Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 C 1.52992 * 109.47359 * 239.99719 * 2 1 3 5 5 C 1.53003 * 109.46943 * 119.99403 * 2 1 3 6 6 N 1.46503 * 109.46843 * 63.61118 * 5 2 1 7 7 C 1.46499 * 119.99880 * 273.68530 * 6 5 2 8 8 C 1.50703 * 109.46792 * 264.28305 * 7 6 5 9 9 C 1.38234 * 120.00018 * 84.82951 * 8 7 6 10 10 C 1.38236 * 120.00116 * 179.97438 * 9 8 7 11 11 C 1.38241 * 119.99877 * 359.97158 * 10 9 8 12 12 C 1.38234 * 119.99703 * 0.27951 * 11 10 9 13 13 C 1.38229 * 120.00143 * 264.80007 * 8 7 6 14 14 C 1.34780 * 120.00179 * 93.68820 * 6 5 2 15 15 O 1.21686 * 119.99612 * 180.02562 * 14 6 5 16 16 C 1.46376 * 119.99975 * 359.97438 * 14 6 5 17 17 H 1.08001 * 119.99700 * 357.55658 * 16 14 6 18 18 C 1.40051 * 119.99854 * 177.55864 * 16 14 6 19 19 N 1.30671 * 119.99717 * 6.47058 * 18 16 14 20 20 Si 1.86795 * 119.99901 * 186.47345 * 18 16 14 21 21 H 1.48502 * 109.47468 * 94.97512 * 20 18 16 22 22 H 1.48500 * 109.47214 * 214.97709 * 20 18 16 23 23 H 1.48505 * 109.47079 * 334.97365 * 20 18 16 24 24 H 1.09007 * 109.47215 * 300.00180 * 1 2 3 25 25 H 1.08995 * 109.47188 * 60.00192 * 1 2 3 26 26 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47116 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46902 * 299.99722 * 3 2 1 29 29 H 1.08993 * 109.47152 * 59.99718 * 3 2 1 30 30 H 1.08998 * 109.47200 * 298.96667 * 4 2 1 31 31 H 1.09008 * 109.47002 * 58.96647 * 4 2 1 32 32 H 1.09000 * 109.47432 * 178.96290 * 4 2 1 33 33 H 1.08997 * 109.47685 * 303.60484 * 5 2 1 34 34 H 1.09007 * 109.46975 * 183.60671 * 5 2 1 35 35 H 1.08995 * 109.47306 * 144.28081 * 7 6 5 36 36 H 1.09000 * 109.46876 * 24.27753 * 7 6 5 37 37 H 1.08003 * 120.00495 * 359.96802 * 9 8 7 38 38 H 1.07997 * 120.00490 * 179.97438 * 10 9 8 39 39 H 1.07996 * 119.99863 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.99852 * 179.72511 * 12 11 10 41 41 H 1.08009 * 119.99990 * 0.02562 * 13 8 7 42 42 H 0.96997 * 119.99407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 7 1.6239 -2.1252 1.2067 7 6 0.3095 -2.5157 1.7227 8 6 0.4495 -2.9903 3.1461 9 6 0.4418 -2.0765 4.1833 10 6 0.5696 -2.5118 5.4891 11 6 0.7045 -3.8612 5.7577 12 6 0.7175 -4.7745 4.7201 13 6 0.5849 -4.3394 3.4147 14 6 2.4503 -3.0577 0.6929 15 8 2.1045 -4.2238 0.6571 16 6 3.7634 -2.6675 0.1769 17 1 4.0542 -1.6274 0.1717 18 6 4.6425 -3.6430 -0.3099 19 7 4.2456 -4.8829 -0.4217 20 14 6.3825 -3.1714 -0.7994 21 1 7.3016 -3.4184 0.3405 22 1 6.8077 -3.9886 -1.9641 23 1 6.4214 -1.7323 -1.1639 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6920 -1.7541 -1.2399 31 1 1.6616 -0.2182 -2.1391 32 1 3.1299 -0.7052 -1.2585 33 1 1.6249 -0.2460 2.1381 34 1 3.1281 -0.6655 1.2823 35 1 -0.0971 -3.3200 1.1097 36 1 -0.3629 -1.6584 1.6900 37 1 0.3360 -1.0223 3.9736 38 1 0.5640 -1.7979 6.2994 39 1 0.8040 -4.2013 6.7778 40 1 0.8274 -5.8283 4.9296 41 1 0.5909 -5.0535 2.6043 42 1 4.8546 -5.5585 -0.7585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274721451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -21.367298 kcal Electronic energy + Delta-G solvation = -22325.201139 eV Core-core repulsion = 19269.800814 eV Total energy + Delta-G solvation = -3055.400324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.20280 -38.02292 -35.97677 -33.48182 -32.29011 -30.83267 -30.39459 -27.63167 -26.81691 -26.12342 -25.63271 -24.11181 -22.05006 -21.04334 -19.16905 -18.48087 -16.49150 -16.09858 -15.61775 -15.05420 -14.81008 -14.52643 -14.17732 -14.08643 -13.58862 -13.07806 -12.92718 -12.79356 -12.46715 -12.14662 -12.05935 -11.80282 -11.61585 -11.33283 -11.15913 -11.03618 -10.97374 -10.84944 -10.58435 -10.50470 -10.49978 -10.21927 -10.18608 -10.04221 -9.61399 -8.81094 -8.43513 -8.33739 -7.48897 -7.17698 -6.17072 -4.57196 1.82124 1.90281 3.13730 3.21963 3.23740 4.07757 4.24067 4.58307 4.77902 5.28089 5.30596 5.33615 5.35875 5.43366 5.50383 5.57907 5.78868 5.90195 5.93406 5.96294 6.00309 6.09043 6.15366 6.15914 6.26484 6.36893 6.38726 6.49943 6.54318 6.58016 6.59550 6.67901 6.78784 6.89958 6.95040 7.00810 7.22408 7.29241 7.49373 7.50718 7.68978 8.18357 8.39411 9.06373 9.47490 10.61260 10.80703 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.007814 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.401335 B = 3582.262152 C = 4949.304745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.130 4.130 5 C 0.138 3.862 6 N -0.631 5.631 7 C 0.158 3.842 8 C -0.086 4.086 9 C -0.113 4.113 10 C -0.132 4.132 11 C -0.131 4.131 12 C -0.127 4.127 13 C -0.086 4.086 14 C 0.563 3.437 15 O -0.575 6.575 16 C -0.537 4.537 17 H 0.074 0.926 18 C 0.089 3.911 19 N -0.767 5.767 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.264 1.264 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 8.385 5.439 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.013 3.987 6 N -0.367 5.367 7 C 0.034 3.966 8 C -0.087 4.087 9 C -0.132 4.132 10 C -0.150 4.150 11 C -0.150 4.150 12 C -0.145 4.145 13 C -0.105 4.105 14 C 0.369 3.631 15 O -0.457 6.457 16 C -0.573 4.573 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.396 5.396 20 Si 0.723 3.277 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.189 1.189 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.044 7.532 5.332 11.032 hybrid contribution 1.029 0.330 -0.136 1.089 sum -5.015 7.862 5.196 10.675 Atomic orbital electron populations 1.21968 0.95720 1.01808 1.00205 1.21011 0.95114 0.94712 0.98007 1.21805 1.01039 0.95873 1.00711 1.21879 1.01893 1.00758 0.94171 1.21275 1.00504 0.82506 0.94379 1.48048 1.16143 1.06971 1.65542 1.20128 0.87569 0.99447 0.89429 1.20590 0.97961 0.93495 0.96686 1.20960 1.00898 0.98854 0.92495 1.20981 1.02030 0.95588 0.96414 1.21004 1.01901 0.93550 0.98525 1.21133 1.00991 0.99254 0.93144 1.21290 0.96614 0.96033 0.96538 1.18162 0.84336 0.83663 0.76949 1.90578 1.76072 1.18256 1.60832 1.21017 0.98893 0.94318 1.43111 0.90834 1.25682 0.99171 0.94521 0.93688 1.70015 1.34782 1.01465 1.33293 0.86514 0.83335 0.79399 0.78492 1.19950 1.20571 1.18853 0.93650 0.93673 0.91983 0.92682 0.93251 0.93387 0.91387 0.95154 0.91661 0.93571 0.90021 0.90810 0.91313 0.86905 0.86942 0.86998 0.86738 0.85259 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.30 37.16 0.27 -1.74 16 2 C -0.09 -1.38 0.85 -154.51 -0.13 -1.51 16 3 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 4 C -0.13 -2.40 7.00 37.15 0.26 -2.14 16 5 C 0.14 2.49 4.48 -4.04 -0.02 2.47 16 6 N -0.63 -13.44 1.97 -176.72 -0.35 -13.79 16 7 C 0.16 3.01 4.32 -5.19 -0.02 2.99 16 8 C -0.09 -1.60 5.41 -104.63 -0.57 -2.17 16 9 C -0.11 -1.85 9.72 -39.58 -0.38 -2.23 16 10 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 11 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 12 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 13 C -0.09 -1.68 9.39 -39.59 -0.37 -2.06 16 14 C 0.56 14.99 6.11 -12.99 -0.08 14.91 16 15 O -0.57 -17.45 13.96 5.20 0.07 -17.38 16 16 C -0.54 -14.26 6.98 -35.63 -0.25 -14.51 16 17 H 0.07 1.81 4.70 -52.49 -0.25 1.56 16 18 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 19 N -0.77 -22.36 11.85 55.55 0.66 -21.70 16 20 Si 0.90 19.88 29.56 -169.99 -5.03 14.85 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.98 5.73 -51.93 -0.30 0.68 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.50 6.29 -51.93 -0.33 1.17 16 31 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 1.29 6.40 -51.93 -0.33 0.95 16 33 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.08 1.60 5.92 -51.93 -0.31 1.29 16 35 H 0.07 1.54 7.51 -51.93 -0.39 1.15 16 36 H 0.07 1.11 5.83 -51.93 -0.30 0.80 16 37 H 0.11 1.61 7.96 -52.48 -0.42 1.19 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.13 2.79 7.60 -52.48 -0.40 2.39 16 42 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -31.26 331.57 -8.28 -39.54 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.37 Total: 5.98 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.26 Total: -12.49 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.31 Total: -35.49 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.07 Total: -17.38 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.26 -8.28 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274721451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds