Wall clock time and date at job start Mon Mar 30 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.50696 * 109.47344 * 60.00169 * 4 2 1 6 6 O 1.21282 * 119.99533 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00322 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00206 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99788 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00469 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00130 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46774 * 90.00580 * 14 12 10 16 16 H 1.48501 * 109.47300 * 210.00118 * 14 12 10 17 17 H 1.48492 * 109.47594 * 330.00349 * 14 12 10 18 18 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 19 19 C 1.38237 * 119.99761 * 300.00365 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 119.97467 * 18 2 1 24 24 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 25 25 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 26 26 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 29 29 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 30 30 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 32 32 H 0.97000 * 120.00457 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.46608 * 300.00114 * 8 7 5 34 34 H 1.08999 * 109.47069 * 60.00007 * 8 7 5 35 35 H 1.09006 * 109.46836 * 299.99867 * 9 8 7 36 36 H 1.08999 * 109.47432 * 59.99810 * 9 8 7 37 37 H 0.96998 * 120.00093 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 2 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8401 0.9750 -2.3683 7 7 1.8628 -0.4715 -3.7037 8 6 1.3740 0.2188 -4.8999 9 6 1.8831 -0.5031 -6.1492 10 6 1.3808 0.2073 -7.3796 11 1 0.7602 1.0857 -7.2805 12 6 1.7135 -0.2639 -8.6319 13 7 2.4697 -1.3332 -8.7526 14 14 1.0903 0.6163 -10.1571 15 1 2.0685 1.6579 -10.5618 16 1 0.9250 -0.3630 -11.2611 17 1 -0.2176 1.2539 -9.8610 18 6 2.0324 -0.7104 1.2305 19 6 1.6984 -0.2382 2.4860 20 6 2.1588 -0.8902 3.6147 21 6 2.9523 -2.0150 3.4878 22 6 3.2903 -2.4844 2.2323 23 6 2.8267 -1.8346 1.1036 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 2.4198 -1.2606 -3.7928 33 1 0.2840 0.2187 -4.8995 34 1 1.7374 1.2464 -4.9003 35 1 2.9731 -0.5035 -6.1498 36 1 1.5194 -1.5307 -6.1486 37 1 2.7034 -1.6650 -9.6336 38 1 1.0778 0.6402 2.5851 39 1 1.8982 -0.5210 4.5956 40 1 3.3117 -2.5245 4.3697 41 1 3.9138 -3.3606 2.1332 42 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273071796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:19 Heat of formation + Delta-G solvation = -34.347178 kcal Electronic energy + Delta-G solvation = -20671.707428 eV Core-core repulsion = 17615.744254 eV Total energy + Delta-G solvation = -3055.963174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41401 -38.98679 -36.04443 -34.66658 -32.87130 -31.27273 -30.22804 -29.74919 -27.85952 -27.12257 -24.66871 -23.16758 -22.47029 -21.06276 -20.27300 -19.10786 -17.45777 -16.49431 -16.12563 -15.38079 -15.32299 -15.07270 -14.69457 -14.50936 -14.14831 -14.04798 -13.57961 -13.41413 -13.35643 -12.60456 -12.56917 -12.31835 -11.99153 -11.77330 -11.50901 -11.40716 -11.21305 -10.99415 -10.94077 -10.78950 -10.66064 -10.56987 -10.28998 -9.70434 -9.39830 -9.05495 -9.04182 -8.80108 -8.52727 -8.33954 -6.10607 -4.13477 1.24106 1.26304 3.00796 3.28533 3.34698 3.38579 3.65914 3.68289 4.40451 4.52046 4.65772 4.84758 4.93145 4.97591 4.98577 5.15890 5.26497 5.35425 5.36420 5.46462 5.55794 5.66017 5.82100 5.84636 5.87022 6.00594 6.10418 6.10796 6.30026 6.33312 6.34216 6.37629 6.51289 6.51928 6.57988 6.74263 6.87061 6.99119 7.50731 7.60556 7.87694 8.02813 8.26905 8.68477 8.92699 9.51489 11.01015 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041953 B = 0.002904 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.245589 B = 9638.486547 C =10104.062710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.137 4.137 5 C 0.507 3.493 6 O -0.543 6.543 7 N -0.723 5.723 8 C 0.122 3.878 9 C 0.012 3.988 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.063 4.063 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.126 4.126 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -1.876 22.956 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.005 4.005 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.293 3.707 6 O -0.422 6.422 7 N -0.373 5.373 8 C -0.001 4.001 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.063 4.063 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.136 4.136 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.905 -1.279 22.870 22.923 hybrid contribution 0.129 -0.165 -0.872 0.897 sum 1.034 -1.445 21.997 22.069 Atomic orbital electron populations 1.22126 0.93042 1.01671 1.03802 1.19189 0.96454 0.95192 0.89673 1.22126 1.00175 0.94534 1.03802 1.21877 1.02355 1.00576 0.92915 1.20487 0.80632 0.84827 0.84759 1.90536 1.38469 1.26750 1.86448 1.46382 1.52772 1.31749 1.06365 1.21702 0.98467 0.96242 0.83649 1.19320 0.96916 0.96026 0.90256 1.21055 1.31968 1.12529 0.90475 0.92273 1.24999 0.95020 0.95011 0.99276 1.69954 1.36710 1.22909 1.23760 0.86515 0.79364 0.79356 0.82345 1.20548 1.21156 1.19728 1.19966 0.96602 0.95144 0.94598 1.20989 1.00258 1.00094 0.91897 1.21119 0.98253 0.96029 0.98384 1.21112 0.99272 0.97147 0.97390 1.21152 0.99932 0.99881 0.92640 1.21242 0.98296 0.95778 0.99029 0.93073 0.88977 0.93445 0.93444 0.88974 0.93080 0.88913 0.88914 0.76974 0.92621 0.92616 0.95997 0.95986 0.92838 0.86143 0.86340 0.86448 0.86216 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.99 37.16 0.30 -1.55 16 2 C 0.00 -0.05 0.60 -155.66 -0.09 -0.15 16 3 C -0.15 -1.85 7.99 37.16 0.30 -1.55 16 4 C -0.14 -1.61 3.43 -27.89 -0.10 -1.70 16 5 C 0.51 7.97 7.24 -10.99 -0.08 7.89 16 6 O -0.54 -10.03 11.35 5.56 0.06 -9.97 16 7 N -0.72 -12.11 5.56 -60.29 -0.33 -12.45 16 8 C 0.12 2.54 5.61 -4.04 -0.02 2.51 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 11 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 14 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.06 -0.68 4.76 -104.62 -0.50 -1.18 16 19 C -0.11 -1.16 8.71 -39.58 -0.34 -1.50 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 21 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.13 -1.26 8.98 -39.58 -0.36 -1.61 16 24 H 0.05 0.57 7.39 -51.92 -0.38 0.18 16 25 H 0.09 1.37 5.51 -51.93 -0.29 1.08 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.37 5.51 -51.93 -0.29 1.08 16 29 H 0.05 0.57 7.39 -51.93 -0.38 0.18 16 30 H 0.09 0.95 7.51 -51.93 -0.39 0.56 16 31 H 0.09 0.95 7.51 -51.93 -0.39 0.56 16 32 H 0.40 5.76 8.47 -40.82 -0.35 5.41 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.12 1.11 7.10 -52.48 -0.37 0.74 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.13 1.10 5.90 -52.49 -0.31 0.79 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -30.60 337.52 -8.61 -39.20 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.49 Total: 3.53 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.64 Total: -16.37 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.40 Total: -37.78 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.06 Total: -9.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.60 -8.61 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273071796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.857 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds