Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 112.90770 * 2 1 4 4 C 1.53780 * 113.61824 * 131.25385 * 2 1 3 5 5 H 1.09004 * 113.69025 * 334.55793 * 4 2 1 6 6 N 1.46496 * 113.61795 * 203.66153 * 4 2 1 7 7 C 1.36939 * 120.00077 * 157.99611 * 6 4 2 8 8 H 1.07997 * 119.99728 * 359.72656 * 7 6 4 9 9 C 1.38815 * 119.99845 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99884 * 359.72042 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 179.72678 * 9 7 6 12 12 H 1.48493 * 109.47326 * 89.99909 * 11 9 7 13 13 H 1.48506 * 109.46545 * 209.99659 * 11 9 7 14 14 H 1.48498 * 109.47210 * 329.99370 * 11 9 7 15 15 C 1.53780 * 87.08217 * 89.11103 * 4 2 1 16 16 C 1.53782 * 113.61359 * 228.75275 * 2 1 3 17 17 H 1.09000 * 113.69323 * 156.32455 * 16 2 1 18 18 O 1.42904 * 113.61568 * 25.42915 * 16 2 1 19 19 C 1.42897 * 114.00027 * 152.99985 * 18 16 2 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 16 21 21 C 1.38235 * 120.00211 * 269.72410 * 20 19 18 22 22 C 1.38234 * 119.99977 * 179.78422 * 21 20 19 23 23 C 1.38234 * 119.99956 * 0.47461 * 22 21 20 24 24 C 1.38237 * 120.00003 * 359.75695 * 23 22 21 25 25 C 1.38232 * 119.99887 * 90.00262 * 20 19 18 26 26 H 1.08999 * 109.46948 * 288.74639 * 1 2 3 27 27 H 1.09001 * 109.47269 * 48.74503 * 1 2 3 28 28 H 1.09001 * 109.47486 * 168.74744 * 1 2 3 29 29 H 1.09002 * 109.47153 * 191.25701 * 3 2 1 30 30 H 1.08998 * 109.47161 * 311.25117 * 3 2 1 31 31 H 1.08993 * 109.47312 * 71.25560 * 3 2 1 32 32 H 0.97004 * 120.00009 * 338.00228 * 6 4 2 33 33 H 0.97000 * 119.99517 * 180.02562 * 10 9 7 34 34 H 1.09002 * 113.61402 * 139.97839 * 15 4 2 35 35 H 1.08993 * 113.61950 * 270.88471 * 15 4 2 36 36 H 1.08997 * 109.47301 * 300.00432 * 19 18 16 37 37 H 1.09000 * 109.47325 * 59.99985 * 19 18 16 38 38 H 1.08002 * 119.99811 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.99913 * 180.24771 * 22 21 20 40 40 H 1.07997 * 120.00039 * 179.78235 * 23 22 21 41 41 H 1.08001 * 120.00184 * 179.97438 * 24 23 22 42 42 H 1.08009 * 120.00130 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 1.0593 5 1 1.4956 -1.1094 1.9152 6 7 3.5076 -0.5539 1.4485 7 6 4.0146 -0.9679 2.6513 8 1 3.4090 -1.5672 3.3150 9 6 5.3046 -0.6119 3.0203 10 7 6.0423 0.1189 2.2116 11 14 5.9933 -1.1702 4.6645 12 1 6.6691 -2.4819 4.4984 13 1 6.9722 -0.1679 5.1570 14 1 4.8862 -1.3042 5.6451 15 6 2.0929 -2.0426 -0.0001 16 6 2.1459 -0.9290 -1.0594 17 1 3.1590 -0.6508 -1.3501 18 8 1.2918 -1.1644 -2.1806 19 6 1.9900 -1.4736 -3.3885 20 6 0.9966 -1.7022 -4.4984 21 6 0.5058 -2.9725 -4.7360 22 6 -0.4088 -3.1814 -5.7513 23 6 -0.8251 -2.1217 -6.5353 24 6 -0.3306 -0.8523 -6.3009 25 6 0.5807 -0.6427 -5.2827 26 1 -0.3633 0.3303 0.9731 27 1 -0.3634 0.6777 -0.7726 28 1 -0.3634 -1.0079 -0.2005 29 1 3.1953 1.3517 -0.2006 30 1 1.6428 2.0078 -0.7726 31 1 1.9628 1.8726 0.9731 32 1 4.0501 -0.0122 0.8541 33 1 6.9439 0.3673 2.4693 34 1 2.9716 -2.6875 -0.0002 35 1 1.1568 -2.6010 0.0000 36 1 2.6453 -0.6435 -3.6520 37 1 2.5858 -2.3748 -3.2432 38 1 0.8339 -3.8010 -4.1258 39 1 -0.7953 -4.1731 -5.9343 40 1 -1.5369 -2.2855 -7.3308 41 1 -0.6555 -0.0245 -6.9137 42 1 0.9673 0.3491 -5.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272436141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -8.575233 kcal Electronic energy + Delta-G solvation = -21085.835628 eV Core-core repulsion = 18030.990010 eV Total energy + Delta-G solvation = -3054.845619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16492 -40.08196 -37.57603 -35.35010 -32.76609 -32.28045 -31.77998 -30.91005 -28.24985 -27.17132 -26.05819 -24.16308 -23.46288 -23.09101 -22.21825 -19.57754 -18.98921 -17.88986 -17.49541 -16.62215 -16.58344 -16.36858 -15.88198 -15.54265 -15.31774 -15.12117 -14.32567 -14.24424 -14.05860 -13.92178 -13.91331 -13.43767 -13.08857 -12.99608 -12.90398 -12.83647 -12.63138 -12.42246 -12.19492 -12.10475 -11.93295 -11.85504 -11.60534 -11.41923 -10.93849 -10.82699 -10.20592 -9.81189 -9.73684 -9.00363 -7.95511 -5.23803 0.35961 0.51042 1.47668 1.48788 1.57364 2.55095 2.62578 3.14389 3.36533 3.56909 3.70605 3.82261 3.92526 3.99170 4.16295 4.18226 4.19435 4.31340 4.35709 4.39756 4.47973 4.56040 4.67572 4.77363 4.79869 4.89065 4.90508 5.01774 5.08255 5.10615 5.13787 5.16949 5.24479 5.31901 5.49684 5.55862 5.58159 5.61538 5.63202 5.70119 6.11013 6.26248 6.35185 7.33295 8.08339 8.32542 9.27827 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033094 B = 0.003480 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.864972 B = 8044.102943 C = 8233.086988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.086 4.086 3 C -0.121 4.121 4 C 0.159 3.841 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.242 4.242 8 H 0.076 0.924 9 C -0.073 4.073 10 N -0.969 5.969 11 Si 0.973 3.027 12 H -0.288 1.288 13 H -0.296 1.296 14 H -0.269 1.269 15 C -0.178 4.178 16 C 0.085 3.915 17 H 0.069 0.931 18 O -0.370 6.370 19 C 0.097 3.903 20 C -0.103 4.103 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.114 4.114 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -3.077 -16.677 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 C -0.178 4.178 4 C 0.049 3.951 5 H 0.083 0.917 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.094 0.906 9 C -0.265 4.265 10 N -0.619 5.619 11 Si 0.802 3.198 12 H -0.216 1.216 13 H -0.223 1.223 14 H -0.194 1.194 15 C -0.219 4.219 16 C 0.028 3.972 17 H 0.086 0.914 18 O -0.289 6.289 19 C 0.020 3.980 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.210 0.790 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.645 -3.132 -16.467 22.258 hybrid contribution 1.521 -0.089 0.771 1.708 sum -13.124 -3.222 -15.696 20.711 Atomic orbital electron populations 1.21284 0.90984 1.02296 1.01560 1.22580 0.97382 0.94455 0.94368 1.21499 0.99498 0.95473 1.01342 1.21260 0.86247 0.93745 0.93852 0.91711 1.42325 1.11572 1.61767 1.19832 1.19656 0.96771 1.25559 0.95374 0.90593 1.25529 0.97522 1.01448 1.02038 1.69811 1.09986 1.43570 1.38536 0.85151 0.77948 0.76898 0.79829 1.21555 1.22256 1.19420 1.24163 1.01287 0.98063 0.98348 1.23615 0.92822 0.96468 0.84328 0.91352 1.87955 1.33497 1.90253 1.17218 1.21406 0.93008 0.99907 0.83648 1.19731 0.99428 0.94623 0.96493 1.21273 0.97370 0.96502 0.98213 1.21454 0.97311 1.00483 0.95425 1.21554 0.99784 0.92607 0.99814 1.21461 0.97026 0.98333 0.97801 1.21276 0.97713 0.98569 0.95671 0.92182 0.91809 0.92203 0.94415 0.91512 0.93226 0.79004 0.94005 0.93387 0.88899 0.92441 0.92800 0.85769 0.83849 0.83427 0.83762 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.96 8.46 71.98 0.61 -2.35 16 2 C -0.09 -2.94 1.34 -51.66 -0.07 -3.01 16 3 C -0.12 -4.20 8.58 71.98 0.62 -3.58 16 4 C 0.16 6.48 4.00 45.52 0.18 6.66 16 5 H 0.06 2.63 8.08 -2.39 -0.02 2.62 16 6 N -0.72 -36.16 4.87 -320.45 -1.56 -37.71 16 7 C -0.24 -13.44 9.98 84.03 0.84 -12.60 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 11 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 13 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C -0.18 -6.49 7.36 31.12 0.23 -6.26 16 16 C 0.09 2.92 3.60 31.12 0.11 3.04 16 17 H 0.07 2.54 7.72 -2.39 -0.02 2.52 16 18 O -0.37 -11.51 9.43 -148.98 -1.40 -12.92 16 19 C 0.10 2.60 5.91 71.24 0.42 3.03 16 20 C -0.10 -2.50 5.51 -19.87 -0.11 -2.61 16 21 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.11 -2.46 9.70 22.27 0.22 -2.25 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.68 7.18 -2.39 -0.02 1.67 16 29 H 0.04 1.46 6.59 -2.39 -0.02 1.45 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.38 20.22 6.27 -92.71 -0.58 19.64 16 33 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 3.05 7.65 -2.39 -0.02 3.03 16 36 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.05 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -63.88 344.79 4.15 -59.73 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.40 Total: 33.13 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.40 Total: -31.71 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -1.28 Total: -96.44 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.40 Total: -12.92 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -63.88 4.15 -59.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272436141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.155 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds