Wall clock time and date at job start Mon Mar 30 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.50696 * 109.47344 * 60.00169 * 4 2 1 6 6 O 1.21282 * 119.99533 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00322 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00206 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99788 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00469 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00130 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46774 * 90.00580 * 14 12 10 16 16 H 1.48501 * 109.47300 * 210.00118 * 14 12 10 17 17 H 1.48492 * 109.47594 * 330.00349 * 14 12 10 18 18 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 19 19 C 1.38237 * 119.99761 * 300.00365 * 18 2 1 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 119.97467 * 18 2 1 24 24 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 25 25 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 26 26 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 29 29 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 30 30 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 32 32 H 0.97000 * 120.00457 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.46608 * 300.00114 * 8 7 5 34 34 H 1.08999 * 109.47069 * 60.00007 * 8 7 5 35 35 H 1.09006 * 109.46836 * 299.99867 * 9 8 7 36 36 H 1.08999 * 109.47432 * 59.99810 * 9 8 7 37 37 H 0.96998 * 120.00093 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00088 * 359.96779 * 19 18 2 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07999 * 119.99990 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 8 0.8401 0.9750 -2.3683 7 7 1.8628 -0.4715 -3.7037 8 6 1.3740 0.2188 -4.8999 9 6 1.8831 -0.5031 -6.1492 10 6 1.3808 0.2073 -7.3796 11 1 0.7602 1.0857 -7.2805 12 6 1.7135 -0.2639 -8.6319 13 7 2.4697 -1.3332 -8.7526 14 14 1.0903 0.6163 -10.1571 15 1 2.0685 1.6579 -10.5618 16 1 0.9250 -0.3630 -11.2611 17 1 -0.2176 1.2539 -9.8610 18 6 2.0324 -0.7104 1.2305 19 6 1.6984 -0.2382 2.4860 20 6 2.1588 -0.8902 3.6147 21 6 2.9523 -2.0150 3.4878 22 6 3.2903 -2.4844 2.2323 23 6 2.8267 -1.8346 1.1036 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 2.4198 -1.2606 -3.7928 33 1 0.2840 0.2187 -4.8995 34 1 1.7374 1.2464 -4.9003 35 1 2.9731 -0.5035 -6.1498 36 1 1.5194 -1.5307 -6.1486 37 1 2.7034 -1.6650 -9.6336 38 1 1.0778 0.6402 2.5851 39 1 1.8982 -0.5210 4.5956 40 1 3.3117 -2.5245 4.3697 41 1 3.9138 -3.3606 2.1332 42 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273071796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:19 Heat of formation + Delta-G solvation = -51.288361 kcal Electronic energy + Delta-G solvation = -20672.442053 eV Core-core repulsion = 17615.744254 eV Total energy + Delta-G solvation = -3056.697799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44021 -40.00373 -37.17146 -36.15206 -34.79781 -32.13483 -31.65398 -30.68790 -29.08893 -28.11526 -26.51107 -24.07029 -23.26624 -22.79353 -21.51908 -20.08642 -18.64969 -18.22519 -17.25186 -16.65183 -16.64010 -16.41459 -15.82311 -15.69450 -15.35411 -15.11422 -14.80499 -14.52842 -14.27500 -14.18944 -13.64044 -13.44102 -13.21237 -13.00598 -12.88651 -12.73340 -12.52464 -12.49404 -12.26916 -12.05297 -11.87606 -11.67704 -11.60357 -11.44430 -11.38248 -10.60375 -10.42417 -9.90642 -9.74122 -9.52267 -8.24577 -6.34937 0.53161 0.57586 1.41366 1.41645 1.53152 1.74225 2.30152 2.47859 2.95628 3.10174 3.60261 3.75413 4.05478 4.08562 4.22528 4.23285 4.36174 4.36797 4.51277 4.56315 4.61568 4.70456 4.73171 4.75791 4.85610 4.87606 5.04382 5.09742 5.10122 5.22663 5.24304 5.28860 5.44986 5.48071 5.59444 5.59767 5.70338 5.71661 5.79341 5.82108 6.16915 6.19795 6.71209 6.78837 7.34497 7.39468 8.87259 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041953 B = 0.002904 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.245589 B = 9638.486547 C =10104.062710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.000 4.000 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.505 3.495 6 O -0.570 6.570 7 N -0.722 5.722 8 C 0.142 3.858 9 C 0.023 3.977 10 C -0.547 4.547 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.075 4.075 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.409 0.591 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.266 0.734 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -2.444 24.215 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 C -0.203 4.203 4 C -0.168 4.168 5 C 0.293 3.707 6 O -0.451 6.451 7 N -0.373 5.373 8 C 0.018 3.982 9 C -0.015 4.015 10 C -0.585 4.585 11 H 0.076 0.924 12 C -0.192 4.192 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.075 4.075 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.143 4.143 23 C -0.154 4.154 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.328 -1.857 24.153 24.261 hybrid contribution 0.007 0.002 -1.173 1.173 sum 1.335 -1.855 22.980 23.094 Atomic orbital electron populations 1.22050 0.93833 1.01591 1.02819 1.19103 0.95810 0.94840 0.90327 1.22050 1.00350 0.95070 1.02820 1.21909 1.03519 1.00929 0.90403 1.21213 0.79770 0.84447 0.85235 1.90550 1.39580 1.28115 1.86846 1.46219 1.53267 1.32143 1.05632 1.21157 0.97520 0.95482 0.84008 1.19128 0.95784 0.95313 0.91268 1.21483 1.32202 1.12859 0.91989 0.92400 1.25868 0.95105 0.95727 1.02492 1.70055 1.37674 1.24187 1.24718 0.85461 0.79009 0.78320 0.78369 1.19749 1.20484 1.19099 1.19858 0.97723 0.95835 0.94116 1.21136 1.00660 1.00524 0.92150 1.21398 0.97974 0.96050 0.98941 1.21455 0.98647 0.96943 0.98205 1.21448 0.99903 1.00391 0.92513 1.21437 0.98267 0.95639 1.00048 0.92183 0.91748 0.93015 0.93010 0.91743 0.92190 0.86820 0.86824 0.75533 0.93764 0.93734 0.97409 0.97396 0.92537 0.85877 0.84469 0.84308 0.84318 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 7.99 71.98 0.58 -2.98 16 2 C 0.00 -0.01 0.60 -52.93 -0.03 -0.04 16 3 C -0.15 -3.55 7.99 71.98 0.58 -2.97 16 4 C -0.13 -2.80 3.43 29.85 0.10 -2.70 16 5 C 0.50 15.75 7.24 87.66 0.63 16.38 16 6 O -0.57 -21.48 11.35 -3.04 -0.03 -21.51 16 7 N -0.72 -24.10 5.56 -463.06 -2.57 -26.67 16 8 C 0.14 6.05 5.61 86.38 0.48 6.53 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C -0.55 -30.60 9.11 25.60 0.23 -30.36 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.01 0.38 5.46 84.65 0.46 0.84 16 13 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 14 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.08 -1.49 4.76 -19.86 -0.09 -1.58 16 19 C -0.13 -2.34 8.71 22.27 0.19 -2.15 16 20 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 22 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 23 C -0.14 -2.40 8.98 22.27 0.20 -2.20 16 24 H 0.06 1.31 7.39 -2.38 -0.02 1.29 16 25 H 0.06 1.95 5.51 -2.39 -0.01 1.94 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.95 5.51 -2.39 -0.01 1.94 16 29 H 0.06 1.31 7.39 -2.38 -0.02 1.29 16 30 H 0.11 2.06 7.51 -2.38 -0.02 2.04 16 31 H 0.11 2.06 7.51 -2.39 -0.02 2.04 16 32 H 0.41 11.62 8.47 -92.71 -0.79 10.84 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.12 2.11 7.10 -2.91 -0.02 2.09 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.14 2.00 5.90 -2.91 -0.02 1.98 16 Total: -1.00 -65.78 337.52 4.08 -61.70 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.22 Total: 20.03 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.16 Total: -25.16 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.29 Total: -80.72 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.03 Total: -21.51 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -65.78 4.08 -61.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273071796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.411 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds