744 0.92694 0.85913 0.86089 0.86253 0.86095 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.46 37.15 0.31 -1.38 16 2 C -0.10 -1.68 1.34 -153.70 -0.21 -1.88 16 3 C -0.13 -2.21 8.58 37.16 0.32 -1.89 16 4 C 0.18 3.58 4.00 -67.12 -0.27 3.31 16 5 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 6 N -0.71 -17.45 4.87 -52.64 -0.26 -17.70 16 7 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 10 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 11 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C -0.19 -3.46 7.36 -25.92 -0.19 -3.65 16 16 C 0.07 1.28 3.60 -25.91 -0.09 1.18 16 17 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 18 O -0.37 -5.87 9.43 -35.23 -0.33 -6.21 16 19 C 0.10 1.35 5.91 36.01 0.21 1.56 16 20 C -0.08 -1.02 5.51 -104.62 -0.58 -1.59 16 21 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 22 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.88 7.18 -51.93 -0.37 0.50 16 29 H 0.06 1.14 6.59 -51.93 -0.34 0.79 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.39 10.01 6.27 -40.82 -0.26 9.76 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.27 7.65 -51.93 -0.40 0.88 16 36 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -29.89 344.79 -9.19 -39.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.80 Total: 8.92 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.70 Total: -19.45 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.47 Total: -44.75 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.33 Total: -6.21 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.89 -9.19 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.999 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds