Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 C 1.38231 * 119.99890 * 269.72761 * 5 4 2 7 7 C 1.38243 * 119.99932 * 179.76127 * 6 5 4 8 8 C 1.38235 * 119.99614 * 0.51210 * 7 6 5 9 9 C 1.38238 * 120.00119 * 359.74635 * 8 7 6 10 10 C 1.38234 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 12 12 O 1.21279 * 120.00072 * 119.99863 * 11 2 1 13 13 N 1.34777 * 119.99762 * 300.00068 * 11 2 1 14 14 C 1.46496 * 120.00258 * 180.02562 * 13 11 2 15 15 C 1.52993 * 109.47551 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47112 * 90.00199 * 20 18 16 22 22 H 1.48499 * 109.47134 * 210.00310 * 20 18 16 23 23 H 1.48498 * 109.47011 * 329.99931 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 32 32 H 1.08006 * 120.00368 * 0.02562 * 6 5 4 33 33 H 1.07997 * 120.00078 * 180.23244 * 7 6 5 34 34 H 1.08001 * 120.00016 * 179.71719 * 8 7 6 35 35 H 1.08003 * 119.99866 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.99975 * 179.97438 * 10 9 8 37 37 H 0.96999 * 120.00047 * 359.97438 * 13 11 2 38 38 H 1.09004 * 109.46875 * 299.99676 * 14 13 11 39 39 H 1.09000 * 109.47024 * 59.99522 * 14 13 11 40 40 H 1.09004 * 109.46862 * 299.99801 * 15 14 13 41 41 H 1.08992 * 109.47399 * 59.99503 * 15 14 13 42 42 H 0.97005 * 120.00032 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 6 0.3326 -0.3800 -3.0473 7 6 -0.1306 0.2750 -4.1732 8 6 0.6165 1.2920 -4.7375 9 6 1.8242 1.6575 -4.1729 10 6 2.2846 1.0064 -3.0438 11 6 2.0324 -0.7105 1.2305 12 8 2.7296 -1.6966 1.1191 13 7 1.7067 -0.2501 2.4546 14 6 2.1955 -0.9403 3.6507 15 6 1.6859 -0.2189 4.9000 16 6 2.1882 -0.9293 6.1304 17 1 2.8092 -1.8074 6.0313 18 6 1.8559 -0.4578 7.3827 19 7 1.1001 0.6117 7.5034 20 14 2.4791 -1.3380 8.9079 21 1 3.7875 -0.7632 9.3112 22 1 1.5015 -1.1666 10.0125 23 1 2.6435 -2.7840 8.6124 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 -0.2493 -1.1773 -2.6088 33 1 -1.0740 -0.0109 -4.6145 34 1 0.2569 1.8006 -5.6197 35 1 2.4081 2.4518 -4.6141 36 1 3.2283 1.2918 -2.6030 37 1 1.1494 0.5388 2.5436 38 1 1.8325 -1.9682 3.6509 39 1 3.2855 -0.9399 3.6505 40 1 2.0493 0.8088 4.8996 41 1 0.5960 -0.2188 4.9004 42 1 0.8660 0.9433 8.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273074862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -43.145307 kcal Electronic energy + Delta-G solvation = -20771.189671 eV Core-core repulsion = 17714.844981 eV Total energy + Delta-G solvation = -3056.344689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33282 -39.03138 -35.79123 -34.84328 -32.86941 -31.43976 -31.12426 -29.41604 -27.38894 -26.77968 -24.99947 -22.89482 -22.63180 -21.30117 -20.74898 -18.94071 -16.80864 -16.61622 -16.39678 -15.52393 -15.43307 -15.11115 -14.90304 -14.50824 -13.90154 -13.74627 -13.69204 -13.55877 -12.97360 -12.67268 -12.65382 -12.29400 -12.12819 -12.11460 -11.81756 -11.22738 -11.12971 -11.11409 -11.03604 -11.01662 -10.88607 -10.63670 -10.32331 -9.74536 -9.40855 -9.11129 -9.05603 -8.79621 -8.53036 -8.33992 -6.09814 -4.12608 1.19404 1.23650 3.03920 3.29068 3.35130 3.39095 3.55119 3.75902 4.41025 4.66405 4.67816 4.73263 4.83993 4.91047 4.91283 5.04574 5.27247 5.29818 5.32798 5.37768 5.57818 5.65409 5.67340 5.75687 5.80128 5.90819 5.91961 6.05797 6.17085 6.18541 6.31037 6.34669 6.35478 6.37341 6.53862 6.74365 6.84997 6.94867 7.51591 7.61533 7.88496 8.04339 8.27812 8.68016 8.93490 9.52255 11.01794 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047307 B = 0.002923 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.735023 B = 9576.535946 C = 9677.262885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.059 4.059 5 C -0.070 4.070 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.515 3.485 12 O -0.552 6.552 13 N -0.719 5.719 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.397 0.603 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 3.505 -22.879 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.096 4.096 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.300 3.700 12 O -0.430 6.430 13 N -0.369 5.369 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.063 2.898 -22.783 23.059 hybrid contribution -0.012 0.039 0.993 0.993 sum -2.075 2.937 -21.790 22.085 Atomic orbital electron populations 1.21949 0.92631 1.02639 1.02868 1.20702 0.97305 0.96664 0.93186 1.21948 1.01544 0.93732 1.02873 1.20451 1.01468 0.98560 0.89166 1.19905 0.94677 0.96146 0.96313 1.21117 0.95922 1.00182 0.96083 1.21135 0.99812 0.96576 0.96355 1.21115 0.95339 0.98012 1.00188 1.21135 0.96470 0.99966 0.96310 1.21114 1.00016 0.96114 0.96058 1.20404 0.80376 0.84486 0.84716 1.90659 1.38635 1.26744 1.86968 1.46321 1.52648 1.31716 1.06185 1.21714 0.98475 0.96265 0.83652 1.19315 0.96921 0.96012 0.90210 1.21054 1.31926 1.12553 0.90466 0.92275 1.24996 0.95001 0.95036 0.99261 1.69956 1.36668 1.22959 1.23743 0.86514 0.78586 0.80130 0.82343 1.20553 1.21159 1.19733 0.91216 0.91878 0.92114 0.91885 0.92114 0.91202 0.90202 0.90206 0.86036 0.86280 0.86438 0.86280 0.86034 0.76949 0.92630 0.92644 0.95988 0.95974 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.79 37.16 0.29 -1.28 16 2 C -0.08 -0.93 0.64 -155.66 -0.10 -1.04 16 3 C -0.14 -1.57 7.78 37.15 0.29 -1.28 16 4 C -0.06 -0.70 3.75 -27.88 -0.10 -0.81 16 5 C -0.07 -0.72 4.00 -104.62 -0.42 -1.14 16 6 C -0.12 -1.10 7.90 -39.58 -0.31 -1.41 16 7 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 8 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 9 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.12 -1.10 7.88 -39.58 -0.31 -1.41 16 11 C 0.52 8.69 6.48 -10.98 -0.07 8.62 16 12 O -0.55 -11.34 15.98 5.56 0.09 -11.25 16 13 N -0.72 -12.61 5.34 -60.30 -0.32 -12.93 16 14 C 0.12 2.60 5.61 -4.05 -0.02 2.58 16 15 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.07 0.68 6.19 -51.93 -0.32 0.36 16 25 H 0.06 0.68 7.56 -51.93 -0.39 0.28 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.68 6.17 -51.93 -0.32 0.36 16 30 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.12 1.05 8.04 -52.48 -0.42 0.63 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 1.05 8.03 -52.49 -0.42 0.63 16 37 H 0.40 6.13 7.31 -40.82 -0.30 5.83 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -31.40 343.12 -8.61 -40.01 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.75 Total: 2.60 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.51 Total: -14.58 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.41 Total: -38.35 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.40 -8.61 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273074862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds